data_1RC1 # _model_server_result.job_id emdCaTz19_PGYfpMRiNpqw _model_server_result.datetime_utc '2024-12-21 15:04:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":610}' # _entry.id 1RC1 # _exptl.entry_id 1RC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 803.694 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RC1 _cell.length_a 126.664 _cell.length_b 126.664 _cell.length_c 93.68 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RC1 _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C32 H40 F3 N7 O14' _chem_comp.formula_weight 803.694 _chem_comp.id KT3 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2A CD1 KT3 sing 173 n n N2A CA2 KT3 sing 174 n n N2A H2 KT3 sing 175 n n CD1 OEB KT3 doub 176 n n CD1 CG1 KT3 sing 177 n n CG1 CB1 KT3 sing 178 n n CG1 HG11 KT3 sing 179 n n CG1 HG21 KT3 sing 180 n n CB1 CA1 KT3 sing 181 n n CB1 HB11 KT3 sing 182 n n CB1 HB21 KT3 sing 183 n n CA1 C1A KT3 sing 184 n n CA1 N1A KT3 sing 185 n n CA1 HA1A KT3 sing 186 n n C1A O11 KT3 sing 187 n n C1A O1A KT3 doub 188 n n O11 HXT1 KT3 sing 189 n n N1A C KT3 sing 190 n n N1A H1 KT3 sing 191 n n C O KT3 doub 192 n n C C14 KT3 sing 193 n n C14 C15 KT3 doub 194 n y C14 C13 KT3 sing 195 n y C15 C16 KT3 sing 196 n y C15 H15 KT3 sing 197 n n C16 C11 KT3 doub 198 n y C16 H16 KT3 sing 199 n n C13 C12 KT3 doub 200 n y C13 H13 KT3 sing 201 n n C12 C11 KT3 sing 202 n y C12 H12 KT3 sing 203 n n C11 C10 KT3 sing 204 n n C10 C5 KT3 sing 205 n n C10 C1 KT3 sing 206 n n C10 H10 KT3 sing 207 n n C5 C6 KT3 sing 208 n n C5 OA2 KT3 sing 209 n n C5 OA1 KT3 sing 210 n n C6 F2 KT3 sing 211 n n C6 F1 KT3 sing 212 n n C6 F3 KT3 sing 213 n n OA2 HA2 KT3 sing 214 n n OA1 HA1 KT3 sing 215 n n C1 C2 KT3 sing 216 n n C1 H11 KT3 sing 217 n n C1 H12A KT3 sing 218 n n C2 C3 KT3 sing 219 n n C2 H21 KT3 sing 220 n n C2 H22 KT3 sing 221 n n C3 C4 KT3 sing 222 n n C3 H31 KT3 sing 223 n n C3 H32 KT3 sing 224 n n C4 C7 KT3 doub 225 n y C4 C9 KT3 sing 226 n y C7 N8 KT3 sing 227 n n C7 N1 KT3 sing 228 n y N8 HN81 KT3 sing 229 n n N8 HN82 KT3 sing 230 n n C9 O1 KT3 sing 231 n n C9 N3 KT3 doub 232 n y O1 HO1 KT3 sing 233 n n N3 C8 KT3 sing 234 n y C8 N2 KT3 sing 235 n n C8 N1 KT3 doub 236 n y N2 HN21 KT3 sing 237 n n N2 HN22 KT3 sing 238 n n OEN CD3 KT3 sing 239 n n OEN HE23 KT3 sing 240 n n OED CD3 KT3 doub 241 n n CD3 CG3 KT3 sing 242 n n CG3 CB3 KT3 sing 243 n n CG3 HG13 KT3 sing 244 n n CG3 HG23 KT3 sing 245 n n CB3 CA3 KT3 sing 246 n n CB3 HB13 KT3 sing 247 n n CB3 HB23 KT3 sing 248 n n CA3 C3A KT3 sing 249 n n CA3 N3A KT3 sing 250 n n CA3 HA3 KT3 sing 251 n n C3A O3 KT3 doub 252 n n C3A O12 KT3 sing 253 n n O12 HXT3 KT3 sing 254 n n N3A CD2 KT3 sing 255 n n N3A H3 KT3 sing 256 n n OEC CD2 KT3 doub 257 n n CD2 CG2 KT3 sing 258 n n CG2 CB2 KT3 sing 259 n n CG2 HG12 KT3 sing 260 n n CG2 HG22 KT3 sing 261 n n CB2 CA2 KT3 sing 262 n n CB2 HB12 KT3 sing 263 n n CB2 HB22 KT3 sing 264 n n CA2 C2A KT3 sing 265 n n CA2 HA2A KT3 sing 266 n n C2A O2 KT3 doub 267 n n C2A O13 KT3 sing 268 n n O13 HXT2 KT3 sing 269 n n # _atom_sites.entry_id 1RC1 _atom_sites.fract_transf_matrix[1][1] 0.007895 _atom_sites.fract_transf_matrix[1][2] 0.004558 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 521 521 PO4 PO4 . D 3 KT3 A 1 510 510 KT3 KT3 . E 2 PO4 B 1 621 621 PO4 PO4 . F 3 KT3 B 1 610 610 KT3 KT3 . G 4 HOH A 1 522 1 HOH HOH . G 4 HOH A 2 523 2 HOH HOH . G 4 HOH A 3 524 3 HOH HOH . G 4 HOH A 4 525 4 HOH HOH . G 4 HOH A 5 526 6 HOH HOH . G 4 HOH A 6 527 7 HOH HOH . G 4 HOH A 7 528 10 HOH HOH . G 4 HOH A 8 529 11 HOH HOH . G 4 HOH A 9 530 12 HOH HOH . G 4 HOH A 10 531 13 HOH HOH . G 4 HOH A 11 532 14 HOH HOH . G 4 HOH A 12 533 16 HOH HOH . G 4 HOH A 13 534 18 HOH HOH . G 4 HOH A 14 535 19 HOH HOH . G 4 HOH A 15 536 21 HOH HOH . G 4 HOH A 16 537 24 HOH HOH . G 4 HOH A 17 538 25 HOH HOH . G 4 HOH A 18 539 26 HOH HOH . G 4 HOH A 19 540 30 HOH HOH . G 4 HOH A 20 541 31 HOH HOH . G 4 HOH A 21 542 32 HOH HOH . G 4 HOH A 22 543 33 HOH HOH . G 4 HOH A 23 544 34 HOH HOH . G 4 HOH A 24 545 35 HOH HOH . G 4 HOH A 25 546 37 HOH HOH . G 4 HOH A 26 547 38 HOH HOH . G 4 HOH A 27 548 39 HOH HOH . G 4 HOH A 28 549 43 HOH HOH . G 4 HOH A 29 550 45 HOH HOH . G 4 HOH A 30 551 46 HOH HOH . G 4 HOH A 31 552 47 HOH HOH . G 4 HOH A 32 553 48 HOH HOH . G 4 HOH A 33 554 49 HOH HOH . G 4 HOH A 34 555 50 HOH HOH . G 4 HOH A 35 556 52 HOH HOH . G 4 HOH A 36 557 54 HOH HOH . G 4 HOH A 37 558 57 HOH HOH . G 4 HOH A 38 559 58 HOH HOH . G 4 HOH A 39 560 60 HOH HOH . G 4 HOH A 40 561 61 HOH HOH . G 4 HOH A 41 562 63 HOH HOH . G 4 HOH A 42 563 64 HOH HOH . G 4 HOH A 43 564 66 HOH HOH . G 4 HOH A 44 565 67 HOH HOH . G 4 HOH A 45 566 68 HOH HOH . G 4 HOH A 46 567 70 HOH HOH . G 4 HOH A 47 568 72 HOH HOH . G 4 HOH A 48 569 73 HOH HOH . G 4 HOH A 49 570 77 HOH HOH . G 4 HOH A 50 571 78 HOH HOH . G 4 HOH A 51 572 79 HOH HOH . G 4 HOH A 52 573 80 HOH HOH . G 4 HOH A 53 574 81 HOH HOH . G 4 HOH A 54 575 82 HOH HOH . G 4 HOH A 55 576 87 HOH HOH . G 4 HOH A 56 577 89 HOH HOH . G 4 HOH A 57 578 91 HOH HOH . G 4 HOH A 58 579 94 HOH HOH . G 4 HOH A 59 580 95 HOH HOH . G 4 HOH A 60 581 99 HOH HOH . G 4 HOH A 61 582 100 HOH HOH . G 4 HOH A 62 583 101 HOH HOH . G 4 HOH A 63 584 104 HOH HOH . G 4 HOH A 64 585 105 HOH HOH . G 4 HOH A 65 586 109 HOH HOH . G 4 HOH A 66 587 111 HOH HOH . G 4 HOH A 67 588 112 HOH HOH . G 4 HOH A 68 589 114 HOH HOH . G 4 HOH A 69 590 115 HOH HOH . G 4 HOH A 70 591 116 HOH HOH . G 4 HOH A 71 592 117 HOH HOH . G 4 HOH A 72 593 118 HOH HOH . G 4 HOH A 73 594 119 HOH HOH . G 4 HOH A 74 595 121 HOH HOH . G 4 HOH A 75 596 124 HOH HOH . G 4 HOH A 76 597 126 HOH HOH . G 4 HOH A 77 598 127 HOH HOH . G 4 HOH A 78 599 128 HOH HOH . G 4 HOH A 79 600 129 HOH HOH . G 4 HOH A 80 601 130 HOH HOH . H 4 HOH B 1 622 5 HOH HOH . H 4 HOH B 2 623 8 HOH HOH . H 4 HOH B 3 624 9 HOH HOH . H 4 HOH B 4 625 15 HOH HOH . H 4 HOH B 5 626 17 HOH HOH . H 4 HOH B 6 627 20 HOH HOH . H 4 HOH B 7 628 22 HOH HOH . H 4 HOH B 8 629 23 HOH HOH . H 4 HOH B 9 630 27 HOH HOH . H 4 HOH B 10 631 28 HOH HOH . H 4 HOH B 11 632 29 HOH HOH . H 4 HOH B 12 633 36 HOH HOH . H 4 HOH B 13 634 40 HOH HOH . H 4 HOH B 14 635 41 HOH HOH . H 4 HOH B 15 636 42 HOH HOH . H 4 HOH B 16 637 44 HOH HOH . H 4 HOH B 17 638 51 HOH HOH . H 4 HOH B 18 639 53 HOH HOH . H 4 HOH B 19 640 55 HOH HOH . H 4 HOH B 20 641 56 HOH HOH . H 4 HOH B 21 642 59 HOH HOH . H 4 HOH B 22 643 62 HOH HOH . H 4 HOH B 23 644 65 HOH HOH . H 4 HOH B 24 645 69 HOH HOH . H 4 HOH B 25 646 71 HOH HOH . H 4 HOH B 26 647 74 HOH HOH . H 4 HOH B 27 648 75 HOH HOH . H 4 HOH B 28 649 76 HOH HOH . H 4 HOH B 29 650 83 HOH HOH . H 4 HOH B 30 651 84 HOH HOH . H 4 HOH B 31 652 85 HOH HOH . H 4 HOH B 32 653 86 HOH HOH . H 4 HOH B 33 654 88 HOH HOH . H 4 HOH B 34 655 90 HOH HOH . H 4 HOH B 35 656 92 HOH HOH . H 4 HOH B 36 657 93 HOH HOH . H 4 HOH B 37 658 96 HOH HOH . H 4 HOH B 38 659 97 HOH HOH . H 4 HOH B 39 660 98 HOH HOH . H 4 HOH B 40 661 102 HOH HOH . H 4 HOH B 41 662 103 HOH HOH . H 4 HOH B 42 663 106 HOH HOH . H 4 HOH B 43 664 107 HOH HOH . H 4 HOH B 44 665 108 HOH HOH . H 4 HOH B 45 666 110 HOH HOH . H 4 HOH B 46 667 113 HOH HOH . H 4 HOH B 47 668 120 HOH HOH . H 4 HOH B 48 669 122 HOH HOH . H 4 HOH B 49 670 123 HOH HOH . H 4 HOH B 50 671 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2A KT3 . . . F 3 -19.041 73.91 37.58 1 46.52 ? N2A KT3 610 B 1 HETATM 2 C CD1 KT3 . . . F 3 -19.176 72.787 38.263 1 46.06 ? CD1 KT3 610 B 1 HETATM 3 O OEB KT3 . . . F 3 -19.781 71.779 37.874 1 47.23 ? OEB KT3 610 B 1 HETATM 4 C CG1 KT3 . . . F 3 -18.481 72.891 39.572 1 44.7 ? CG1 KT3 610 B 1 HETATM 5 C CB1 KT3 . . . F 3 -19.117 72.118 40.734 1 41.33 ? CB1 KT3 610 B 1 HETATM 6 C CA1 KT3 . . . F 3 -18.434 72.239 42.059 1 39.8 ? CA1 KT3 610 B 1 HETATM 7 C C1A KT3 . . . F 3 -19.351 71.932 43.321 1 39.58 ? C1A KT3 610 B 1 HETATM 8 O O11 KT3 . . . F 3 -19.973 72.846 43.859 1 40.37 ? O11 KT3 610 B 1 HETATM 9 O O1A KT3 . . . F 3 -19.448 70.65 43.803 1 38.15 ? O1A KT3 610 B 1 HETATM 10 N N1A KT3 . . . F 3 -17.32 71.217 42.008 1 39.75 ? N1A KT3 610 B 1 HETATM 11 C C KT3 . . . F 3 -15.955 71.465 41.941 1 39.39 ? C KT3 610 B 1 HETATM 12 O O KT3 . . . F 3 -15.465 72.577 41.973 1 39.52 ? O KT3 610 B 1 HETATM 13 C C14 KT3 . . . F 3 -15.141 70.281 41.758 1 39.39 ? C14 KT3 610 B 1 HETATM 14 C C15 KT3 . . . F 3 -15.757 69.053 41.171 1 39.07 ? C15 KT3 610 B 1 HETATM 15 C C16 KT3 . . . F 3 -15 67.874 41.119 1 37.84 ? C16 KT3 610 B 1 HETATM 16 C C13 KT3 . . . F 3 -13.722 70.269 42.264 1 38.89 ? C13 KT3 610 B 1 HETATM 17 C C12 KT3 . . . F 3 -12.934 69.052 42.201 1 37.81 ? C12 KT3 610 B 1 HETATM 18 C C11 KT3 . . . F 3 -13.616 67.805 41.598 1 37.07 ? C11 KT3 610 B 1 HETATM 19 C C10 KT3 . . . F 3 -13.049 66.331 41.184 1 36.42 ? C10 KT3 610 B 1 HETATM 20 C C5 KT3 . . . F 3 -11.745 65.968 40.331 1 36.22 ? C5 KT3 610 B 1 HETATM 21 C C6 KT3 . . . F 3 -12.214 65.996 38.865 1 35.42 ? C6 KT3 610 B 1 HETATM 22 F F2 KT3 . . . F 3 -12.872 67.137 38.436 1 33.55 ? F2 KT3 610 B 1 HETATM 23 F F1 KT3 . . . F 3 -13.192 65.092 38.966 1 34.73 ? F1 KT3 610 B 1 HETATM 24 F F3 KT3 . . . F 3 -11.232 65.633 38.027 1 36.47 ? F3 KT3 610 B 1 HETATM 25 O OA2 KT3 . . . F 3 -10.91 65.213 40.666 1 36.27 ? OA2 KT3 610 B 1 HETATM 26 O OA1 KT3 . . . F 3 -10.927 67.331 40.334 1 35.62 ? OA1 KT3 610 B 1 HETATM 27 C C1 KT3 . . . F 3 -13.534 65.147 42.063 1 35.74 ? C1 KT3 610 B 1 HETATM 28 C C2 KT3 . . . F 3 -13.06 65.298 43.662 1 33.78 ? C2 KT3 610 B 1 HETATM 29 C C3 KT3 . . . F 3 -13.285 63.905 44.349 1 31.79 ? C3 KT3 610 B 1 HETATM 30 C C4 KT3 . . . F 3 -14.061 64.306 45.561 1 30.05 ? C4 KT3 610 B 1 HETATM 31 C C7 KT3 . . . F 3 -15.451 64.526 46.001 1 29.14 ? C7 KT3 610 B 1 HETATM 32 N N8 KT3 . . . F 3 -16.524 64.287 45.18 1 30.89 ? N8 KT3 610 B 1 HETATM 33 C C9 KT3 . . . F 3 -13.179 64.604 46.541 1 29.28 ? C9 KT3 610 B 1 HETATM 34 O O1 KT3 . . . F 3 -11.795 64.421 46.693 1 27.94 ? O1 KT3 610 B 1 HETATM 35 N N3 KT3 . . . F 3 -13.564 65.175 48.001 1 28.63 ? N3 KT3 610 B 1 HETATM 36 C C8 KT3 . . . F 3 -14.895 65.335 48.238 1 28.36 ? C8 KT3 610 B 1 HETATM 37 N N2 KT3 . . . F 3 -15.348 65.909 49.358 1 27.07 ? N2 KT3 610 B 1 HETATM 38 N N1 KT3 . . . F 3 -15.765 65.034 47.318 1 28.9 ? N1 KT3 610 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 38 #