data_1RE2 # _model_server_result.job_id 47-zf9YuoE67aIi4dqmLgg _model_server_result.datetime_utc '2024-11-22 23:49:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1re2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":136}' # _entry.id 1RE2 # _exptl.entry_id 1RE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RE2 _cell.length_a 56.45 _cell.length_b 62.3 _cell.length_c 32.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 132 NAG 2 n B GAL 2 B 2 GAL B 131 GAL 2 n C NAG 1 C 1 NAG B 134 NAG 2 n C GAL 2 C 2 GAL B 133 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 65 A CYS 65 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 77 A CYS 77 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A OE1 GLU 35 A GLU 35 1_555 E C3 GOL . A GOL 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale2 A OD2 ASP 53 A ASP 53 1_555 D C3 GOL . A GOL 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale3 D O1 GOL . A GOL 135 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale4 E O1 GOL . A GOL 136 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 1RE2 _atom_sites.fract_transf_matrix[1][1] 0.017715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 135 135 GOL GOL . E 3 GOL A 1 136 136 GOL GOL . F 4 HOH A 1 137 137 HOH HOH . F 4 HOH A 2 138 138 HOH HOH . F 4 HOH A 3 139 139 HOH HOH . F 4 HOH A 4 140 140 HOH HOH . F 4 HOH A 5 141 141 HOH HOH . F 4 HOH A 6 142 142 HOH HOH . F 4 HOH A 7 143 143 HOH HOH . F 4 HOH A 8 144 144 HOH HOH . F 4 HOH A 9 145 145 HOH HOH . F 4 HOH A 10 146 146 HOH HOH . F 4 HOH A 11 147 147 HOH HOH . F 4 HOH A 12 148 148 HOH HOH . F 4 HOH A 13 149 149 HOH HOH . F 4 HOH A 14 150 150 HOH HOH . F 4 HOH A 15 151 151 HOH HOH . F 4 HOH A 16 152 152 HOH HOH . F 4 HOH A 17 153 153 HOH HOH . F 4 HOH A 18 154 154 HOH HOH . F 4 HOH A 19 155 155 HOH HOH . F 4 HOH A 20 156 156 HOH HOH . F 4 HOH A 21 157 157 HOH HOH . F 4 HOH A 22 158 158 HOH HOH . F 4 HOH A 23 159 159 HOH HOH . F 4 HOH A 24 160 160 HOH HOH . F 4 HOH A 25 161 161 HOH HOH . F 4 HOH A 26 162 162 HOH HOH . F 4 HOH A 27 163 163 HOH HOH . F 4 HOH A 28 164 164 HOH HOH . F 4 HOH A 29 165 165 HOH HOH . F 4 HOH A 30 166 166 HOH HOH . F 4 HOH A 31 167 167 HOH HOH . F 4 HOH A 32 168 168 HOH HOH . F 4 HOH A 33 169 169 HOH HOH . F 4 HOH A 34 170 170 HOH HOH . F 4 HOH A 35 171 171 HOH HOH . F 4 HOH A 36 172 172 HOH HOH . F 4 HOH A 37 173 173 HOH HOH . F 4 HOH A 38 174 174 HOH HOH . F 4 HOH A 39 175 175 HOH HOH . F 4 HOH A 40 176 176 HOH HOH . F 4 HOH A 41 177 177 HOH HOH . F 4 HOH A 42 178 178 HOH HOH . F 4 HOH A 43 179 179 HOH HOH . F 4 HOH A 44 180 180 HOH HOH . F 4 HOH A 45 181 181 HOH HOH . F 4 HOH A 46 182 182 HOH HOH . F 4 HOH A 47 183 183 HOH HOH . F 4 HOH A 48 184 184 HOH HOH . F 4 HOH A 49 185 185 HOH HOH . F 4 HOH A 50 186 186 HOH HOH . F 4 HOH A 51 187 187 HOH HOH . F 4 HOH A 52 188 188 HOH HOH . F 4 HOH A 53 189 189 HOH HOH . F 4 HOH A 54 190 190 HOH HOH . F 4 HOH A 55 191 191 HOH HOH . F 4 HOH A 56 192 192 HOH HOH . F 4 HOH A 57 193 193 HOH HOH . F 4 HOH A 58 194 194 HOH HOH . F 4 HOH A 59 195 195 HOH HOH . F 4 HOH A 60 196 196 HOH HOH . F 4 HOH A 61 197 197 HOH HOH . F 4 HOH A 62 198 198 HOH HOH . F 4 HOH A 63 199 199 HOH HOH . F 4 HOH A 64 200 200 HOH HOH . F 4 HOH A 65 201 201 HOH HOH . F 4 HOH A 66 202 202 HOH HOH . F 4 HOH A 67 203 203 HOH HOH . F 4 HOH A 68 204 204 HOH HOH . F 4 HOH A 69 205 205 HOH HOH . F 4 HOH A 70 206 206 HOH HOH . F 4 HOH A 71 207 207 HOH HOH . F 4 HOH A 72 208 208 HOH HOH . F 4 HOH A 73 209 209 HOH HOH . F 4 HOH A 74 210 210 HOH HOH . F 4 HOH A 75 211 211 HOH HOH . F 4 HOH A 76 212 212 HOH HOH . F 4 HOH A 77 213 213 HOH HOH . F 4 HOH A 78 214 214 HOH HOH . F 4 HOH A 79 215 215 HOH HOH . F 4 HOH A 80 216 216 HOH HOH . F 4 HOH A 81 217 217 HOH HOH . F 4 HOH A 82 218 218 HOH HOH . F 4 HOH A 83 219 219 HOH HOH . F 4 HOH A 84 220 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 14.982 5.848 26.781 1 37.68 ? C1 GOL 136 A 1 HETATM 2 O O1 GOL . . . E 3 16.349 5.437 27.055 1 43.21 ? O1 GOL 136 A 1 HETATM 3 C C2 GOL . . . E 3 14.951 7.331 26.317 1 32.87 ? C2 GOL 136 A 1 HETATM 4 O O2 GOL . . . E 3 14.362 8.139 27.334 1 33.65 ? O2 GOL 136 A 1 HETATM 5 C C3 GOL . . . E 3 14.191 7.523 24.984 1 27.61 ? C3 GOL 136 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #