data_1RBP # _model_server_result.job_id sRA6VulsDZSDh_3AokuMvg _model_server_result.datetime_utc '2024-11-24 01:17:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":183}' # _entry.id 1RBP # _exptl.entry_id 1RBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RBP _cell.length_a 45.7 _cell.length_b 48.7 _cell.length_c 76.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf3 A SG CYS 120 A CYS 120 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? # _chem_comp.formula 'C20 H30 O' _chem_comp.formula_weight 286.452 _chem_comp.id RTL _chem_comp.mon_nstd_flag . _chem_comp.name RETINOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RTL sing 277 n n C1 C6 RTL sing 278 n n C1 C16 RTL sing 279 n n C1 C17 RTL sing 280 n n C2 C3 RTL sing 281 n n C2 H21 RTL sing 282 n n C2 H22 RTL sing 283 n n C3 C4 RTL sing 284 n n C3 H31 RTL sing 285 n n C3 H32 RTL sing 286 n n C4 C5 RTL sing 287 n n C4 H41 RTL sing 288 n n C4 H42 RTL sing 289 n n C5 C6 RTL doub 290 n n C5 C18 RTL sing 291 n n C6 C7 RTL sing 292 n n C7 C8 RTL doub 293 e n C7 H7 RTL sing 294 n n C8 C9 RTL sing 295 n n C8 H8 RTL sing 296 n n C9 C10 RTL doub 297 e n C9 C19 RTL sing 298 n n C10 C11 RTL sing 299 n n C10 H10 RTL sing 300 n n C11 C12 RTL doub 301 e n C11 H11 RTL sing 302 n n C12 C13 RTL sing 303 n n C12 H12 RTL sing 304 n n C13 C14 RTL doub 305 e n C13 C20 RTL sing 306 n n C14 C15 RTL sing 307 n n C14 H14 RTL sing 308 n n C15 O1 RTL sing 309 n n C15 H151 RTL sing 310 n n C15 H152 RTL sing 311 n n O1 HO1 RTL sing 312 n n C16 H161 RTL sing 313 n n C16 H162 RTL sing 314 n n C16 H163 RTL sing 315 n n C17 H171 RTL sing 316 n n C17 H172 RTL sing 317 n n C17 H173 RTL sing 318 n n C18 H181 RTL sing 319 n n C18 H182 RTL sing 320 n n C18 H183 RTL sing 321 n n C19 H191 RTL sing 322 n n C19 H192 RTL sing 323 n n C19 H193 RTL sing 324 n n C20 H201 RTL sing 325 n n C20 H202 RTL sing 326 n n C20 H203 RTL sing 327 n n # _atom_sites.entry_id 1RBP _atom_sites.fract_transf_matrix[1][1] 0.021882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RTL A 1 183 1 RTL RTL . C 3 HOH A 1 184 178 HOH HOH . C 3 HOH A 2 185 179 HOH HOH . C 3 HOH A 3 186 180 HOH HOH . C 3 HOH A 4 187 181 HOH HOH . C 3 HOH A 5 188 182 HOH HOH . C 3 HOH A 6 189 183 HOH HOH . C 3 HOH A 7 190 184 HOH HOH . C 3 HOH A 8 191 185 HOH HOH . C 3 HOH A 9 192 186 HOH HOH . C 3 HOH A 10 193 187 HOH HOH . C 3 HOH A 11 194 188 HOH HOH . C 3 HOH A 12 195 189 HOH HOH . C 3 HOH A 13 196 190 HOH HOH . C 3 HOH A 14 197 191 HOH HOH . C 3 HOH A 15 198 192 HOH HOH . C 3 HOH A 16 199 193 HOH HOH . C 3 HOH A 17 200 194 HOH HOH . C 3 HOH A 18 201 195 HOH HOH . C 3 HOH A 19 202 196 HOH HOH . C 3 HOH A 20 203 197 HOH HOH . C 3 HOH A 21 204 198 HOH HOH . C 3 HOH A 22 205 199 HOH HOH . C 3 HOH A 23 206 200 HOH HOH . C 3 HOH A 24 207 201 HOH HOH . C 3 HOH A 25 208 202 HOH HOH . C 3 HOH A 26 209 