data_1RDX
#
_model_server_result.job_id            aqprLJPR1bX9u6liqJ1pvA 
_model_server_result.datetime_utc      '2024-10-20 19:32:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rdx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":338}' 
#
_entry.id    1RDX 
#
_exptl.entry_id    1RDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            6-O-phosphono-beta-D-fructofuranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1RDX 
_cell.length_a            131.31 
_cell.length_b            131.31 
_cell.length_c            66.4 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                F6P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              6-O-phosphono-beta-D-fructofuranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 F6P sing 83 n n 
O1 HO1 F6P sing 84 n n 
C1 C2 F6P sing 85 n n 
C1 H11 F6P sing 86 n n 
C1 H12 F6P sing 87 n n 
C2 O2 F6P sing 88 n n 
C2 C3 F6P sing 89 n n 
C2 O5 F6P sing 90 n n 
O2 HO2 F6P sing 91 n n 
C3 O3 F6P sing 92 n n 
C3 C4 F6P sing 93 n n 
C3 H3 F6P sing 94 n n 
O3 HO3 F6P sing 95 n n 
C4 O4 F6P sing 96 n n 
C4 C5 F6P sing 97 n n 
C4 H4 F6P sing 98 n n 
O4 HO4 F6P sing 99 n n 
C5 O5 F6P sing 100 n n 
C5 C6 F6P sing 101 n n 
C5 H5 F6P sing 102 n n 
C6 O6 F6P sing 103 n n 
C6 H61 F6P sing 104 n n 
C6 H62 F6P sing 105 n n 
O6 P F6P sing 106 n n 
P O1P F6P doub 107 n n 
P O2P F6P sing 108 n n 
P O3P F6P sing 109 n n 
O2P HOP2 F6P sing 110 n n 
O3P HOP3 F6P sing 111 n n 
#
_pdbx_chem_comp_identifier.comp_id            F6P 
_pdbx_chem_comp_identifier.identifier         b-D-Fruf6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1RDX 
_atom_sites.fract_transf_matrix[1][1]    0.007616 
_atom_sites.fract_transf_matrix[1][2]    0.004397 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008794 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01506 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 F6P A 1 338 1 F6P F6P . 
D 2 F6P B 1 338 2 F6P F6P . 
E 3 HOH A 1 339 1 HOH HOH . 
E 3 HOH A 2 340 2 HOH HOH . 
E 3 HOH A 3 341 3 HOH HOH . 
E 3 HOH A 4 342 4 HOH HOH . 
E 3 HOH A 5 343 5 HOH HOH . 
E 3 HOH A 6 344 6 HOH HOH . 
E 3 HOH A 7 345 7 HOH HOH . 
E 3 HOH A 8 346 8 HOH HOH . 
E 3 HOH A 9 347 9 HOH HOH . 
E 3 HOH A 10 348 10 HOH HOH . 
E 3 HOH A 11 349 11 HOH HOH . 
E 3 HOH A 12 350 12 HOH HOH . 
E 3 HOH A 13 351 13 HOH HOH . 
E 3 HOH A 14 352 14 HOH HOH . 
E 3 HOH A 15 353 15 HOH HOH . 
E 3 HOH A 16 354 16 HOH HOH . 
E 3 HOH A 17 355 18 HOH HOH . 
E 3 HOH A 18 356 19 HOH HOH . 
E 3 HOH A 19 357 20 HOH HOH . 
E 3 HOH A 20 358 21 HOH HOH . 
E 3 HOH A 21 359 22 HOH HOH . 
E 3 HOH A 22 360 23 HOH HOH . 
E 3 HOH A 23 361 24 HOH HOH . 
E 3 HOH A 24 362 25 HOH HOH . 
E 3 HOH A 25 363 26 HOH HOH . 
E 3 HOH A 26 364 27 HOH HOH . 
E 3 HOH A 27 365 28 HOH HOH . 
E 3 HOH A 28 366 50 HOH HOH . 
E 3 HOH A 29 367 57 HOH HOH . 
F 3 HOH B 1 339 17 HOH HOH . 
F 3 HOH B 2 340 29 HOH HOH . 
F 3 HOH B 3 341 30 HOH HOH . 
F 3 HOH B 4 342 31 HOH HOH . 
F 3 HOH B 5 343 32 HOH HOH . 
F 3 HOH B 6 344 33 HOH HOH . 
F 3 HOH B 7 345 34 HOH HOH . 
F 3 HOH B 8 346 35 HOH HOH . 
F 3 HOH B 9 347 36 HOH HOH . 
F 3 HOH B 10 348 37 HOH HOH . 
F 3 HOH B 11 349 38 HOH HOH . 
F 3 HOH B 12 350 39 HOH HOH . 
F 3 HOH B 13 351 40 HOH HOH . 
F 3 HOH B 14 352 41 HOH HOH . 
F 3 HOH B 15 353 42 HOH HOH . 
F 3 HOH B 16 354 43 HOH HOH . 
F 3 HOH B 17 355 44 HOH HOH . 
F 3 HOH B 18 356 45 HOH HOH . 
F 3 HOH B 19 357 46 HOH HOH . 
F 3 HOH B 20 358 47 HOH HOH . 
F 3 HOH B 21 359 48 HOH HOH . 
F 3 HOH B 22 360 49 HOH HOH . 
F 3 HOH B 23 361 51 HOH HOH . 
F 3 HOH B 24 362 52 HOH HOH . 
F 3 HOH B 25 363 53 HOH HOH . 
F 3 HOH B 26 364 54 HOH HOH . 
F 3 HOH B 27 365 55 HOH HOH . 
F 3 HOH B 28 366 56 HOH HOH . 
F 3 HOH B 29 367 58 HOH HOH . 
F 3 HOH B 30 368 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 F6P . . . D 2 16.957 81.515 14.721 0.8 31.14 ? O1 F6P 338 B 1 
HETATM 2 C C1 F6P . . . D 2 17.07 82.208 13.503 0.8 25.7 ? C1 F6P 338 B 1 
HETATM 3 C C2 F6P . . . D 2 17.898 83.474 13.734 0.8 15.53 ? C2 F6P 338 B 1 
HETATM 4 O O2 F6P . . . D 2 17.922 84.352 12.642 0.8 13.38 ? O2 F6P 338 B 1 
HETATM 5 C C3 F6P . . . D 2 19.275 82.963 14.217 0.8 15.41 ? C3 F6P 338 B 1 
HETATM 6 O O3 F6P . . . D 2 20.474 83.214 13.49 0.8 2 ? O3 F6P 338 B 1 
HETATM 7 C C4 F6P . . . D 2 19.286 83.443 15.658 0.8 25.51 ? C4 F6P 338 B 1 
HETATM 8 O O4 F6P . . . D 2 19.222 82.322 16.52 0.8 28.51 ? O4 F6P 338 B 1 
HETATM 9 C C5 F6P . . . D 2 18.137 84.458 15.832 0.8 28.01 ? C5 F6P 338 B 1 
HETATM 10 O O5 F6P . . . D 2 17.296 84.219 14.706 0.8 21.22 ? O5 F6P 338 B 1 
HETATM 11 C C6 F6P . . . D 2 18.545 85.865 15.936 0.8 30.01 ? C6 F6P 338 B 1 
HETATM 12 O O6 F6P . . . D 2 17.361 86.784 15.816 0.8 36.1 ? O6 F6P 338 B 1 
HETATM 13 P P F6P . . . D 2 16.687 87.622 17.075 0.8 32.73 ? P F6P 338 B 1 
HETATM 14 O O1P F6P . . . D 2 15.432 88.36 16.586 0.8 20.05 ? O1P F6P 338 B 1 
HETATM 15 O O2P F6P . . . D 2 17.697 88.657 17.582 0.8 14.12 ? O2P F6P 338 B 1 
HETATM 16 O O3P F6P . . . D 2 16.247 86.669 18.201 0.8 15.2 ? O3P F6P 338 B 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#