data_1RDG # _model_server_result.job_id KRC1a34fHEkFDU1_LT0Rhg _model_server_result.datetime_utc '2024-11-12 20:34:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":53}' # _entry.id 1RDG # _exptl.entry_id 1RDG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.4 _cell.angle_gamma 90 _cell.entry_id 1RDG _cell.length_a 19.731 _cell.length_b 41.67 _cell.length_c 24.394 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C FOR . A FOR 0 1_555 A N MET 1 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? metalc ? metalc1 A SG CYS 6 A CYS 6 1_555 B FE FE . A FE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A SG CYS 9 A CYS 9 1_555 B FE FE . A FE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A SG CYS 39 A CYS 39 1_555 B FE FE . A FE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A SG CYS 42 A CYS 42 1_555 B FE FE . A FE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RDG _atom_sites.fract_transf_matrix[1][1] 0.050682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.017848 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.043461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 53 53 FE FE . C 3 FOR A 1 0 0 FOR FOR . D 4 HOH A 1 54 1 HOH HOH . D 4 HOH A 2 55 2 HOH HOH . D 4 HOH A 3 56 3 HOH HOH . D 4 HOH A 4 57 4 HOH HOH . D 4 HOH A 5 58 5 HOH HOH . D 4 HOH A 6 59 6 HOH HOH . D 4 HOH A 7 60 7 HOH HOH . D 4 HOH A 8 61 8 HOH HOH . D 4 HOH A 9 62 9 HOH HOH . D 4 HOH A 10 63 10 HOH HOH . D 4 HOH A 11 64 11 HOH HOH . D 4 HOH A 12 65 12 HOH HOH . D 4 HOH A 13 66 13 HOH HOH . D 4 HOH A 14 67 14 HOH HOH . D 4 HOH A 15 68 15 HOH HOH . D 4 HOH A 16 69 16 HOH HOH . D 4 HOH A 17 70 17 HOH HOH . D 4 HOH A 18 71 18 HOH HOH . D 4 HOH A 19 72 19 HOH HOH . D 4 HOH A 20 73 20 HOH HOH . D 4 HOH A 21 74 21 HOH HOH . D 4 HOH A 22 75 22 HOH HOH . D 4 HOH A 23 76 23 HOH HOH . D 4 HOH A 24 77 24 HOH HOH . D 4 HOH A 25 78 25 HOH HOH . D 4 HOH A 26 79 26 HOH HOH . D 4 HOH A 27 80 27 HOH HOH . D 4 HOH A 28 81 28 HOH HOH . D 4 HOH A 29 82 29 HOH HOH . D 4 HOH A 30 83 30 HOH HOH . D 4 HOH A 31 84 31 HOH HOH . D 4 HOH A 32 85 32 HOH HOH . D 4 HOH A 33 86 33 HOH HOH . D 4 HOH A 34 87 34 HOH HOH . D 4 HOH A 35 88 35 HOH HOH . D 4 HOH A 36 89 36 HOH HOH . D 4 HOH A 37 90 37 HOH HOH . D 4 HOH A 38 91 38 HOH HOH . D 4 HOH A 39 92 39 HOH HOH . D 4 HOH A 40 93 40 HOH HOH . D 4 HOH A 41 94 41 HOH HOH . D 4 HOH A 42 95 42 HOH HOH . D 4 HOH A 43 96 43 HOH HOH . D 4 HOH A 44 97 44 HOH HOH . D 4 HOH A 45 98 45 HOH HOH . D 4 HOH A 46 99 46 HOH HOH . D 4 HOH A 47 100 47 HOH HOH . D 4 HOH A 48 101 48 HOH HOH . D 4 HOH A 49 102 49 HOH HOH . D 4 HOH A 50 103 50 HOH HOH . D 4 HOH A 51 104 51 HOH HOH . D 4 HOH A 52 105 52 HOH HOH . D 4 HOH A 53 106 53 HOH HOH . D 4 HOH A 54 107 54 HOH HOH . D 4 HOH A 55 108 55 HOH HOH . D 4 HOH A 56 109 56 HOH HOH . D 4 HOH A 57 110 57 HOH HOH . D 4 HOH A 58 111 58 HOH HOH . D 4 HOH A 59 112 60 HOH HOH . D 4 HOH A 60 113 61 HOH HOH . D 4 HOH A 61 114 62 HOH HOH . D 4 HOH A 62 115 63 HOH HOH . D 4 HOH A 63 116 64 HOH HOH . D 4 HOH A 64 117 65 HOH HOH . D 4 HOH A 65 118 66 HOH HOH . D 4 HOH A 66 119 67 HOH HOH . D 4 HOH A 67 120 68 HOH HOH . D 4 HOH A 68 121 69 HOH HOH . D 4 HOH A 69 122 70 HOH HOH . D 4 HOH A 70 123 71 HOH HOH . D 4 HOH A 71 124 72 HOH HOH . D 4 HOH A 72 125 73 HOH HOH . D 4 HOH A 73 126 74 HOH HOH . D 4 HOH A 74 127 75 HOH HOH . D 4 HOH A 75 128 76 HOH HOH . D 4 HOH A 76 129 77 HOH HOH . D 4 HOH A 77 130 78 HOH HOH . D 4 HOH A 78 131 79 HOH HOH . D 4 HOH A 79 132 80 HOH HOH . D 4 HOH A 80 133 81 HOH HOH . D 4 HOH A 81 134 82 HOH HOH . D 4 HOH A 82 135 83 HOH HOH . D 4 HOH A 83 136 84 HOH HOH . D 4 HOH A 84 137 85 HOH HOH . D 4 HOH A 85 138 87 HOH HOH . D 4 HOH A 86 139 88 HOH HOH . D 4 HOH A 87 140 89 HOH HOH . D 4 HOH A 88 141 90 HOH HOH . D 4 HOH A 89 142 91 HOH HOH . D 4 HOH A 90 143 93 HOH HOH . D 4 HOH A 91 144 94 HOH HOH . D 4 HOH A 92 145 95 HOH HOH . D 4 HOH A 93 146 96 HOH HOH . D 4 HOH A 94 147 97 HOH HOH . D 4 HOH A 95 148 98 HOH HOH . D 4 HOH A 96 149 99 HOH HOH . D 4 HOH A 97 150 100 HOH HOH . D 4 HOH A 98 151 101 HOH HOH . D 4 HOH A 99 152 102 HOH HOH . D 4 HOH A 100 153 103 HOH HOH . D 4 HOH A 101 154 104 HOH HOH . D 4 HOH A 102 155 105 HOH HOH . D 4 HOH A 103 156 106 HOH HOH . D 4 HOH A 104 157 107 HOH HOH . D 4 HOH A 105 158 108 HOH HOH . D 4 HOH A 106 159 109 HOH HOH . D 4 HOH A 107 160 110 HOH HOH . D 4 HOH A 108 161 111 HOH HOH . D 4 HOH A 109 162 112 HOH HOH . D 4 HOH A 110 163 113 HOH HOH . D 4 HOH A 111 164 114 HOH HOH . D 4 HOH A 112 165 115 HOH HOH . D 4 HOH A 113 166 116 HOH HOH . D 4 HOH A 114 167 118 HOH HOH . D 4 HOH A 115 168 119 HOH HOH . D 4 HOH A 116 169 120 HOH HOH . D 4 HOH A 117 170 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.525 _atom_site.Cartn_y -0.22 _atom_site.Cartn_z 9.138 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 6.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 53 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #