data_1RB3 # _model_server_result.job_id jhLmUJuIKbTybfkNS0V2KQ _model_server_result.datetime_utc '2024-11-04 20:30:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":164}' # _entry.id 1RB3 # _exptl.entry_id 1RB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.26 _cell.angle_gamma 90 _cell.entry_id 1RB3 _cell.length_a 41.58 _cell.length_b 74.18 _cell.length_c 59.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 64 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 64 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id O2X _struct_conn.ptnr2_label_comp_id NAP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id NAP _struct_conn.ptnr2_auth_seq_id 164 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.37 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # _atom_sites.entry_id 1RB3 _atom_sites.fract_transf_matrix[1][1] 0.02405 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003921 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MTX A 1 161 161 MTX MTX . D 3 NAP A 1 164 164 NAP NAP . E 2 MTX B 1 161 161 MTX MTX . F 3 NAP B 1 164 164 NAP NAP . G 4 HOH A 1 403 403 HOH HOH . G 4 HOH A 2 405 405 HOH HOH . G 4 HOH A 3 406 406 HOH HOH . G 4 HOH A 4 409 409 HOH HOH . G 4 HOH A 5 410 410 HOH HOH . G 4 HOH A 6 412 412 HOH HOH . G 4 HOH A 7 413 413 HOH HOH . G 4 HOH A 8 414 414 HOH HOH . G 4 HOH A 9 416 416 HOH HOH . G 4 HOH A 10 421 421 HOH HOH . G 4 HOH A 11 422 422 HOH HOH . G 4 HOH A 12 427 427 HOH HOH . G 4 HOH A 13 432 432 HOH HOH . G 4 HOH A 14 433 433 HOH HOH . G 4 HOH A 15 437 437 HOH HOH . G 4 HOH A 16 440 440 HOH HOH . G 4 HOH A 17 450 450 HOH HOH . G 4 HOH A 18 453 453 HOH HOH . G 4 HOH A 19 454 454 HOH HOH . G 4 HOH A 20 456 456 HOH HOH . G 4 HOH A 21 457 457 HOH HOH . G 4 HOH A 22 459 459 HOH HOH . G 4 HOH A 23 463 463 HOH HOH . G 4 HOH A 24 466 466 HOH HOH . G 4 HOH A 25 469 469 HOH HOH . G 4 HOH A 26 470 470 HOH HOH . G 4 HOH A 27 474 474 HOH HOH . G 4 HOH A 28 477 477 HOH HOH . G 4 HOH A 29 478 478 HOH HOH . G 4 HOH A 30 483 483 HOH HOH . G 4 HOH A 31 485 485 HOH HOH . G 4 HOH A 32 486 486 HOH HOH . G 4 HOH A 33 491 491 HOH HOH . G 4 HOH A 34 492 492 HOH HOH . G 4 HOH A 35 494 494 HOH HOH . G 4 HOH A 36 496 496 HOH HOH . G 4 HOH A 37 497 497 HOH HOH . G 4 HOH A 38 499 499 HOH HOH . G 4 HOH A 39 500 500 HOH HOH . G 4 HOH A 40 502 502 HOH HOH . G 4 HOH A 41 503 503 HOH HOH . G 4 HOH A 42 504 504 HOH HOH . G 4 HOH A 43 505 505 HOH HOH . G 4 HOH A 44 506 506 HOH HOH . G 4 HOH A 45 507 507 HOH HOH . G 4 HOH A 46 508 508 HOH HOH . G 4 HOH A 47 513 513 HOH HOH . G 4 HOH A 48 514 514 HOH HOH . G 4 HOH A 49 516 516 HOH HOH . G 4 HOH A 50 517 517 HOH HOH . G 4 HOH A 51 523 523 HOH HOH . G 4 HOH A 52 524 524 HOH HOH . G 4 HOH A 53 528 528 HOH HOH . G 4 HOH A 54 530 530 HOH HOH . G 4 HOH A 55 531 531 HOH HOH . G 4 HOH A 56 532 532 HOH HOH . G 4 HOH A 57 537 537 HOH HOH . G 4 HOH A 58 541 541 HOH HOH . G 4 HOH A 59 542 542 HOH HOH . G 4 HOH A 60 544 544 HOH HOH . G 4 HOH A 61 545 545 HOH HOH . G 4 HOH A 62 549 549 HOH HOH . G 4 HOH A 63 550 550 HOH HOH . G 4 HOH A 64 551 551 HOH HOH . H 4 HOH B 1 400 400 HOH HOH . H 4 HOH B 2 401 401 HOH HOH . H 4 HOH B 3 402 402 HOH HOH . H 4 HOH B 4 404 404 HOH HOH . H 4 HOH B 5 407 407 HOH HOH . H 4 HOH B 6 408 408 HOH HOH . H 4 HOH B 7 411 411 HOH HOH . H 4 HOH B 8 415 415 HOH HOH . H 4 HOH B 9 417 417 HOH HOH . H 4 HOH B 10 418 418 HOH HOH . H 4 HOH B 11 419 419 HOH HOH . H 4 HOH B 12 420 420 HOH HOH . H 4 HOH B 13 424 424 HOH HOH . H 4 HOH B 14 425 425 HOH HOH . H 4 HOH B 15 426 426 HOH HOH . H 4 HOH B 16 430 430 HOH HOH . H 4 HOH B 17 431 431 HOH HOH . H 4 HOH B 18 435 435 HOH HOH . H 4 HOH B 19 436 436 HOH HOH . H 4 HOH B 20 438 438 HOH HOH . H 4 HOH B 21 439 439 HOH HOH . H 4 HOH B 22 441 441 HOH HOH . H 4 HOH B 23 442 442 HOH HOH . H 4 HOH B 24 443 443 HOH HOH . H 4 HOH B 25 444 444 HOH HOH . H 4 HOH B 26 446 446 HOH HOH . H 4 HOH B 27 447 447 HOH HOH . H 4 HOH B 28 451 451 HOH HOH . H 4 HOH B 29 458 458 HOH HOH . H 4 HOH B 30 460 460 HOH HOH . H 4 HOH B 31 461 461 HOH HOH . H 4 HOH B 32 462 462 HOH HOH . H 4 HOH B 33 464 464 HOH HOH . H 4 HOH B 34 465 465 HOH HOH . H 4 HOH B 35 467 467 HOH HOH . H 4 HOH B 36 468 468 HOH HOH . H 4 HOH B 37 472 472 HOH HOH . H 4 HOH B 38 473 473 HOH HOH . H 4 HOH B 39 475 475 HOH HOH . H 4 HOH B 40 476 476 HOH HOH . H 4 HOH B 41 479 479 HOH HOH . H 4 HOH B 42 480 480 HOH HOH . H 4 HOH B 43 481 481 HOH HOH . H 4 HOH B 44 482 482 HOH HOH . H 4 HOH B 45 484 484 HOH HOH . H 4 HOH B 46 487 487 HOH HOH . H 4 HOH B 47 488 488 HOH HOH . H 4 HOH B 48 489 489 HOH HOH . H 4 HOH B 49 493 493 HOH HOH . H 4 HOH B 50 495 495 HOH HOH . H 4 HOH B 51 498 498 HOH HOH . H 4 HOH B 52 501 501 HOH HOH . H 4 HOH B 53 510 510 HOH HOH . H 4 HOH B 54 511 511 HOH HOH . H 4 HOH B 55 512 512 HOH HOH . H 4 HOH B 56 515 515 HOH HOH . H 4 HOH B 57 518 518 HOH HOH . H 4 HOH B 58 522 522 HOH HOH . H 4 HOH B 59 526 526 HOH HOH . H 4 HOH B 60 527 527 HOH HOH . H 4 HOH B 61 529 529 HOH HOH . H 4 HOH B 62 533 533 HOH HOH . H 4 HOH B 63 536 536 HOH HOH . H 4 HOH B 64 538 538 HOH HOH . H 4 HOH B 65 539 539 HOH HOH . H 4 HOH B 66 543 543 HOH HOH . H 4 HOH B 67 546 546 HOH HOH . H 4 HOH B 68 547 547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 3 -0.351 57.825 28.804 1 11.77 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . D 3 -0.331 59.229 28.334 1 4.11 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . D 3 0.788 57.011 28.276 1 15.22 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . D 3 -0.319 57.714 30.363 1 12.45 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . D 3 -0.846 58.748 31.2 1 7.29 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . D 3 -0.228 58.557 32.564 1 13.6 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . D 3 0.982 59.355 32.515 1 17.57 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . D 3 -0.988 59.119 33.746 1 12.59 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . D 3 -1.824 58.141 34.31 1 13.76 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . D 3 0.081 59.598 34.723 1 14.64 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . D 3 0.694 58.478 35.354 1 16.55 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . D 3 1.122 60.085 33.713 1 19.8 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . D 3 1.102 61.53 33.483 1 17.65 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . D 3 0.687 62.242 32.384 1 18.69 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . D 3 0.806 63.554 32.52 1 20.62 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . D 3 1.34 63.69 33.816 1 25.3 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . D 3 1.732 64.809 34.584 1 19.82 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . D 3 1.598 66.075 34.134 1 10.19 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . D 3 2.238 64.568 35.855 1 18.47 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . D 3 2.322 63.314 36.29 1 15.3 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . D 3 2.002 62.192 35.626 1 22.35 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . D 3 1.531 62.444 34.407 1 19.26 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . D 3 -1.762 57.138 28.7 1 13.89 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . D 3 -3.104 57.572 27.861 1 16.84 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . D 3 -2.838 57.317 26.436 1 21.72 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . D 3 -3.524 58.934 28.271 1 16.7 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . D 3 -4.183 56.485 28.219 1 19 ? O5D NAP 164 A 1 HETATM 28 C C5D NAP . . . D 3 -4.297 56.124 29.66 1 32.07 ? C5D NAP 164 A 1 HETATM 29 C C4D NAP . . . D 3 -5.211 54.898 29.283 1 30.68 ? C4D NAP 164 A 1 HETATM 30 O O4D NAP . . . D 3 -4.552 53.828 28.563 1 37.28 ? O4D NAP 164 A 1 HETATM 31 C C3D NAP . . . D 3 -6.631 54.373 29.655 1 36.18 ? C3D NAP 164 A 1 HETATM 32 O O3D NAP . . . D 3 -7.205 54.885 28.523 1 44.82 ? O3D NAP 164 A 1 HETATM 33 C C2D NAP . . . D 3 -6.509 52.864 29.289 1 41.12 ? C2D NAP 164 A 1 HETATM 34 O O2D NAP . . . D 3 -7.65 52.59 28.585 1 41.51 ? O2D NAP 164 A 1 HETATM 35 C C1D NAP . . . D 3 -5.563 52.85 28.234 1 37.68 ? C1D NAP 164 A 1 HETATM 36 P P2B NAP . . . D 3 0.334 58.02 36.848 1 17.9 ? P2B NAP 164 A 1 HETATM 37 O O1X NAP . . . D 3 1.382 56.939 37.302 1 11.47 ? O1X NAP 164 A 1 HETATM 38 O O2X NAP . . . D 3 0.071 59.206 37.75 1 18.6 ? O2X NAP 164 A 1 HETATM 39 O O3X NAP . . . D 3 -0.964 57.304 36.573 1 18.09 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #