data_1RE1 # _model_server_result.job_id P91X69yDlkKm5UE6CDUy7w _model_server_result.datetime_utc '2024-10-19 16:41:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1re1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1RE1 # _exptl.entry_id 1RE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.093 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S)-3-{[(5-BROMOPYRIDIN-3-YL)CARBONYL]AMINO}-4-OXOBUTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RE1 _cell.length_a 69.78 _cell.length_b 83.76 _cell.length_c 95.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 69.78 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 135 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C4 _struct_conn.ptnr2_label_comp_id NA3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA3 _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.769 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H9 Br N2 O4' _chem_comp.formula_weight 301.093 _chem_comp.id NA3 _chem_comp.mon_nstd_flag . _chem_comp.name '(3S)-3-{[(5-BROMOPYRIDIN-3-YL)CARBONYL]AMINO}-4-OXOBUTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 NA3 doub 237 n y C7 C6 NA3 sing 238 n y C7 H7 NA3 sing 239 n n C8 C9 NA3 sing 240 n y C8 BR1 NA3 sing 241 n n C9 N2 NA3 doub 242 n y C9 H9 NA3 sing 243 n n N2 C10 NA3 sing 244 n y C10 C6 NA3 doub 245 n y C10 H10 NA3 sing 246 n n C6 C5 NA3 sing 247 n n C5 O4 NA3 doub 248 n n C5 N1 NA3 sing 249 n n N1 C3 NA3 sing 250 n n N1 HN1 NA3 sing 251 n n C3 C2 NA3 sing 252 n n C3 C4 NA3 sing 253 n n C3 H3 NA3 sing 254 n n C2 C1 NA3 sing 255 n n C2 H21 NA3 sing 256 n n C2 H22 NA3 sing 257 n n C4 O3 NA3 doub 258 n n C4 H4 NA3 sing 259 n n C1 O2 NA3 sing 260 n n C1 O1 NA3 doub 261 n n O2 HO2 NA3 sing 262 n n # _atom_sites.entry_id 1RE1 _atom_sites.fract_transf_matrix[1][1] 0.014331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA3 A 1 501 501 NA3 NA3 . D 4 HOH A 1 602 602 HOH HOH . D 4 HOH A 2 605 605 HOH HOH . D 4 HOH A 3 608 608 HOH HOH . D 4 HOH A 4 609 609 HOH HOH . D 4 HOH A 5 610 610 HOH HOH . D 4 HOH A 6 612 612 HOH HOH . D 4 HOH A 7 613 613 HOH HOH . D 4 HOH A 8 614 614 HOH HOH . D 4 HOH A 9 616 616 HOH HOH . D 4 HOH A 10 617 617 HOH HOH . D 4 HOH A 11 618 618 HOH HOH . D 4 HOH A 12 619 619 HOH HOH . D 4 HOH A 13 621 621 HOH HOH . D 4 HOH A 14 622 622 HOH HOH . D 4 HOH A 15 624 624 HOH HOH . D 4 HOH A 16 625 625 HOH HOH . E 4 HOH B 1 601 601 HOH HOH . E 4 HOH B 2 603 603 HOH HOH . E 4 HOH B 3 604 604 HOH HOH . E 4 HOH B 4 606 606 HOH HOH . E 4 HOH B 5 607 607 HOH HOH . E 4 HOH B 6 611 611 HOH HOH . E 4 HOH B 7 615 615 HOH HOH . E 4 HOH B 8 620 620 HOH HOH . E 4 HOH B 9 623 623 HOH HOH . E 4 HOH B 10 626 626 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 NA3 . . . C 3 39.126 92.695 21.194 1 35.89 ? C7 NA3 501 A 1 HETATM 2 C C8 NA3 . . . C 3 40.071 93.41 21.902 1 38.41 ? C8 NA3 501 A 1 HETATM 3 C C9 NA3 . . . C 3 40.311 94.746 21.621 1 35.51 ? C9 NA3 501 A 1 HETATM 4 N N2 NA3 . . . C 3 39.665 95.388 20.669 1 31.96 ? N2 NA3 501 A 1 HETATM 5 C C10 NA3 . . . C 3 38.739 94.686 19.969 1 33.85 ? C10 NA3 501 A 1 HETATM 6 C C6 NA3 . . . C 3 38.426 93.337 20.187 1 32.77 ? C6 NA3 501 A 1 HETATM 7 BR BR1 NA3 . . . C 3 41.022 92.501 23.243 1 41.87 ? BR1 NA3 501 A 1 HETATM 8 C C5 NA3 . . . C 3 37.278 92.669 19.435 1 30.05 ? C5 NA3 501 A 1 HETATM 9 O O4 NA3 . . . C 3 36.769 91.597 19.759 1 31.57 ? O4 NA3 501 A 1 HETATM 10 N N1 NA3 . . . C 3 36.9 93.34 18.347 1 26.22 ? N1 NA3 501 A 1 HETATM 11 C C3 NA3 . . . C 3 35.755 92.937 17.507 1 20.83 ? C3 NA3 501 A 1 HETATM 12 C C2 NA3 . . . C 3 34.956 94.161 17.012 1 19.16 ? C2 NA3 501 A 1 HETATM 13 C C4 NA3 . . . C 3 36.062 91.88 16.406 1 18.94 ? C4 NA3 501 A 1 HETATM 14 O O3 NA3 . . . C 3 34.867 91.53 15.705 1 21.78 ? O3 NA3 501 A 1 HETATM 15 C C1 NA3 . . . C 3 34.37 94.951 18.16 1 18.86 ? C1 NA3 501 A 1 HETATM 16 O O2 NA3 . . . C 3 33.947 96.117 17.99 1 20.44 ? O2 NA3 501 A 1 HETATM 17 O O1 NA3 . . . C 3 34.288 94.402 19.277 1 16.19 ? O1 NA3 501 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #