data_1RBD # _model_server_result.job_id a1S3uq2sqlHxezt0WRoX4A _model_server_result.datetime_utc '2024-10-20 00:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":125}' # _entry.id 1RBD # _exptl.entry_id 1RBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RBD _cell.length_a 44.45 _cell.length_b 44.45 _cell.length_c 97.18 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 6 A CYS 26 1_555 B SG CYS 64 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 20 A CYS 40 1_555 B SG CYS 75 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf3 B SG CYS 38 A CYS 58 1_555 B SG CYS 90 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf4 B SG CYS 45 A CYS 65 1_555 B SG CYS 52 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? covale ? covale1 A C SER 15 S SER 15 1_555 A N NH2 16 S NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C HIS 12 S HIS 12 1_555 A N ABA 13 S ABA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ABA 13 S ABA 13 1_555 A N ASP 14 S ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RBD _atom_sites.fract_transf_matrix[1][1] 0.022497 _atom_sites.fract_transf_matrix[1][2] 0.012989 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 125 125 SO4 SO4 . D 4 HOH S 1 202 202 HOH HOH . D 4 HOH S 2 219 219 HOH HOH . D 4 HOH S 3 224 224 HOH HOH . D 4 HOH S 4 225 225 HOH HOH . D 4 HOH S 5 230 230 HOH HOH . D 4 HOH S 6 233 233 HOH HOH . D 4 HOH S 7 237 237 HOH HOH . D 4 HOH S 8 265 265 HOH HOH . D 4 HOH S 9 268 268 HOH HOH . D 4 HOH S 10 302 302 HOH HOH . D 4 HOH S 11 316 316 HOH HOH . E 4 HOH A 1 201 201 HOH HOH . E 4 HOH A 2 203 203 HOH HOH . E 4 HOH A 3 204 204 HOH HOH . E 4 HOH A 4 205 205 HOH HOH . E 4 HOH A 5 207 207 HOH HOH . E 4 HOH A 6 208 208 HOH HOH . E 4 HOH A 7 209 209 HOH HOH . E 4 HOH A 8 210 210 HOH HOH . E 4 HOH A 9 211 211 HOH HOH . E 4 HOH A 10 212 212 HOH HOH . E 4 HOH A 11 213 213 HOH HOH . E 4 HOH A 12 214 214 HOH HOH . E 4 HOH A 13 215 215 HOH HOH . E 4 HOH A 14 216 216 HOH HOH . E 4 HOH A 15 217 217 HOH HOH . E 4 HOH A 16 218 218 HOH HOH . E 4 HOH A 17 221 221 HOH HOH . E 4 HOH A 18 222 222 HOH HOH . E 4 HOH A 19 223 223 HOH HOH . E 4 HOH A 20 226 226 HOH HOH . E 4 HOH A 21 227 227 HOH HOH . E 4 HOH A 22 228 228 HOH HOH . E 4 HOH A 23 231 231 HOH HOH . E 4 HOH A 24 235 235 HOH HOH . E 4 HOH A 25 236 236 HOH HOH . E 4 HOH A 26 249 249 HOH HOH . E 4 HOH A 27 250 250 HOH HOH . E 4 HOH A 28 251 251 HOH HOH . E 4 HOH A 29 252 252 HOH HOH . E 4 HOH A 30 255 255 HOH HOH . E 4 HOH A 31 256 256 HOH HOH . E 4 HOH A 32 257 257 HOH HOH . E 4 HOH A 33 259 259 HOH HOH . E 4 HOH A 34 263 263 HOH HOH . E 4 HOH A 35 264 264 HOH HOH . E 4 HOH A 36 266 266 HOH HOH . E 4 HOH A 37 267 267 HOH HOH . E 4 HOH A 38 269 269 HOH HOH . E 4 HOH A 39 270 270 HOH HOH . E 4 HOH A 40 276 276 HOH HOH . E 4 HOH A 41 308 308 HOH HOH . E 4 HOH A 42 334 334 HOH HOH . E 4 HOH A 43 340 340 HOH HOH . E 4 HOH A 44 404 404 HOH HOH . E 4 HOH A 45 504 504 HOH HOH . E 4 HOH A 46 603 603 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 3 -9.346 -3.778 8.058 1 43.11 ? S SO4 125 A 1 HETATM 2 O O1 SO4 . . . C 3 -10.311 -3.664 7.02 1 81.65 ? O1 SO4 125 A 1 HETATM 3 O O2 SO4 . . . C 3 -9.715 -4.85 8.912 1 75.9 ? O2 SO4 125 A 1 HETATM 4 O O3 SO4 . . . C 3 -9.333 -2.577 8.812 1 75.92 ? O3 SO4 125 A 1 HETATM 5 O O4 SO4 . . . C 3 -8.043 -4.014 7.555 1 89.76 ? O4 SO4 125 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #