data_1RE0 # _model_server_result.job_id hYYQgckWxauB3r2kIojsfA _model_server_result.datetime_utc '2024-10-11 00:22:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1re0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 1RE0 # _exptl.entry_id 1RE0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 280.359 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,6,7,8,9,11A,12,13,14,14A-DECAHYDRO-1,13-DIHYDROXY-6-METHYL-4H-CYCLOPENT[F]OXACYCLOTRIDECIN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RE0 _cell.length_a 64.725 _cell.length_b 72.294 _cell.length_c 119.632 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 14 A THR 31 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? metalc ? metalc2 D O2B GDP . A GDP 700 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 C MG MG . A MG 701 1_555 G O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc4 C MG MG . A MG 701 1_555 G O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 C MG MG . A MG 701 1_555 G O HOH . A HOH 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc6 C MG MG . A MG 701 1_555 G O HOH . A HOH 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C16 H24 O4' _chem_comp.formula_weight 280.359 _chem_comp.id AFB _chem_comp.mon_nstd_flag . _chem_comp.name 1,6,7,8,9,11A,12,13,14,14A-DECAHYDRO-1,13-DIHYDROXY-6-METHYL-4H-CYCLOPENT[F]OXACYCLOTRIDECIN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'BREFELDIN A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OC7 C7 AFB sing 1 n n OC7 HO7 AFB sing 2 n n C7 C8 AFB sing 3 n n C7 C6 AFB sing 4 n n C7 HC7 AFB sing 5 n n C8 C9 AFB sing 6 n n C8 H81 AFB sing 7 n n C8 H82 AFB sing 8 n n C6 C5 AFB sing 9 n n C6 H61 AFB sing 10 n n C6 H62 AFB sing 11 n n C5 C9 AFB sing 12 n n C5 C4 AFB sing 13 n n C5 H5 AFB sing 14 n n C9 C10 AFB sing 15 n n C9 H9 AFB sing 16 n n C10 C11 AFB doub 17 e n C10 H101 AFB sing 18 n n C11 C12 AFB sing 19 n n C11 H111 AFB sing 20 n n C12 C13 AFB sing 21 n n C12 H121 AFB sing 22 n n C12 H122 AFB sing 23 n n C13 C14 AFB sing 24 n n C13 H131 AFB sing 25 n n C13 H132 AFB sing 26 n n C14 C15 AFB sing 27 n n C14 H141 AFB sing 28 n n C14 H142 AFB sing 29 n n C15 C16 AFB sing 30 n n C15 O16 AFB sing 31 n n C15 H15 AFB sing 32 n n C16 H161 AFB sing 33 n n C16 H162 AFB sing 34 n n C16 H163 AFB sing 35 n n O16 C1 AFB sing 36 n n C1 OC1 AFB doub 37 n n C1 C2 AFB sing 38 n n C2 C3 AFB doub 39 e n C2 H21 AFB sing 40 n n C3 C4 AFB sing 41 n n C3 H31 AFB sing 42 n n C4 OC4 AFB sing 43 n n C4 HC4 AFB sing 44 n n OC4 HO4 AFB sing 45 n n # _atom_sites.entry_id 1RE0 _atom_sites.fract_transf_matrix[1][1] 0.01545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 701 701 MG MG . D 4 GDP A 1 700 700 GDP GDP . E 5 AFB A 1 702 1 AFB BRE . F 6 CIT A 1 703 1 CIT CIT . G 7 HOH A 1 704 1 HOH TIP . G 7 HOH A 2 705 4 HOH TIP . G 7 HOH A 3 706 5 HOH TIP . G 7 HOH A 4 707 8 HOH TIP . G 7 HOH A 5 708 9 HOH TIP . G 7 HOH A 6 709 13 HOH TIP . G 7 HOH A 7 710 14 HOH TIP . G 7 HOH A 8 711 16 HOH TIP . G 7 HOH A 9 712 18 HOH TIP . G 7 HOH A 10 713 19 HOH TIP . G 7 HOH A 11 714 22 HOH TIP . G 7 HOH A 12 715 23 HOH TIP . G 7 HOH A 13 716 24 HOH TIP . G 7 HOH A 14 717 25 HOH TIP . G 7 HOH A 15 718 26 HOH TIP . G 7 HOH A 16 719 27 HOH TIP . G 7 HOH A 17 720 30 HOH TIP . G 7 HOH A 18 721 33 HOH TIP . G 7 HOH A 19 722 37 HOH TIP . G 7 HOH A 20 723 38 HOH TIP . G 7 HOH A 21 724 43 HOH TIP . G 7 HOH A 22 725 44 HOH TIP . G 7 HOH A 23 726 48 HOH TIP . G 7 HOH A 24 727 50 HOH TIP . G 7 HOH A 25 728 55 HOH TIP . G 7 HOH A 26 729 59 HOH TIP . G 7 HOH A 27 730 61 HOH TIP . G 7 HOH A 28 731 62 HOH TIP . G 7 HOH A 29 732 63 HOH TIP . G 7 HOH A 30 733 65 HOH TIP . G 7 HOH A 31 734 66 HOH TIP . G 7 HOH A 32 735 69 HOH TIP . G 7 HOH A 33 736 74 HOH TIP . G 7 HOH A 34 737 76 HOH TIP . G 7 HOH A 35 738 78 HOH TIP . G 7 HOH A 36 739 82 HOH TIP . G 7 HOH A 37 740 83 HOH TIP . G 7 HOH A 38 741 86 HOH TIP . G 7 HOH A 39 742 87 HOH TIP . G 7 HOH A 40 743 88 HOH TIP . G 7 HOH A 41 744 89 HOH TIP . G 7 HOH A 42 745 94 HOH TIP . G 7 HOH A 43 746 100 HOH TIP . G 7 HOH A 44 747 101 HOH TIP . G 7 HOH A 45 748 102 HOH TIP . G 7 HOH A 46 749 109 HOH TIP . G 7 HOH A 47 750 110 HOH TIP . G 7 HOH A 48 751 111 HOH TIP . G 7 HOH A 49 752 113 HOH TIP . H 7 HOH B 1 316 2 HOH TIP . H 7 HOH B 2 317 3 HOH TIP . H 7 HOH B 3 318 6 HOH TIP . H 7 HOH B 4 319 7 HOH TIP . H 7 HOH B 5 320 10 HOH TIP . H 7 HOH B 6 321 11 HOH TIP . H 7 HOH B 7 322 12 HOH TIP . H 7 HOH B 8 323 15 HOH TIP . H 7 HOH B 9 324 17 HOH TIP . H 7 HOH B 10 325 20 HOH TIP . H 7 HOH B 11 326 21 HOH TIP . H 7 HOH B 12 327 28 HOH TIP . H 7 HOH B 13 328 29 HOH TIP . H 7 HOH B 14 329 31 HOH TIP . H 7 HOH B 15 330 32 HOH TIP . H 7 HOH B 16 331 34 HOH TIP . H 7 HOH B 17 332 35 HOH TIP . H 7 HOH B 18 333 36 HOH TIP . H 7 HOH B 19 334 39 HOH TIP . H 7 HOH B 20 335 40 HOH TIP . H 7 HOH B 21 336 41 HOH TIP . H 7 HOH B 22 337 42 HOH TIP . H 7 HOH B 23 338 45 HOH TIP . H 7 HOH B 24 339 46 HOH TIP . H 7 HOH B 25 340 47 HOH TIP . H 7 HOH B 26 341 49 HOH TIP . H 7 HOH B 27 342 51 HOH TIP . H 7 HOH B 28 343 52 HOH TIP . H 7 HOH B 29 344 53 HOH TIP . H 7 HOH B 30 345 54 HOH TIP . H 7 HOH B 31 346 56 HOH TIP . H 7 HOH B 32 347 57 HOH TIP . H 7 HOH B 33 348 58 HOH TIP . H 7 HOH B 34 349 60 HOH TIP . H 7 HOH B 35 350 64 HOH TIP . H 7 HOH B 36 351 67 HOH TIP . H 7 HOH B 37 352 68 HOH TIP . H 7 HOH B 38 353 70 HOH TIP . H 7 HOH B 39 354 71 HOH TIP . H 7 HOH B 40 355 72 HOH TIP . H 7 HOH B 41 356 73 HOH TIP . H 7 HOH B 42 357 75 HOH TIP . H 7 HOH B 43 358 77 HOH TIP . H 7 HOH B 44 359 79 HOH TIP . H 7 HOH B 45 360 80 HOH TIP . H 7 HOH B 46 361 81 HOH TIP . H 7 HOH B 47 362 84 HOH TIP . H 7 HOH B 48 363 85 HOH TIP . H 7 HOH B 49 364 90 HOH TIP . H 7 HOH B 50 365 91 HOH TIP . H 7 HOH B 51 366 92 HOH TIP . H 7 HOH B 52 367 93 HOH TIP . H 7 HOH B 53 368 95 HOH TIP . H 7 HOH B 54 369 96 HOH TIP . H 7 HOH B 55 370 97 HOH TIP . H 7 HOH B 56 371 98 HOH TIP . H 7 HOH B 57 372 99 HOH TIP . H 7 HOH B 58 373 103 HOH TIP . H 7 HOH B 59 374 104 HOH TIP . H 7 HOH B 60 375 105 HOH TIP . H 7 HOH B 61 376 106 HOH TIP . H 7 HOH B 62 377 107 HOH TIP . H 7 HOH B 63 378 108 HOH TIP . H 7 HOH B 64 379 112 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OC7 AFB . . . E 5 41.712 12.216 35.54 1 28.72 ? OC7 AFB 702 A 1 HETATM 2 C C7 AFB . . . E 5 41.634 10.937 36.255 1 29.83 ? C7 AFB 702 A 1 HETATM 3 C C8 AFB . . . E 5 42.975 10.479 36.771 1 28 ? C8 AFB 702 A 1 HETATM 4 C C6 AFB . . . E 5 40.791 10.786 37.49 1 28.35 ? C6 AFB 702 A 1 HETATM 5 C C5 AFB . . . E 5 41.112 9.344 37.942 1 28.59 ? C5 AFB 702 A 1 HETATM 6 C C9 AFB . . . E 5 42.625 9.141 37.424 1 28.65 ? C9 AFB 702 A 1 HETATM 7 C C10 AFB . . . E 5 43.535 8.758 38.548 1 28.76 ? C10 AFB 702 A 1 HETATM 8 C C11 AFB . . . E 5 44.062 7.559 38.697 1 29.2 ? C11 AFB 702 A 1 HETATM 9 C C12 AFB . . . E 5 44.978 7.091 39.816 1 29.86 ? C12 AFB 702 A 1 HETATM 10 C C13 AFB . . . E 5 44.418 5.892 40.606 1 30.61 ? C13 AFB 702 A 1 HETATM 11 C C14 AFB . . . E 5 44.259 4.581 39.814 1 29.72 ? C14 AFB 702 A 1 HETATM 12 C C15 AFB . . . E 5 42.878 3.922 39.864 1 26.87 ? C15 AFB 702 A 1 HETATM 13 C C16 AFB . . . E 5 42.825 2.663 39.071 1 26.44 ? C16 AFB 702 A 1 HETATM 14 O O16 AFB . . . E 5 42.006 4.939 39.27 1 29.04 ? O16 AFB 702 A 1 HETATM 15 C C1 AFB . . . E 5 40.706 5.04 39.63 1 28.02 ? C1 AFB 702 A 1 HETATM 16 O OC1 AFB . . . E 5 40.161 4.333 40.435 1 27.81 ? OC1 AFB 702 A 1 HETATM 17 C C2 AFB . . . E 5 39.991 6.133 38.932 1 27.04 ? C2 AFB 702 A 1 HETATM 18 C C3 AFB . . . E 5 40.582 6.919 38.053 1 29.14 ? C3 AFB 702 A 1 HETATM 19 C C4 AFB . . . E 5 40.098 8.247 37.512 1 28.56 ? C4 AFB 702 A 1 HETATM 20 O OC4 AFB . . . E 5 38.834 8.617 38.061 1 31.33 ? OC4 AFB 702 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #