data_1RB3 # _model_server_result.job_id Ec0jSzuZ71pYM_PyVVA3KQ _model_server_result.datetime_utc '2024-12-03 18:01:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":161}' # _entry.id 1RB3 # _exptl.entry_id 1RB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.26 _cell.angle_gamma 90 _cell.entry_id 1RB3 _cell.length_a 41.58 _cell.length_b 74.18 _cell.length_c 59.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 64 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 64 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id O2X _struct_conn.ptnr2_label_comp_id NAP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id NAP _struct_conn.ptnr2_auth_seq_id 164 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.37 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RB3 _atom_sites.fract_transf_matrix[1][1] 0.02405 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003921 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MTX A 1 161 161 MTX MTX . D 3 NAP A 1 164 164 NAP NAP . E 2 MTX B 1 161 161 MTX MTX . F 3 NAP B 1 164 164 NAP NAP . G 4 HOH A 1 403 403 HOH HOH . G 4 HOH A 2 405 405 HOH HOH . G 4 HOH A 3 406 406 HOH HOH . G 4 HOH A 4 409 409 HOH HOH . G 4 HOH A 5 410 410 HOH HOH . G 4 HOH A 6 412 412 HOH HOH . G 4 HOH A 7 413 413 HOH HOH . G 4 HOH A 8 414 414 HOH HOH . G 4 HOH A 9 416 416 HOH HOH . G 4 HOH A 10 421 421 HOH HOH . G 4 HOH A 11 422 422 HOH HOH . G 4 HOH A 12 427 427 HOH HOH . G 4 HOH A 13 432 432 HOH HOH . G 4 HOH A 14 433 433 HOH HOH . G 4 HOH A 15 437 437 HOH HOH . G 4 HOH A 16 440 440 HOH HOH . G 4 HOH A 17 450 450 HOH HOH . G 4 HOH A 18 453 453 HOH HOH . G 4 HOH A 19 454 454 HOH HOH . G 4 HOH A 20 456 456 HOH HOH . G 4 HOH A 21 457 457 HOH HOH . G 4 HOH A 22 459 459 HOH HOH . G 4 HOH A 23 463 463 HOH HOH . G 4 HOH A 24 466 466 HOH HOH . G 4 HOH A 25 469 469 HOH HOH . G 4 HOH A 26 470 470 HOH HOH . G 4 HOH A 27 474 474 HOH HOH . G 4 HOH A 28 477 477 HOH HOH . G 4 HOH A 29 478 478 HOH HOH . G 4 HOH A 30 483 483 HOH HOH . G 4 HOH A 31 485 485 HOH HOH . G 4 HOH A 32 486 486 HOH HOH . G 4 HOH A 33 491 491 HOH HOH . G 4 HOH A 34 492 492 HOH HOH . G 4 HOH A 35 494 494 HOH HOH . G 4 HOH A 36 496 496 HOH HOH . G 4 HOH A 37 497 497 HOH HOH . G 4 HOH A 38 499 499 HOH HOH . G 4 HOH A 39 500 500 HOH HOH . G 4 HOH A 40 502 502 HOH HOH . G 4 HOH A 41 503 503 HOH HOH . G 4 HOH A 42 504 504 HOH HOH . G 4 HOH A 43 505 505 HOH HOH . G 4 HOH A 44 506 506 HOH HOH . G 4 HOH A 45 507 507 HOH HOH . G 4 HOH A 46 508 508 HOH HOH . G 4 HOH A 47 513 513 HOH HOH . G 4 HOH A 48 514 514 HOH HOH . G 4 HOH A 49 516 516 HOH HOH . G 4 HOH A 50 517 517 HOH HOH . G 4 HOH A 51 523 523 HOH HOH . G 4 HOH A 52 524 524 HOH HOH . G 4 HOH A 53 528 528 HOH HOH . G 4 HOH A 54 530 530 HOH HOH . G 4 HOH A 55 531 531 HOH HOH . G 4 HOH A 56 532 532 HOH HOH . G 4 HOH A 57 537 537 HOH HOH . G 4 HOH A 58 541 541 HOH HOH . G 4 HOH A 59 542 542 HOH HOH . G 4 HOH A 60 544 544 HOH HOH . G 4 HOH A 61 545 545 HOH HOH . G 4 HOH A 62 549 549 HOH HOH . G 4 HOH A 63 550 550 HOH HOH . G 4 HOH A 64 551 551 HOH HOH . H 4 HOH B 1 400 400 HOH HOH . H 4 HOH B 2 401 401 HOH HOH . H 4 HOH B 3 402 402 HOH HOH . H 4 HOH B 4 404 404 HOH HOH . H 4 HOH B 5 407 407 HOH HOH . H 4 HOH B 6 408 408 HOH HOH . H 4 HOH B 7 411 411 HOH HOH . H 4 HOH B 8 415 415 HOH HOH . H 4 HOH B 9 417 417 HOH HOH . H 4 HOH B 10 418 418 HOH HOH . H 4 HOH B 11 419 419 HOH HOH . H 4 HOH B 12 420 420 HOH HOH . H 4 HOH B 13 424 424 HOH HOH . H 4 HOH B 14 425 425 HOH HOH . H 4 HOH B 15 426 426 HOH HOH . H 4 HOH B 16 430 430 HOH HOH . H 4 HOH B 17 431 431 HOH HOH . H 4 HOH B 18 435 435 HOH HOH . H 4 HOH B 19 436 436 HOH HOH . H 4 HOH B 20 438 438 HOH HOH . H 4 HOH B 21 439 439 HOH HOH . H 4 HOH B 22 441 441 HOH HOH . H 4 HOH B 23 442 442 HOH HOH . H 4 HOH B 24 443 443 HOH HOH . H 4 HOH B 25 444 444 HOH HOH . H 4 HOH B 26 446 446 HOH HOH . H 4 HOH B 27 447 447 HOH HOH . H 4 HOH B 28 451 451 HOH HOH . H 4 HOH B 29 458 458 HOH HOH . H 4 HOH B 30 460 460 HOH HOH . H 4 HOH B 31 461 461 HOH HOH . H 4 HOH B 32 462 462 HOH HOH . H 4 HOH B 33 464 464 HOH HOH . H 4 HOH B 34 465 465 HOH HOH . H 4 HOH B 35 467 467 HOH HOH . H 4 HOH B 36 468 468 HOH HOH . H 4 HOH B 37 472 472 HOH HOH . H 4 HOH B 38 473 473 HOH HOH . H 4 HOH B 39 475 475 HOH HOH . H 4 HOH B 40 476 476 HOH HOH . H 4 HOH B 41 479 479 HOH HOH . H 4 HOH B 42 480 480 HOH HOH . H 4 HOH B 43 481 481 HOH HOH . H 4 HOH B 44 482 482 HOH HOH . H 4 HOH B 45 484 484 HOH HOH . H 4 HOH B 46 487 487 HOH HOH . H 4 HOH B 47 488 488 HOH HOH . H 4 HOH B 48 489 489 HOH HOH . H 4 HOH B 49 493 493 HOH HOH . H 4 HOH B 50 495 495 HOH HOH . H 4 HOH B 51 498 498 HOH HOH . H 4 HOH B 52 501 501 HOH HOH . H 4 HOH B 53 510 510 HOH HOH . H 4 HOH B 54 511 511 HOH HOH . H 4 HOH B 55 512 512 HOH HOH . H 4 HOH B 56 515 515 HOH HOH . H 4 HOH B 57 518 518 HOH HOH . H 4 HOH B 58 522 522 HOH HOH . H 4 HOH B 59 526 526 HOH HOH . H 4 HOH B 60 527 527 HOH HOH . H 4 HOH B 61 529 529 HOH HOH . H 4 HOH B 62 533 533 HOH HOH . H 4 HOH B 63 536 536 HOH HOH . H 4 HOH B 64 538 538 HOH HOH . H 4 HOH B 65 539 539 HOH HOH . H 4 HOH B 66 543 543 HOH HOH . H 4 HOH B 67 546 546 HOH HOH . H 4 HOH B 68 547 547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . C 2 4.414 54.585 16.178 1 12.44 ? N1 MTX 161 A 1 HETATM 2 C C2 MTX . . . C 2 4.57 55.902 15.936 1 16.04 ? C2 MTX 161 A 1 HETATM 3 N NA2 MTX . . . C 2 4.625 56.444 14.782 1 14.41 ? NA2 MTX 161 A 1 HETATM 4 N N3 MTX . . . C 2 4.68 56.786 17.001 1 21.53 ? N3 MTX 161 A 1 HETATM 5 C C4 MTX . . . C 2 4.64 56.431 18.297 1 16.33 ? C4 MTX 161 A 1 HETATM 6 N NA4 MTX . . . C 2 4.751 57.292 19.221 1 13.45 ? NA4 MTX 161 A 1 HETATM 7 C C4A MTX . . . C 2 4.481 55.018 18.548 1 13.17 ? C4A MTX 161 A 1 HETATM 8 N N5 MTX . . . C 2 4.652 54.638 19.834 1 12.81 ? N5 MTX 161 A 1 HETATM 9 C C6 MTX . . . C 2 4.739 53.321 20.021 1 11.15 ? C6 MTX 161 A 1 HETATM 10 C C7 MTX . . . C 2 4.648 52.462 18.872 1 15.17 ? C7 MTX 161 A 1 HETATM 11 N N8 MTX . . . C 2 4.485 52.816 17.611 1 10.5 ? N8 MTX 161 A 1 HETATM 12 C C8A MTX . . . C 2 4.393 54.16 17.488 1 14.9 ? C8A MTX 161 A 1 HETATM 13 C C9 MTX . . . C 2 4.923 52.937 21.441 1 9.91 ? C9 MTX 161 A 1 HETATM 14 N N10 MTX . . . C 2 5.24 51.497 21.587 1 8.73 ? N10 MTX 161 A 1 HETATM 15 C CM MTX . . . C 2 4.153 50.569 21.526 1 1 ? CM MTX 161 A 1 HETATM 16 C C11 MTX . . . C 2 8.734 49.996 20.189 1 18.11 ? C11 MTX 161 A 1 HETATM 17 C C12 MTX . . . C 2 7.758 49.187 20.73 1 19.83 ? C12 MTX 161 A 1 HETATM 18 C C13 MTX . . . C 2 6.595 49.691 21.194 1 16.24 ? C13 MTX 161 A 1 HETATM 19 C C14 MTX . . . C 2 6.421 51.062 21.105 1 13.41 ? C14 MTX 161 A 1 HETATM 20 C C15 MTX . . . C 2 7.326 51.885 20.589 1 19.92 ? C15 MTX 161 A 1 HETATM 21 C C16 MTX . . . C 2 8.525 51.324 20.12 1 16.16 ? C16 MTX 161 A 1 HETATM 22 C C MTX . . . C 2 9.941 49.469 19.682 1 25.11 ? C MTX 161 A 1 HETATM 23 O O MTX . . . C 2 10.135 48.259 19.644 1 25.59 ? O MTX 161 A 1 HETATM 24 N N MTX . . . C 2 10.746 50.273 19.044 1 24.25 ? N MTX 161 A 1 HETATM 25 C CA MTX . . . C 2 12.071 49.8 18.648 1 19.14 ? CA MTX 161 A 1 HETATM 26 C CT MTX . . . C 2 12.976 50.89 18.607 1 21.2 ? CT MTX 161 A 1 HETATM 27 O O1 MTX . . . C 2 12.465 51.985 18.307 1 18.86 ? O1 MTX 161 A 1 HETATM 28 O O2 MTX . . . C 2 14.191 50.597 18.913 1 24.13 ? O2 MTX 161 A 1 HETATM 29 C CB MTX . . . C 2 12.062 49.303 17.223 1 21.66 ? CB MTX 161 A 1 HETATM 30 C CG MTX . . . C 2 12.488 47.793 17.46 1 37.07 ? CG MTX 161 A 1 HETATM 31 C CD MTX . . . C 2 11.975 47.014 16.288 1 47.95 ? CD MTX 161 A 1 HETATM 32 O OE1 MTX . . . C 2 12.213 47.735 15.229 1 51.35 ? OE1 MTX 161 A 1 HETATM 33 O OE2 MTX . . . C 2 11.332 45.919 16.439 1 43.95 ? OE2 MTX 161 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #