data_1RB2 # _model_server_result.job_id 4HhurJszCxGFcrPZu6xm9A _model_server_result.datetime_utc '2025-01-18 11:52:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":164}' # _entry.id 1RB2 # _exptl.entry_id 1RB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.03 _cell.angle_gamma 90 _cell.entry_id 1RB2 _cell.length_a 41.781 _cell.length_b 75.717 _cell.length_c 59.082 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 290 n n PA O2A NAP sing 291 n n PA O5B NAP sing 292 n n PA O3 NAP sing 293 n n O2A HOA2 NAP sing 294 n n O5B C5B NAP sing 295 n n C5B C4B NAP sing 296 n n C5B H51A NAP sing 297 n n C5B H52A NAP sing 298 n n C4B O4B NAP sing 299 n n C4B C3B NAP sing 300 n n C4B H4B NAP sing 301 n n O4B C1B NAP sing 302 n n C3B O3B NAP sing 303 n n C3B C2B NAP sing 304 n n C3B H3B NAP sing 305 n n O3B HO3A NAP sing 306 n n C2B O2B NAP sing 307 n n C2B C1B NAP sing 308 n n C2B H2B NAP sing 309 n n O2B P2B NAP sing 310 n n C1B N9A NAP sing 311 n n C1B H1B NAP sing 312 n n N9A C8A NAP sing 313 n y N9A C4A NAP sing 314 n y C8A N7A NAP doub 315 n y C8A H8A NAP sing 316 n n N7A C5A NAP sing 317 n y C5A C6A NAP sing 318 n y C5A C4A NAP doub 319 n y C6A N6A NAP sing 320 n n C6A N1A NAP doub 321 n y N6A H61A NAP sing 322 n n N6A H62A NAP sing 323 n n N1A C2A NAP sing 324 n y C2A N3A NAP doub 325 n y C2A H2A NAP sing 326 n n N3A C4A NAP sing 327 n y O3 PN NAP sing 328 n n PN O1N NAP doub 329 n n PN O2N NAP sing 330 n n PN O5D NAP sing 331 n n O5D C5D NAP sing 332 n n C5D C4D NAP sing 333 n n C5D H51N NAP sing 334 n n C5D H52N NAP sing 335 n n C4D O4D NAP sing 336 n n C4D C3D NAP sing 337 n n C4D H4D NAP sing 338 n n O4D C1D NAP sing 339 n n C3D O3D NAP sing 340 n n C3D C2D NAP sing 341 n n C3D H3D NAP sing 342 n n O3D HO3N NAP sing 343 n n C2D O2D NAP sing 344 n n C2D C1D NAP sing 345 n n C2D H2D NAP sing 346 n n O2D HO2N NAP sing 347 n n C1D N1N NAP sing 348 n n C1D H1D NAP sing 349 n n N1N C2N NAP sing 350 n y N1N C6N NAP doub 351 n y C2N C3N NAP doub 352 n y C2N H2N NAP sing 353 n n C3N C7N NAP sing 354 n n C3N C4N NAP sing 355 n y C7N O7N NAP doub 356 n n C7N N7N NAP sing 357 n n N7N H71N NAP sing 358 n n N7N H72N NAP sing 359 n n C4N C5N NAP doub 360 n y C4N H4N NAP sing 361 n n C5N C6N NAP sing 362 n y C5N H5N NAP sing 363 n n C6N H6N NAP sing 364 n n P2B O1X NAP doub 365 n n P2B O2X NAP sing 366 n n P2B O3X NAP sing 367 n n O2X HOP2 NAP sing 368 n n O3X HOP3 NAP sing 369 n n # _atom_sites.entry_id 1RB2 _atom_sites.fract_transf_matrix[1][1] 0.023934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003804 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FOL A 1 161 161 FOL FOL . D 3 NAP A 1 164 164 NAP NAP . E 2 FOL B 1 161 161 FOL FOL . F 3 NAP B 1 164 164 NAP NAP . G 4 HOH A 1 401 401 HOH HOH . G 4 HOH A 2 404 404 HOH HOH . G 4 HOH A 3 409 409 HOH HOH . G 4 HOH A 4 412 412 HOH HOH . G 4 HOH A 5 413 413 HOH HOH . G 4 HOH A 6 417 417 HOH HOH . G 4 HOH A 7 420 420 HOH HOH . G 4 HOH A 8 423 423 HOH HOH . G 4 HOH A 9 424 424 HOH HOH . G 4 HOH A 10 425 425 HOH HOH . G 4 HOH A 11 426 426 HOH HOH . G 4 HOH A 12 427 427 HOH HOH . G 4 HOH A 13 428 428 HOH HOH . G 4 HOH A 14 429 429 HOH HOH . G 4 HOH A 15 430 430 HOH HOH . G 4 HOH A 16 434 434 HOH HOH . G 4 HOH A 17 435 435 HOH HOH . G 4 HOH A 18 438 438 HOH HOH . G 4 HOH A 19 439 439 HOH HOH . G 4 HOH A 20 442 442 HOH HOH . G 4 HOH A 21 443 443 HOH HOH . G 4 HOH A 22 444 444 HOH HOH . G 4 HOH A 23 445 445 HOH HOH . G 4 HOH A 24 446 446 HOH HOH . G 4 HOH A 25 447 447 HOH HOH . G 4 HOH A 26 448 448 HOH HOH . G 4 HOH A 27 450 450 HOH HOH . G 4 HOH A 28 451 451 HOH HOH . G 4 HOH A 29 452 452 HOH HOH . G 4 HOH A 30 453 453 HOH HOH . G 4 HOH A 31 454 454 HOH HOH . G 4 HOH A 32 459 459 HOH HOH . G 4 HOH A 33 462 462 HOH HOH . G 4 HOH A 34 463 463 HOH HOH . G 4 HOH A 35 464 464 HOH HOH . G 4 HOH A 36 465 465 HOH HOH . G 4 HOH A 37 468 468 HOH HOH . G 4 HOH A 38 470 470 HOH HOH . G 4 HOH A 39 471 471 HOH HOH . G 4 HOH A 40 473 473 HOH HOH . G 4 HOH A 41 477 477 HOH HOH . G 4 HOH A 42 479 479 HOH HOH . G 4 HOH A 43 482 482 HOH HOH . G 4 HOH A 44 484 484 HOH HOH . H 4 HOH B 1 400 400 HOH HOH . H 4 HOH B 2 402 402 HOH HOH . H 4 HOH B 3 405 405 HOH HOH . H 4 HOH B 4 406 406 HOH HOH . H 4 HOH B 5 407 407 HOH HOH . H 4 HOH B 6 408 408 HOH HOH . H 4 HOH B 7 410 410 HOH HOH . H 4 HOH B 8 411 411 HOH HOH . H 4 HOH B 9 415 415 HOH HOH . H 4 HOH B 10 416 416 HOH HOH . H 4 HOH B 11 418 418 HOH HOH . H 4 HOH B 12 419 419 HOH HOH . H 4 HOH B 13 431 431 HOH HOH . H 4 HOH B 14 432 432 HOH HOH . H 4 HOH B 15 433 433 HOH HOH . H 4 HOH B 16 436 436 HOH HOH . H 4 HOH B 17 437 437 HOH HOH . H 4 HOH B 18 440 440 HOH HOH . H 4 HOH B 19 441 441 HOH HOH . H 4 HOH B 20 449 449 HOH HOH . H 4 HOH B 21 455 455 HOH HOH . H 4 HOH B 22 456 456 HOH HOH . H 4 HOH B 23 457 457 HOH HOH . H 4 HOH B 24 460 460 HOH HOH . H 4 HOH B 25 461 461 HOH HOH . H 4 HOH B 26 466 466 HOH HOH . H 4 HOH B 27 469 469 HOH HOH . H 4 HOH B 28 472 472 HOH HOH . H 4 HOH B 29 474 474 HOH HOH . H 4 HOH B 30 476 476 HOH HOH . H 4 HOH B 31 478 478 HOH HOH . H 4 HOH B 32 480 480 HOH HOH . H 4 HOH B 33 481 481 HOH HOH . H 4 HOH B 34 483 483 HOH HOH . H 4 HOH B 35 485 485 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 3 -0.322 58.214 29.591 1 15.55 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . D 3 -0.271 59.651 29.224 1 5.88 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . D 3 0.638 57.222 29.054 1 18.66 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . D 3 -0.163 58.138 31.159 1 22.25 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . D 3 -0.521 59.259 31.998 1 28.42 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . D 3 0.01 59.073 33.403 1 22.33 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . D 3 1.319 59.687 33.518 1 18.04 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . D 3 -0.831 59.521 34.605 1 24.55 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . D 3 -1.644 58.485 35.129 1 17.66 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . D 3 0.205 60.073 35.592 1 23.21 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . D 3 0.913 59.022 36.231 1 24.52 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . D 3 1.275 60.531 34.627 1 21.99 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . D 3 1.152 61.932 34.276 1 17.85 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . D 3 0.633 62.584 33.17 1 13.26 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . D 3 0.713 63.915 33.269 1 18.04 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . D 3 1.326 64.12 34.538 1 14.2 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . D 3 1.704 65.271 35.245 1 15.71 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . D 3 1.559 66.525 34.795 1 13.56 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . D 3 2.268 65.083 36.46 1 24.11 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . D 3 2.443 63.829 36.939 1 24.43 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . D 3 2.141 62.667 36.372 1 24.36 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . D 3 1.584 62.896 35.16 1 21.04 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . D 3 -1.746 57.554 29.606 1 21.69 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . D 3 -3.08 57.462 28.66 1 20.69 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . D 3 -3.524 58.845 28.413 1 23.16 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . D 3 -4.007 56.48 29.277 1 22.99 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . D 3 -2.328 56.925 27.369 1 24.8 ? O5D NAP 164 A 1 HETATM 28 C C5D NAP . . . D 3 -1.553 55.648 27.448 1 25.46 ? C5D NAP 164 A 1 HETATM 29 C C4D NAP . . . D 3 -2.2 55.038 26.142 1 36.27 ? C4D NAP 164 A 1 HETATM 30 O O4D NAP . . . D 3 -1.618 55.804 25.031 1 34.09 ? O4D NAP 164 A 1 HETATM 31 C C3D NAP . . . D 3 -2.054 53.503 25.833 1 38.36 ? C3D NAP 164 A 1 HETATM 32 O O3D NAP . . . D 3 -3.128 52.694 25.56 1 29.74 ? O3D NAP 164 A 1 HETATM 33 C C2D NAP . . . D 3 -0.945 53.476 24.731 1 45.28 ? C2D NAP 164 A 1 HETATM 34 O O2D NAP . . . D 3 -0.939 52.227 24.158 1 48.21 ? O2D NAP 164 A 1 HETATM 35 C C1D NAP . . . D 3 -1.193 54.754 24.099 1 41.26 ? C1D NAP 164 A 1 HETATM 36 N N1N NAP . . . D 3 -0.161 55.462 23.215 1 42.68 ? N1N NAP 164 A 1 HETATM 37 C C2N NAP . . . D 3 -0.225 55.424 21.824 1 41.97 ? C2N NAP 164 A 1 HETATM 38 C C3N NAP . . . D 3 0.675 56.062 21.13 1 41.37 ? C3N NAP 164 A 1 HETATM 39 C C7N NAP . . . D 3 0.504 55.961 19.678 1 36.26 ? C7N NAP 164 A 1 HETATM 40 O O7N NAP . . . D 3 1.242 56.643 18.898 1 36.67 ? O7N NAP 164 A 1 HETATM 41 N N7N NAP . . . D 3 -0.614 55.314 19.293 1 31.45 ? N7N NAP 164 A 1 HETATM 42 C C4N NAP . . . D 3 1.845 56.892 21.714 1 28.06 ? C4N NAP 164 A 1 HETATM 43 C C5N NAP . . . D 3 1.75 56.84 23.242 1 38.08 ? C5N NAP 164 A 1 HETATM 44 C C6N NAP . . . D 3 0.819 56.183 23.848 1 38.56 ? C6N NAP 164 A 1 HETATM 45 P P2B NAP . . . D 3 0.418 58.546 37.676 1 25.31 ? P2B NAP 164 A 1 HETATM 46 O O1X NAP . . . D 3 1.372 57.365 38.042 1 24.16 ? O1X NAP 164 A 1 HETATM 47 O O2X NAP . . . D 3 0.467 59.726 38.607 1 14.26 ? O2X NAP 164 A 1 HETATM 48 O O3X NAP . . . D 3 -0.931 57.877 37.557 1 19.59 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #