data_1RC4 # _model_server_result.job_id VhVxh5JwiaYQk9-mQujkyw _model_server_result.datetime_utc '2024-11-23 13:28:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":164}' # _entry.id 1RC4 # _exptl.entry_id 1RC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RC4 _cell.length_a 34.843 _cell.length_b 59.059 _cell.length_c 81.007 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 296 n n PA O2A NAP sing 297 n n PA O5B NAP sing 298 n n PA O3 NAP sing 299 n n O2A HOA2 NAP sing 300 n n O5B C5B NAP sing 301 n n C5B C4B NAP sing 302 n n C5B H51A NAP sing 303 n n C5B H52A NAP sing 304 n n C4B O4B NAP sing 305 n n C4B C3B NAP sing 306 n n C4B H4B NAP sing 307 n n O4B C1B NAP sing 308 n n C3B O3B NAP sing 309 n n C3B C2B NAP sing 310 n n C3B H3B NAP sing 311 n n O3B HO3A NAP sing 312 n n C2B O2B NAP sing 313 n n C2B C1B NAP sing 314 n n C2B H2B NAP sing 315 n n O2B P2B NAP sing 316 n n C1B N9A NAP sing 317 n n C1B H1B NAP sing 318 n n N9A C8A NAP sing 319 n y N9A C4A NAP sing 320 n y C8A N7A NAP doub 321 n y C8A H8A NAP sing 322 n n N7A C5A NAP sing 323 n y C5A C6A NAP sing 324 n y C5A C4A NAP doub 325 n y C6A N6A NAP sing 326 n n C6A N1A NAP doub 327 n y N6A H61A NAP sing 328 n n N6A H62A NAP sing 329 n n N1A C2A NAP sing 330 n y C2A N3A NAP doub 331 n y C2A H2A NAP sing 332 n n N3A C4A NAP sing 333 n y O3 PN NAP sing 334 n n PN O1N NAP doub 335 n n PN O2N NAP sing 336 n n PN O5D NAP sing 337 n n O5D C5D NAP sing 338 n n C5D C4D NAP sing 339 n n C5D H51N NAP sing 340 n n C5D H52N NAP sing 341 n n C4D O4D NAP sing 342 n n C4D C3D NAP sing 343 n n C4D H4D NAP sing 344 n n O4D C1D NAP sing 345 n n C3D O3D NAP sing 346 n n C3D C2D NAP sing 347 n n C3D H3D NAP sing 348 n n O3D HO3N NAP sing 349 n n C2D O2D NAP sing 350 n n C2D C1D NAP sing 351 n n C2D H2D NAP sing 352 n n O2D HO2N NAP sing 353 n n C1D N1N NAP sing 354 n n C1D H1D NAP sing 355 n n N1N C2N NAP sing 356 n y N1N C6N NAP doub 357 n y C2N C3N NAP doub 358 n y C2N H2N NAP sing 359 n n C3N C7N NAP sing 360 n n C3N C4N NAP sing 361 n y C7N O7N NAP doub 362 n n C7N N7N NAP sing 363 n n N7N H71N NAP sing 364 n n N7N H72N NAP sing 365 n n C4N C5N NAP doub 366 n y C4N H4N NAP sing 367 n n C5N C6N NAP sing 368 n y C5N H5N NAP sing 369 n n C6N H6N NAP sing 370 n n P2B O1X NAP doub 371 n n P2B O2X NAP sing 372 n n P2B O3X NAP sing 373 n n O2X HOP2 NAP sing 374 n n O3X HOP3 NAP sing 375 n n # _atom_sites.entry_id 1RC4 _atom_sites.fract_transf_matrix[1][1] 0.0287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DDF A 1 161 161 DDF DDF . C 3 NAP A 1 164 164 NAP NAP . D 4 HOH A 1 200 200 HOH HOH . D 4 HOH A 2 203 203 HOH HOH . D 4 HOH A 3 205 205 HOH HOH . D 4 HOH A 4 206 206 HOH HOH . D 4 HOH A 5 207 207 HOH HOH . D 4 HOH A 6 208 208 HOH HOH . D 4 HOH A 7 209 209 HOH HOH . D 4 HOH A 8 210 210 HOH HOH . D 4 HOH A 9 211 211 HOH HOH . D 4 HOH A 10 212 212 HOH HOH . D 4 HOH A 11 213 213 HOH HOH . D 4 HOH A 12 216 216 HOH HOH . D 4 HOH A 13 217 217 HOH HOH . D 4 HOH A 14 218 218 HOH HOH . D 4 HOH A 15 220 220 HOH HOH . D 4 HOH A 16 221 221 HOH HOH . D 4 HOH A 17 222 222 HOH HOH . D 4 HOH A 18 223 223 HOH HOH . D 4 HOH A 19 224 224 HOH HOH . D 4 HOH A 20 226 226 HOH HOH . D 4 HOH A 21 227 227 HOH HOH . D 4 HOH A 22 228 228 HOH HOH . D 4 HOH A 23 229 229 HOH HOH . D 4 HOH A 24 230 230 HOH HOH . D 4 HOH A 25 231 231 HOH HOH . D 4 HOH A 26 232 232 HOH HOH . D 4 HOH A 27 233 233 HOH HOH . D 4 HOH A 28 234 234 HOH HOH . D 4 HOH A 29 235 235 HOH HOH . D 4 HOH A 30 236 236 HOH HOH . D 4 HOH A 31 237 237 HOH HOH . D 4 HOH A 32 238 238 HOH HOH . D 4 HOH A 33 239 239 HOH HOH . D 4 HOH A 34 240 240 HOH HOH . D 4 HOH A 35 242 242 HOH HOH . D 4 HOH A 36 243 243 HOH HOH . D 4 HOH A 37 244 244 HOH HOH . D 4 HOH A 38 247 247 HOH HOH . D 4 HOH A 39 248 248 HOH HOH . D 4 HOH A 40 249 249 HOH HOH . D 4 HOH A 41 250 250 HOH HOH . D 4 HOH A 42 251 251 HOH HOH . D 4 HOH A 43 252 252 HOH HOH . D 4 HOH A 44 254 254 HOH HOH . D 4 HOH A 45 255 255 HOH HOH . D 4 HOH A 46 256 256 HOH HOH . D 4 HOH A 47 258 258 HOH HOH . D 4 HOH A 48 259 259 HOH HOH . D 4 HOH A 49 260 260 HOH HOH . D 4 HOH A 50 261 261 HOH HOH . D 4 HOH A 51 262 262 HOH HOH . D 4 HOH A 52 263 263 HOH HOH . D 4 HOH A 53 264 264 HOH HOH . D 4 HOH A 54 265 265 HOH HOH . D 4 HOH A 55 266 266 HOH HOH . D 4 HOH A 56 268 268 HOH HOH . D 4 HOH A 57 269 269 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 19.047 17.763 25.969 1 17.79 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . C 3 17.925 18.247 25.144 1 13.06 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . C 3 19.621 18.595 27.064 1 14.68 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . C 3 18.894 16.282 26.517 1 20.53 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . C 3 18.25 15.296 25.71 1 15.81 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . C 3 17.87 14.048 26.473 1 16.6 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . C 3 16.518 14.347 26.881 1 16.46 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . C 3 17.576 12.819 25.619 1 22.57 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . C 3 18.71 12.013 25.501 1 21.1 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . C 3 16.478 12.035 26.349 1 12.83 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . C 3 17.094 11.53 27.509 1 13.33 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . C 3 15.721 13.194 26.975 1 12.02 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . C 3 14.615 13.591 26.144 1 14.36 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . C 3 14.468 14.635 25.284 1 12.51 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . C 3 13.269 14.616 24.741 1 17.25 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . C 3 12.641 13.496 25.289 1 7.71 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . C 3 11.345 12.907 25.146 1 17.26 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . C 3 10.345 13.371 24.347 1 14.32 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . C 3 11.105 11.777 25.88 1 13.5 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . C 3 12.067 11.293 26.687 1 16.16 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . C 3 13.284 11.754 26.87 1 19.16 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . C 3 13.483 12.862 26.149 1 14.94 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . C 3 20.251 17.427 25.027 1 19.38 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . C 3 20.791 18.294 23.77 1 30.79 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . C 3 20.887 19.76 24.044 1 30.91 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . C 3 20.03 17.807 22.592 1 14.75 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . C 3 22.263 17.766 23.979 1 33.61 ? O5D NAP 164 A 1 HETATM 28 C C5D NAP . . . C 3 22.665 17.007 22.778 1 36.75 ? C5D NAP 164 A 1 HETATM 29 C C4D NAP . . . C 3 23.698 16.313 23.738 1 45.53 ? C4D NAP 164 A 1 HETATM 30 O O4D NAP . . . C 3 24.388 15.637 22.636 1 60.27 ? O4D NAP 164 A 1 HETATM 31 C C3D NAP . . . C 3 25.025 17.033 24.149 1 57.06 ? C3D NAP 164 A 1 HETATM 32 O O3D NAP . . . C 3 25.95 16.138 24.629 1 61.61 ? O3D NAP 164 A 1 HETATM 33 C C2D NAP . . . C 3 25.446 17.649 22.776 1 58.04 ? C2D NAP 164 A 1 HETATM 34 O O2D NAP . . . C 3 26.748 18.067 22.741 1 75.57 ? O2D NAP 164 A 1 HETATM 35 C C1D NAP . . . C 3 25.311 16.513 21.905 1 44.03 ? C1D NAP 164 A 1 HETATM 36 N N1N NAP . . . C 3 24.91 16.893 20.47 1 42.35 ? N1N NAP 164 A 1 HETATM 37 C C2N NAP . . . C 3 25.879 17.206 19.517 1 35.55 ? C2N NAP 164 A 1 HETATM 38 C C3N NAP . . . C 3 25.459 17.653 18.344 1 31.26 ? C3N NAP 164 A 1 HETATM 39 C C4N NAP . . . C 3 23.975 17.97 17.956 1 41.49 ? C4N NAP 164 A 1 HETATM 40 C C5N NAP . . . C 3 23.077 17.43 19.077 1 49.16 ? C5N NAP 164 A 1 HETATM 41 C C6N NAP . . . C 3 23.633 16.724 19.99 1 49.95 ? C6N NAP 164 A 1 HETATM 42 P P2B NAP . . . C 3 17.388 9.957 27.6 1 19.45 ? P2B NAP 164 A 1 HETATM 43 O O1X NAP . . . C 3 17.843 9.766 29.083 1 15.87 ? O1X NAP 164 A 1 HETATM 44 O O2X NAP . . . C 3 16.196 9.105 27.204 1 18.47 ? O2X NAP 164 A 1 HETATM 45 O O3X NAP . . . C 3 18.578 9.913 26.692 1 18.49 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 45 #