data_1RDZ
#
_model_server_result.job_id            d30jJKvVr2Ed9nNyztZYYw 
_model_server_result.datetime_utc      '2024-10-20 19:43:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rdz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":338}' 
#
_entry.id    1RDZ 
#
_exptl.entry_id    1RDZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            6-O-phosphono-beta-D-fructofuranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RDZ 
_cell.length_a            61.06 
_cell.length_b            166.78 
_cell.length_c            79.92 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RDZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.06 166.78 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                F6P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              6-O-phosphono-beta-D-fructofuranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 F6P sing 122 n n 
O1 HO1 F6P sing 123 n n 
C1 C2 F6P sing 124 n n 
C1 H11 F6P sing 125 n n 
C1 H12 F6P sing 126 n n 
C2 O2 F6P sing 127 n n 
C2 C3 F6P sing 128 n n 
C2 O5 F6P sing 129 n n 
O2 HO2 F6P sing 130 n n 
C3 O3 F6P sing 131 n n 
C3 C4 F6P sing 132 n n 
C3 H3 F6P sing 133 n n 
O3 HO3 F6P sing 134 n n 
C4 O4 F6P sing 135 n n 
C4 C5 F6P sing 136 n n 
C4 H4 F6P sing 137 n n 
O4 HO4 F6P sing 138 n n 
C5 O5 F6P sing 139 n n 
C5 C6 F6P sing 140 n n 
C5 H5 F6P sing 141 n n 
C6 O6 F6P sing 142 n n 
C6 H61 F6P sing 143 n n 
C6 H62 F6P sing 144 n n 
O6 P F6P sing 145 n n 
P O1P F6P doub 146 n n 
P O2P F6P sing 147 n n 
P O3P F6P sing 148 n n 
O2P HOP2 F6P sing 149 n n 
O3P HOP3 F6P sing 150 n n 
#
_pdbx_chem_comp_identifier.comp_id            F6P 
_pdbx_chem_comp_identifier.identifier         b-D-Fruf6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1RDZ 
_atom_sites.fract_transf_matrix[1][1]    0.016377 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005996 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 F6P A 1 338 1 F6P F6P . 
D 3 AMP A 1 339 3 AMP AMP . 
E 2 F6P B 1 338 2 F6P F6P . 
F 3 AMP B 1 339 4 AMP AMP . 
G 4 HOH A 1 340 1 HOH HOH . 
G 4 HOH A 2 341 2 HOH HOH . 
G 4 HOH A 3 342 4 HOH HOH . 
G 4 HOH A 4 343 5 HOH HOH . 
G 4 HOH A 5 344 6 HOH HOH . 
G 4 HOH A 6 345 7 HOH HOH . 
G 4 HOH A 7 346 8 HOH HOH . 
G 4 HOH A 8 347 10 HOH HOH . 
G 4 HOH A 9 348 11 HOH HOH . 
G 4 HOH A 10 349 12 HOH HOH . 
G 4 HOH A 11 350 13 HOH HOH . 
G 4 HOH A 12 351 14 HOH HOH . 
G 4 HOH A 13 352 15 HOH HOH . 
G 4 HOH A 14 353 16 HOH HOH . 
G 4 HOH A 15 354 17 HOH HOH . 
G 4 HOH A 16 355 18 HOH HOH . 
G 4 HOH A 17 356 19 HOH HOH . 
G 4 HOH A 18 357 20 HOH HOH . 
G 4 HOH A 19 358 21 HOH HOH . 
G 4 HOH A 20 359 22 HOH HOH . 
G 4 HOH A 21 360 23 HOH HOH . 
G 4 HOH A 22 361 24 HOH HOH . 
G 4 HOH A 23 362 26 HOH HOH . 
G 4 HOH A 24 363 27 HOH HOH . 
G 4 HOH A 25 364 28 HOH HOH . 
G 4 HOH A 26 365 29 HOH HOH . 
G 4 HOH A 27 366 30 HOH HOH . 
G 4 HOH A 28 367 31 HOH HOH . 
G 4 HOH A 29 368 32 HOH HOH . 
G 4 HOH A 30 369 33 HOH HOH . 
G 4 HOH A 31 370 35 HOH HOH . 
G 4 HOH A 32 371 36 HOH HOH . 
G 4 HOH A 33 372 37 HOH HOH . 
G 4 HOH A 34 373 38 HOH HOH . 
G 4 HOH A 35 374 39 HOH HOH . 
G 4 HOH A 36 375 40 HOH HOH . 
G 4 HOH A 37 376 41 HOH HOH . 
G 4 HOH A 38 377 42 HOH HOH . 
G 4 HOH A 39 378 43 HOH HOH . 
G 4 HOH A 40 379 44 HOH HOH . 
G 4 HOH A 41 380 45 HOH HOH . 
G 4 HOH A 42 381 46 HOH HOH . 
G 4 HOH A 43 382 47 HOH HOH . 
G 4 HOH A 44 383 53 HOH HOH . 
G 4 HOH A 45 384 56 HOH HOH . 
G 4 HOH A 46 385 58 HOH HOH . 
G 4 HOH A 47 386 68 HOH HOH . 
G 4 HOH A 48 387 69 HOH HOH . 
G 4 HOH A 49 388 79 HOH HOH . 
G 4 HOH A 50 389 80 HOH HOH . 
G 4 HOH A 51 390 100 HOH HOH . 
G 4 HOH A 52 391 101 HOH HOH . 
G 4 HOH A 53 392 102 HOH HOH . 
G 4 HOH A 54 393 103 HOH HOH . 
G 4 HOH A 55 394 106 HOH HOH . 
G 4 HOH A 56 395 107 HOH HOH . 
G 4 HOH A 57 396 108 HOH HOH . 
G 4 HOH A 58 397 112 HOH HOH . 
G 4 HOH A 59 398 126 HOH HOH . 
G 4 HOH A 60 399 128 HOH HOH . 
G 4 HOH A 61 400 130 HOH HOH . 
G 4 HOH A 62 401 131 HOH HOH . 
G 4 HOH A 63 402 132 HOH HOH . 
G 4 HOH A 64 403 133 HOH HOH . 
G 4 HOH A 65 404 134 HOH HOH . 
G 4 HOH A 66 405 137 HOH HOH . 
G 4 HOH A 67 406 138 HOH HOH . 
G 4 HOH A 68 407 142 HOH HOH . 
G 4 HOH A 69 408 146 HOH HOH . 
G 4 HOH A 70 409 151 HOH HOH . 
G 4 HOH A 71 410 152 HOH HOH . 
G 4 HOH A 72 411 154 HOH HOH . 
G 4 HOH A 73 412 161 HOH HOH . 
G 4 HOH A 74 413 163 HOH HOH . 
G 4 HOH A 75 414 164 HOH HOH . 
G 4 HOH A 76 415 165 HOH HOH . 
G 4 HOH A 77 416 167 HOH HOH . 
G 4 HOH A 78 417 168 HOH HOH . 
G 4 HOH A 79 418 169 HOH HOH . 
G 4 HOH A 80 419 170 HOH HOH . 
G 4 HOH A 81 420 171 HOH HOH . 
G 4 HOH A 82 421 172 HOH HOH . 
G 4 HOH A 83 422 173 HOH HOH . 
G 4 HOH A 84 423 174 HOH HOH . 
G 4 HOH A 85 424 175 HOH HOH . 
G 4 HOH A 86 425 176 HOH HOH . 
G 4 HOH A 87 426 177 HOH HOH . 
G 4 HOH A 88 427 178 HOH HOH . 
H 4 HOH B 1 340 3 HOH HOH . 
H 4 HOH B 2 341 9 HOH HOH . 
H 4 HOH B 3 342 25 HOH HOH . 
H 4 HOH B 4 343 34 HOH HOH . 
H 4 HOH B 5 344 48 HOH HOH . 
H 4 HOH B 6 345 49 HOH HOH . 
H 4 HOH B 7 346 50 HOH HOH . 
H 4 HOH B 8 347 51 HOH HOH . 
H 4 HOH B 9 348 52 HOH HOH . 
H 4 HOH B 10 349 54 HOH HOH . 
H 4 HOH B 11 350 55 HOH HOH . 
H 4 HOH B 12 351 57 HOH HOH . 
H 4 HOH B 13 352 59 HOH HOH . 
H 4 HOH B 14 353 60 HOH HOH . 
H 4 HOH B 15 354 61 HOH HOH . 
H 4 HOH B 16 355 62 HOH HOH . 
H 4 HOH B 17 356 63 HOH HOH . 
H 4 HOH B 18 357 64 HOH HOH . 
H 4 HOH B 19 358 65 HOH HOH . 
H 4 HOH B 20 359 66 HOH HOH . 
H 4 HOH B 21 360 67 HOH HOH . 
H 4 HOH B 22 361 70 HOH HOH . 
H 4 HOH B 23 362 71 HOH HOH . 
H 4 HOH B 24 363 72 HOH HOH . 
H 4 HOH B 25 364 73 HOH HOH . 
H 4 HOH B 26 365 74 HOH HOH . 
H 4 HOH B 27 366 75 HOH HOH . 
H 4 HOH B 28 367 76 HOH HOH . 
H 4 HOH B 29 368 77 HOH HOH . 
H 4 HOH B 30 369 78 HOH HOH . 
H 4 HOH B 31 370 81 HOH HOH . 
H 4 HOH B 32 371 82 HOH HOH . 
H 4 HOH B 33 372 83 HOH HOH . 
H 4 HOH B 34 373 84 HOH HOH . 
H 4 HOH B 35 374 85 HOH HOH . 
H 4 HOH B 36 375 86 HOH HOH . 
H 4 HOH B 37 376 87 HOH HOH . 
H 4 HOH B 38 377 88 HOH HOH . 
H 4 HOH B 39 378 89 HOH HOH . 
H 4 HOH B 40 379 90 HOH HOH . 
H 4 HOH B 41 380 91 HOH HOH . 
H 4 HOH B 42 381 92 HOH HOH . 
H 4 HOH B 43 382 93 HOH HOH . 
H 4 HOH B 44 383 94 HOH HOH . 
H 4 HOH B 45 384 95 HOH HOH . 
H 4 HOH B 46 385 96 HOH HOH . 
H 4 HOH B 47 386 97 HOH HOH . 
H 4 HOH B 48 387 98 HOH HOH . 
H 4 HOH B 49 388 99 HOH HOH . 
H 4 HOH B 50 389 104 HOH HOH . 
H 4 HOH B 51 390 105 HOH HOH . 
H 4 HOH B 52 391 109 HOH HOH . 
H 4 HOH B 53 392 110 HOH HOH . 
H 4 HOH B 54 393 111 HOH HOH . 
H 4 HOH B 55 394 113 HOH HOH . 
H 4 HOH B 56 395 114 HOH HOH . 
H 4 HOH B 57 396 115 HOH HOH . 
H 4 HOH B 58 397 116 HOH HOH . 
H 4 HOH B 59 398 117 HOH HOH . 
H 4 HOH B 60 399 118 HOH HOH . 
H 4 HOH B 61 400 119 HOH HOH . 
H 4 HOH B 62 401 120 HOH HOH . 
H 4 HOH B 63 402 121 HOH HOH . 
H 4 HOH B 64 403 122 HOH HOH . 
H 4 HOH B 65 404 123 HOH HOH . 
H 4 HOH B 66 405 124 HOH HOH . 
H 4 HOH B 67 406 125 HOH HOH . 
H 4 HOH B 68 407 127 HOH HOH . 
H 4 HOH B 69 408 129 HOH HOH . 
H 4 HOH B 70 409 135 HOH HOH . 
H 4 HOH B 71 410 136 HOH HOH . 
H 4 HOH B 72 411 139 HOH HOH . 
H 4 HOH B 73 412 140 HOH HOH . 
H 4 HOH B 74 413 141 HOH HOH . 
H 4 HOH B 75 414 143 HOH HOH . 
H 4 HOH B 76 415 144 HOH HOH . 
H 4 HOH B 77 416 145 HOH HOH . 
H 4 HOH B 78 417 147 HOH HOH . 
H 4 HOH B 79 418 148 HOH HOH . 
H 4 HOH B 80 419 149 HOH HOH . 
H 4 HOH B 81 420 150 HOH HOH . 
H 4 HOH B 82 421 153 HOH HOH . 
H 4 HOH B 83 422 155 HOH HOH . 
H 4 HOH B 84 423 156 HOH HOH . 
H 4 HOH B 85 424 157 HOH HOH . 
H 4 HOH B 86 425 158 HOH HOH . 
H 4 HOH B 87 426 159 HOH HOH . 
H 4 HOH B 88 427 160 HOH HOH . 
H 4 HOH B 89 428 162 HOH HOH . 
H 4 HOH B 90 429 166 HOH HOH . 
H 4 HOH B 91 430 179 HOH HOH . 
H 4 HOH B 92 431 180 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 F6P . . . C 2 44.497 109.226 10.812 1 42.34 ? O1 F6P 338 A 1 
HETATM 2 C C1 F6P . . . C 2 43.198 108.679 10.91 1 42.24 ? C1 F6P 338 A 1 
HETATM 3 C C2 F6P . . . C 2 42.434 109.09 12.192 1 41.45 ? C2 F6P 338 A 1 
HETATM 4 O O2 F6P . . . C 2 42.708 108.067 13.189 1 38.36 ? O2 F6P 338 A 1 
HETATM 5 C C3 F6P . . . C 2 40.908 109.21 11.884 1 38.09 ? C3 F6P 338 A 1 
HETATM 6 O O3 F6P . . . C 2 40.337 107.943 12.173 1 32.24 ? O3 F6P 338 A 1 
HETATM 7 C C4 F6P . . . C 2 40.391 110.36 12.791 1 35.54 ? C4 F6P 338 A 1 
HETATM 8 O O4 F6P . . . C 2 39.097 110.875 12.491 1 31.06 ? O4 F6P 338 A 1 
HETATM 9 C C5 F6P . . . C 2 41.63 111.267 12.827 1 38.04 ? C5 F6P 338 A 1 
HETATM 10 O O5 F6P . . . C 2 42.775 110.415 12.601 1 43.79 ? O5 F6P 338 A 1 
HETATM 11 C C6 F6P . . . C 2 41.727 111.879 14.139 1 40.3 ? C6 F6P 338 A 1 
HETATM 12 O O6 F6P . . . C 2 42.997 112.62 14.336 1 42.39 ? O6 F6P 338 A 1 
HETATM 13 P P F6P . . . C 2 42.933 113.879 15.377 1 48.54 ? P F6P 338 A 1 
HETATM 14 O O1P F6P . . . C 2 41.656 114.704 15.184 1 43.54 ? O1P F6P 338 A 1 
HETATM 15 O O2P F6P . . . C 2 42.987 113.343 16.816 1 51.66 ? O2P F6P 338 A 1 
HETATM 16 O O3P F6P . . . C 2 44.115 114.845 15.211 1 50.24 ? O3P F6P 338 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           398 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           16 
#