203 HOH HOH . C 3 HOH A 27 210 204 HOH HOH . C 3 HOH A 28 211 205 HOH HOH . C 3 HOH A 29 212 206 HOH HOH . C 3 HOH A 30 213 207 HOH HOH . C 3 HOH A 31 214 208 HOH HOH . C 3 HOH A 32 215 209 HOH HOH . C 3 HOH A 33 216 210 HOH HOH . C 3 HOH A 34 217 211 HOH HOH . C 3 HOH A 35 218 212 HOH HOH . C 3 HOH A 36 219 213 HOH HOH . C 3 HOH A 37 220 214 HOH HOH . C 3 HOH A 38 221 215 HOH HOH . C 3 HOH A 39 222 216 HOH HOH . C 3 HOH A 40 223 217 HOH HOH . C 3 HOH A 41 224 218 HOH HOH . C 3 HOH A 42 225 219 HOH HOH . C 3 HOH A 43 226 220 HOH HOH . C 3 HOH A 44 227 221 HOH HOH . C 3 HOH A 45 228 222 HOH HOH . C 3 HOH A 46 229 223 HOH HOH . C 3 HOH A 47 230 224 HOH HOH . C 3 HOH A 48 231 225 HOH HOH . C 3 HOH A 49 232 226 HOH HOH . C 3 HOH A 50 233 227 HOH HOH . C 3 HOH A 51 234 228 HOH HOH . C 3 HOH A 52 235 229 HOH HOH . C 3 HOH A 53 236 230 HOH HOH . C 3 HOH A 54 237 231 HOH HOH . C 3 HOH A 55 238 232 HOH HOH . C 3 HOH A 56 239 233 HOH HOH . C 3 HOH A 57 240 234 HOH HOH . C 3 HOH A 58 241 235 HOH HOH . C 3 HOH A 59 242 236 HOH HOH . C 3 HOH A 60 243 237 HOH HOH . C 3 HOH A 61 244 238 HOH HOH . C 3 HOH A 62 245 239 HOH HOH . C 3 HOH A 63 246 240 HOH HOH . C 3 HOH A 64 247 241 HOH HOH . C 3 HOH A 65 248 242 HOH HOH . C 3 HOH A 66 249 243 HOH HOH . C 3 HOH A 67 250 244 HOH HOH . C 3 HOH A 68 251 245 HOH HOH . C 3 HOH A 69 252 246 HOH HOH . C 3 HOH A 70 253 247 HOH HOH . C 3 HOH A 71 254 248 HOH HOH . C 3 HOH A 72 255 249 HOH HOH . C 3 HOH A 73 256 250 HOH HOH . C 3 HOH A 74 257 251 HOH HOH . C 3 HOH A 75 258 252 HOH HOH . C 3 HOH A 76 259 253 HOH HOH . C 3 HOH A 77 260 254 HOH HOH . C 3 HOH A 78 261 255 HOH HOH . C 3 HOH A 79 262 256 HOH HOH . C 3 HOH A 80 263 257 HOH HOH . C 3 HOH A 81 264 258 HOH HOH . C 3 HOH A 82 265 259 HOH HOH . C 3 HOH A 83 266 260 HOH HOH . C 3 HOH A 84 267 261 HOH HOH . C 3 HOH A 85 268 262 HOH HOH . C 3 HOH A 86 269 263 HOH HOH . C 3 HOH A 87 270 264 HOH HOH . C 3 HOH A 88 271 265 HOH HOH . C 3 HOH A 89 272 266 HOH HOH . C 3 HOH A 90 273 267 HOH HOH . C 3 HOH A 91 274 268 HOH HOH . C 3 HOH A 92 275 269 HOH HOH . C 3 HOH A 93 276 270 HOH HOH . C 3 HOH A 94 277 271 HOH HOH . C 3 HOH A 95 278 272 HOH HOH . C 3 HOH A 96 279 273 HOH HOH . C 3 HOH A 97 280 274 HOH HOH . C 3 HOH A 98 281 275 HOH HOH . C 3 HOH A 99 282 276 HOH HOH . C 3 HOH A 100 283 277 HOH HOH . C 3 HOH A 101 284 278 HOH HOH . C 3 HOH A 102 285 279 HOH HOH . C 3 HOH A 103 286 280 HOH HOH . C 3 HOH A 104 287 281 HOH HOH . C 3 HOH A 105 288 282 HOH HOH . C 3 HOH A 106 289 283 HOH HOH . C 3 HOH A 107 290 284 HOH HOH . C 3 HOH A 108 291 285 HOH HOH . C 3 HOH A 109 292 286 HOH HOH . C 3 HOH A 110 293 287 HOH HOH . C 3 HOH A 111 294 288 HOH HOH . C 3 HOH A 112 295 289 HOH HOH . C 3 HOH A 113 296 290 HOH HOH . C 3 HOH A 114 297 291 HOH HOH . C 3 HOH A 115 298 292 HOH HOH . C 3 HOH A 116 299 293 HOH HOH . C 3 HOH A 117 300 294 HOH HOH . C 3 HOH A 118 301 295 HOH HOH . C 3 HOH A 119 302 296 HOH HOH . C 3 HOH A 120 303 297 HOH HOH . C 3 HOH A 121 304 298 HOH HOH . C 3 HOH A 122 305 299 HOH HOH . C 3 HOH A 123 306 300 HOH HOH . C 3 HOH A 124 307 301 HOH HOH . C 3 HOH A 125 308 302 HOH HOH . C 3 HOH A 126 309 303 HOH HOH . C 3 HOH A 127 310 304 HOH HOH . C 3 HOH A 128 311 305 HOH HOH . C 3 HOH A 129 312 306 HOH HOH . C 3 HOH A 130 313 307 HOH HOH . C 3 HOH A 131 314 308 HOH HOH . C 3 HOH A 132 315 309 HOH HOH . C 3 HOH A 133 316 310 HOH HOH . C 3 HOH A 134 317 311 HOH HOH . C 3 HOH A 135 318 312 HOH HOH . C 3 HOH A 136 319 313 HOH HOH . C 3 HOH A 137 320 314 HOH HOH . C 3 HOH A 138 321 315 HOH HOH . C 3 HOH A 139 322 316 HOH HOH . C 3 HOH A 140 323 317 HOH HOH . C 3 HOH A 141 324 318 HOH HOH . C 3 HOH A 142 325 319 HOH HOH . C 3 HOH A 143 326 320 HOH HOH . C 3 HOH A 144 327 321 HOH HOH . C 3 HOH A 145 328 322 HOH HOH . C 3 HOH A 146 329 323 HOH HOH . C 3 HOH A 147 330 324 HOH HOH . C 3 HOH A 148 331 325 HOH HOH . C 3 HOH A 149 332 326 HOH HOH . C 3 HOH A 150 333 327 HOH HOH . C 3 HOH A 151 334 328 HOH HOH . C 3 HOH A 152 335 329 HOH HOH . C 3 HOH A 153 336 330 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RTL . . . B 2 29.611 21.373 45.313 1 29.7 ? C1 RTL 183 A 1 HETATM 2 C C2 RTL . . . B 2 29.353 21.382 43.799 1 28.11 ? C2 RTL 183 A 1 HETATM 3 C C3 RTL . . . B 2 30.405 20.84 42.987 1 26.46 ? C3 RTL 183 A 1 HETATM 4 C C4 RTL . . . B 2 30.678 19.375 43.278 1 26.08 ? C4 RTL 183 A 1 HETATM 5 C C5 RTL . . . B 2 30.87 19.136 44.759 1 28.86 ? C5 RTL 183 A 1 HETATM 6 C C6 RTL . . . B 2 30.391 20.023 45.717 1 30.29 ? C6 RTL 183 A 1 HETATM 7 C C7 RTL . . . B 2 30.414 19.748 47.187 1 29.88 ? C7 RTL 183 A 1 HETATM 8 C C8 RTL . . . B 2 31.534 19.557 47.92 1 32.14 ? C8 RTL 183 A 1 HETATM 9 C C9 RTL . . . B 2 31.615 19.289 49.328 1 32.15 ? C9 RTL 183 A 1 HETATM 10 C C10 RTL . . . B 2 32.869 19.106 49.829 1 33.84 ? C10 RTL 183 A 1 HETATM 11 C C11 RTL . . . B 2 33.241 18.889 51.213 1 33.39 ? C11 RTL 183 A 1 HETATM 12 C C12 RTL . . . B 2 34.527 18.665 51.595 1 30.46 ? C12 RTL 183 A 1 HETATM 13 C C13 RTL . . . B 2 34.959 18.49 52.975 1 32.39 ? C13 RTL 183 A 1 HETATM 14 C C14 RTL . . . B 2 36.268 18.238 53.23 1 32.99 ? C14 RTL 183 A 1 HETATM 15 C C15 RTL . . . B 2 36.758 18.042 54.587 1 33.56 ? C15 RTL 183 A 1 HETATM 16 O O1 RTL . . . B 2 38.122 17.788 54.897 1 34.65 ? O1 RTL 183 A 1 HETATM 17 C C16 RTL . . . B 2 28.241 21.481 46.026 1 30.78 ? C16 RTL 183 A 1 HETATM 18 C C17 RTL . . . B 2 30.456 22.597 45.686 1 31.83 ? C17 RTL 183 A 1 HETATM 19 C C18 RTL . . . B 2 31.737 17.897 45.005 1 23.36 ? C18 RTL 183 A 1 HETATM 20 C C19 RTL . . . B 2 30.295 19.156 50.116 1 33.51 ? C19 RTL 183 A 1 HETATM 21 C C20 RTL . . . B 2 33.889 18.609 54.109 1 29.77 ? C20 RTL 183 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #