data_1RC4 # _model_server_result.job_id 8MpuO14w0I-C1sZgMAP0SQ _model_server_result.datetime_utc '2024-11-23 13:40:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":161}' # _entry.id 1RC4 # _exptl.entry_id 1RC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5,10-DIDEAZATETRAHYDROFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RC4 _cell.length_a 34.843 _cell.length_b 59.059 _cell.length_c 81.007 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H25 N5 O6' _chem_comp.formula_weight 443.453 _chem_comp.id DDF _chem_comp.mon_nstd_flag . _chem_comp.name '5,10-DIDEAZATETRAHYDROFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DDF sing 83 n y N1 C8A DDF sing 84 n y N1 HN1 DDF sing 85 n n C2 NA2 DDF sing 86 n n C2 N3 DDF doub 87 n y NA2 HN21 DDF sing 88 n n NA2 HN22 DDF sing 89 n n N3 C4 DDF sing 90 n y C4 O4 DDF doub 91 n n C4 C4A DDF sing 92 n y C4A C5 DDF sing 93 n n C4A C8A DDF doub 94 n y C5 C6 DDF sing 95 n n C5 H51 DDF sing 96 n n C5 H52 DDF sing 97 n n C6 C7 DDF sing 98 n n C6 C9 DDF sing 99 n n C6 H6 DDF sing 100 n n C7 N8 DDF sing 101 n n C7 H71 DDF sing 102 n n C7 H72 DDF sing 103 n n N8 C8A DDF sing 104 n n N8 HN8 DDF sing 105 n n C9 C10 DDF sing 106 n n C9 H91 DDF sing 107 n n C9 H92 DDF sing 108 n n C10 C14 DDF sing 109 n n C10 H101 DDF sing 110 n n C10 H102 DDF sing 111 n n C11 C12 DDF doub 112 n y C11 C16 DDF sing 113 n y C11 C DDF sing 114 n n C12 C13 DDF sing 115 n y C12 H12 DDF sing 116 n n C13 C14 DDF doub 117 n y C13 H13 DDF sing 118 n n C14 C15 DDF sing 119 n y C15 C16 DDF doub 120 n y C15 H15 DDF sing 121 n n C16 H16 DDF sing 122 n n C O DDF doub 123 n n C N DDF sing 124 n n N CA DDF sing 125 n n N HN DDF sing 126 n n CA CB DDF sing 127 n n CA CT DDF sing 128 n n CA HA DDF sing 129 n n CB CG DDF sing 130 n n CB HB1 DDF sing 131 n n CB HB2 DDF sing 132 n n CG CD DDF sing 133 n n CG HG1 DDF sing 134 n n CG HG2 DDF sing 135 n n CD OE1 DDF doub 136 n n CD OE2 DDF sing 137 n n OE2 HOE2 DDF sing 138 n n CT O1 DDF doub 139 n n CT O2 DDF sing 140 n n O2 HO2 DDF sing 141 n n # _atom_sites.entry_id 1RC4 _atom_sites.fract_transf_matrix[1][1] 0.0287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DDF A 1 161 161 DDF DDF . C 3 NAP A 1 164 164 NAP NAP . D 4 HOH A 1 200 200 HOH HOH . D 4 HOH A 2 203 203 HOH HOH . D 4 HOH A 3 205 205 HOH HOH . D 4 HOH A 4 206 206 HOH HOH . D 4 HOH A 5 207 207 HOH HOH . D 4 HOH A 6 208 208 HOH HOH . D 4 HOH A 7 209 209 HOH HOH . D 4 HOH A 8 210 210 HOH HOH . D 4 HOH A 9 211 211 HOH HOH . D 4 HOH A 10 212 212 HOH HOH . D 4 HOH A 11 213 213 HOH HOH . D 4 HOH A 12 216 216 HOH HOH . D 4 HOH A 13 217 217 HOH HOH . D 4 HOH A 14 218 218 HOH HOH . D 4 HOH A 15 220 220 HOH HOH . D 4 HOH A 16 221 221 HOH HOH . D 4 HOH A 17 222 222 HOH HOH . D 4 HOH A 18 223 223 HOH HOH . D 4 HOH A 19 224 224 HOH HOH . D 4 HOH A 20 226 226 HOH HOH . D 4 HOH A 21 227 227 HOH HOH . D 4 HOH A 22 228 228 HOH HOH . D 4 HOH A 23 229 229 HOH HOH . D 4 HOH A 24 230 230 HOH HOH . D 4 HOH A 25 231 231 HOH HOH . D 4 HOH A 26 232 232 HOH HOH . D 4 HOH A 27 233 233 HOH HOH . D 4 HOH A 28 234 234 HOH HOH . D 4 HOH A 29 235 235 HOH HOH . D 4 HOH A 30 236 236 HOH HOH . D 4 HOH A 31 237 237 HOH HOH . D 4 HOH A 32 238 238 HOH HOH . D 4 HOH A 33 239 239 HOH HOH . D 4 HOH A 34 240 240 HOH HOH . D 4 HOH A 35 242 242 HOH HOH . D 4 HOH A 36 243 243 HOH HOH . D 4 HOH A 37 244 244 HOH HOH . D 4 HOH A 38 247 247 HOH HOH . D 4 HOH A 39 248 248 HOH HOH . D 4 HOH A 40 249 249 HOH HOH . D 4 HOH A 41 250 250 HOH HOH . D 4 HOH A 42 251 251 HOH HOH . D 4 HOH A 43 252 252 HOH HOH . D 4 HOH A 44 254 254 HOH HOH . D 4 HOH A 45 255 255 HOH HOH . D 4 HOH A 46 256 256 HOH HOH . D 4 HOH A 47 258 258 HOH HOH . D 4 HOH A 48 259 259 HOH HOH . D 4 HOH A 49 260 260 HOH HOH . D 4 HOH A 50 261 261 HOH HOH . D 4 HOH A 51 262 262 HOH HOH . D 4 HOH A 52 263 263 HOH HOH . D 4 HOH A 53 264 264 HOH HOH . D 4 HOH A 54 265 265 HOH HOH . D 4 HOH A 55 266 266 HOH HOH . D 4 HOH A 56 268 268 HOH HOH . D 4 HOH A 57 269 269 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DDF . . . B 2 19.806 30.572 29.118 1 25.23 ? N1 DDF 161 A 1 HETATM 2 C C2 DDF . . . B 2 20.557 31.646 29.382 1 25.37 ? C2 DDF 161 A 1 HETATM 3 N NA2 DDF . . . B 2 20.11 32.854 29.386 1 22.59 ? NA2 DDF 161 A 1 HETATM 4 N N3 DDF . . . B 2 21.935 31.484 29.669 1 18.27 ? N3 DDF 161 A 1 HETATM 5 C C4 DDF . . . B 2 22.562 30.302 29.714 1 25.2 ? C4 DDF 161 A 1 HETATM 6 O O4 DDF . . . B 2 23.765 30.214 29.972 1 27.49 ? O4 DDF 161 A 1 HETATM 7 C C4A DDF . . . B 2 21.703 29.153 29.428 1 29.9 ? C4A DDF 161 A 1 HETATM 8 C C5 DDF . . . B 2 22.28 27.862 29.577 1 30.36 ? C5 DDF 161 A 1 HETATM 9 C C6 DDF . . . B 2 21.248 26.851 29.616 1 32.75 ? C6 DDF 161 A 1 HETATM 10 C C7 DDF . . . B 2 20.053 27.115 28.876 1 28.94 ? C7 DDF 161 A 1 HETATM 11 N N8 DDF . . . B 2 19.499 28.33 29.068 1 22.64 ? N8 DDF 161 A 1 HETATM 12 C C8A DDF . . . B 2 20.392 29.332 29.142 1 12.12 ? C8A DDF 161 A 1 HETATM 13 C C9 DDF . . . B 2 21.104 26.263 30.958 1 33.43 ? C9 DDF 161 A 1 HETATM 14 C C10 DDF . . . B 2 22.503 26.122 31.581 1 43.92 ? C10 DDF 161 A 1 HETATM 15 C C11 DDF . . . B 2 22.852 27.685 35.516 1 22.64 ? C11 DDF 161 A 1 HETATM 16 C C12 DDF . . . B 2 23.97 27.245 34.823 1 31.81 ? C12 DDF 161 A 1 HETATM 17 C C13 DDF . . . B 2 23.841 26.747 33.574 1 23.02 ? C13 DDF 161 A 1 HETATM 18 C C14 DDF . . . B 2 22.558 26.696 32.983 1 21.72 ? C14 DDF 161 A 1 HETATM 19 C C15 DDF . . . B 2 21.47 27.097 33.637 1 36.79 ? C15 DDF 161 A 1 HETATM 20 C C16 DDF . . . B 2 21.642 27.601 34.923 1 34.65 ? C16 DDF 161 A 1 HETATM 21 C C DDF . . . B 2 22.896 28.201 36.825 1 32.13 ? C DDF 161 A 1 HETATM 22 O O DDF . . . B 2 23.797 27.953 37.602 1 32.9 ? O DDF 161 A 1 HETATM 23 N N DDF . . . B 2 21.923 28.912 37.251 1 26.76 ? N DDF 161 A 1 HETATM 24 C CA DDF . . . B 2 22.023 29.468 38.611 1 21.31 ? CA DDF 161 A 1 HETATM 25 C CB DDF . . . B 2 22.823 30.752 38.413 1 37.25 ? CB DDF 161 A 1 HETATM 26 C CG DDF . . . B 2 23.97 31.028 39.505 1 41.14 ? CG DDF 161 A 1 HETATM 27 C CD DDF . . . B 2 24.324 32.521 39.302 1 85.87 ? CD DDF 161 A 1 HETATM 28 O OE1 DDF . . . B 2 25.225 32.639 38.417 1 100 ? OE1 DDF 161 A 1 HETATM 29 O OE2 DDF . . . B 2 23.64 33.456 39.788 1 67.73 ? OE2 DDF 161 A 1 HETATM 30 C CT DDF . . . B 2 20.632 29.762 39.063 1 22.14 ? CT DDF 161 A 1 HETATM 31 O O1 DDF . . . B 2 19.806 30.041 38.201 1 28.62 ? O1 DDF 161 A 1 HETATM 32 O O2 DDF . . . B 2 20.372 29.674 40.295 1 25.3 ? O2 DDF 161 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #