data_1REE # _model_server_result.job_id QyHyxGp07Zbxe9laAIUTYw _model_server_result.datetime_utc '2024-12-26 11:03:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ree # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 1REE # _exptl.entry_id 1REE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.2 _cell.angle_gamma 90 _cell.entry_id 1REE _cell.length_a 81.84 _cell.length_b 60.81 _cell.length_c 38.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1REE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C PCA 1 B PCA 1 1_555 B N THR 2 B THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B OE2 GLU 177 B GLU 177 1_555 C C4' 07E . B 07E 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 103 n n C O2 BEZ sing 104 n n C C1 BEZ sing 105 n n O2 HO2 BEZ sing 106 n n C1 C2 BEZ doub 107 n y C1 C6 BEZ sing 108 n y C2 C3 BEZ sing 109 n y C2 H2 BEZ sing 110 n n C3 C4 BEZ doub 111 n y C3 H3 BEZ sing 112 n n C4 C5 BEZ sing 113 n y C4 H4 BEZ sing 114 n n C5 C6 BEZ doub 115 n y C5 H5 BEZ sing 116 n n C6 H6 BEZ sing 117 n n # _atom_sites.entry_id 1REE _atom_sites.fract_transf_matrix[1][1] 0.012219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000897 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 07E B 1 401 401 07E C4X . D 3 BEZ B 1 402 402 BEZ BEZ . E 4 HOH A 1 532 532 HOH HOH . E 4 HOH A 2 534 534 HOH HOH . E 4 HOH A 3 541 541 HOH HOH . E 4 HOH A 4 542 542 HOH HOH . E 4 HOH A 5 543 543 HOH HOH . E 4 HOH A 6 544 544 HOH HOH . E 4 HOH A 7 545 545 HOH HOH . E 4 HOH A 8 546 546 HOH HOH . E 4 HOH A 9 547 547 HOH HOH . E 4 HOH A 10 548 548 HOH HOH . E 4 HOH A 11 549 549 HOH HOH . E 4 HOH A 12 550 550 HOH HOH . E 4 HOH A 13 551 551 HOH HOH . E 4 HOH A 14 552 552 HOH HOH . E 4 HOH A 15 553 553 HOH HOH . E 4 HOH A 16 554 554 HOH HOH . E 4 HOH A 17 555 555 HOH HOH . E 4 HOH A 18 556 556 HOH HOH . E 4 HOH A 19 557 557 HOH HOH . E 4 HOH A 20 558 558 HOH HOH . E 4 HOH A 21 559 559 HOH HOH . E 4 HOH A 22 560 560 HOH HOH . E 4 HOH A 23 561 561 HOH HOH . E 4 HOH A 24 562 562 HOH HOH . E 4 HOH A 25 563 563 HOH HOH . E 4 HOH A 26 564 564 HOH HOH . E 4 HOH A 27 565 565 HOH HOH . E 4 HOH A 28 566 566 HOH HOH . E 4 HOH A 29 567 567 HOH HOH . E 4 HOH A 30 568 568 HOH HOH . E 4 HOH A 31 569 569 HOH HOH . E 4 HOH A 32 570 570 HOH HOH . E 4 HOH A 33 571 571 HOH HOH . E 4 HOH A 34 572 572 HOH HOH . E 4 HOH A 35 573 573 HOH HOH . E 4 HOH A 36 574 574 HOH HOH . E 4 HOH A 37 575 575 HOH HOH . E 4 HOH A 38 576 576 HOH HOH . E 4 HOH A 39 577 577 HOH HOH . E 4 HOH A 40 614 614 HOH HOH . E 4 HOH A 41 615 615 HOH HOH . E 4 HOH A 42 620 620 HOH HOH . E 4 HOH A 43 642 642 HOH HOH . E 4 HOH A 44 646 646 HOH HOH . E 4 HOH A 45 647 647 HOH HOH . E 4 HOH A 46 648 648 HOH HOH . E 4 HOH A 47 649 649 HOH HOH . E 4 HOH A 48 650 650 HOH HOH . E 4 HOH A 49 651 651 HOH HOH . E 4 HOH A 50 652 652 HOH HOH . E 4 HOH A 51 654 654 HOH HOH . E 4 HOH A 52 655 655 HOH HOH . E 4 HOH A 53 656 656 HOH HOH . E 4 HOH A 54 657 657 HOH HOH . E 4 HOH A 55 658 658 HOH HOH . E 4 HOH A 56 659 659 HOH HOH . E 4 HOH A 57 660 660 HOH HOH . E 4 HOH A 58 661 661 HOH HOH . E 4 HOH A 59 663 663 HOH HOH . E 4 HOH A 60 664 664 HOH HOH . E 4 HOH A 61 668 668 HOH HOH . E 4 HOH A 62 669 669 HOH HOH . E 4 HOH A 63 670 670 HOH HOH . E 4 HOH A 64 671 671 HOH HOH . E 4 HOH A 65 672 672 HOH HOH . E 4 HOH A 66 673 673 HOH HOH . E 4 HOH A 67 674 674 HOH HOH . E 4 HOH A 68 675 675 HOH HOH . E 4 HOH A 69 677 677 HOH HOH . E 4 HOH A 70 678 678 HOH HOH . E 4 HOH A 71 679 679 HOH HOH . E 4 HOH A 72 681 681 HOH HOH . E 4 HOH A 73 682 682 HOH HOH . E 4 HOH A 74 686 686 HOH HOH . E 4 HOH A 75 691 691 HOH HOH . E 4 HOH A 76 707 707 HOH HOH . E 4 HOH A 77 708 708 HOH HOH . E 4 HOH A 78 709 709 HOH HOH . E 4 HOH A 79 710 710 HOH HOH . E 4 HOH A 80 711 711 HOH HOH . E 4 HOH A 81 712 712 HOH HOH . E 4 HOH A 82 714 714 HOH HOH . E 4 HOH A 83 716 716 HOH HOH . E 4 HOH A 84 717 717 HOH HOH . E 4 HOH A 85 718 718 HOH HOH . E 4 HOH A 86 720 720 HOH HOH . E 4 HOH A 87 744 744 HOH HOH . E 4 HOH A 88 745 745 HOH HOH . E 4 HOH A 89 746 746 HOH HOH . E 4 HOH A 90 747 747 HOH HOH . E 4 HOH A 91 748 748 HOH HOH . E 4 HOH A 92 749 749 HOH HOH . E 4 HOH A 93 750 750 HOH HOH . E 4 HOH A 94 754 754 HOH HOH . E 4 HOH A 95 755 755 HOH HOH . E 4 HOH A 96 756 756 HOH HOH . E 4 HOH A 97 758 758 HOH HOH . E 4 HOH A 98 760 760 HOH HOH . E 4 HOH A 99 761 761 HOH HOH . E 4 HOH A 100 763 763 HOH HOH . E 4 HOH A 101 766 766 HOH HOH . E 4 HOH A 102 767 767 HOH HOH . E 4 HOH A 103 769 769 HOH HOH . E 4 HOH A 104 771 771 HOH HOH . E 4 HOH A 105 772 772 HOH HOH . E 4 HOH A 106 773 773 HOH HOH . E 4 HOH A 107 776 776 HOH HOH . E 4 HOH A 108 781 781 HOH HOH . E 4 HOH A 109 783 783 HOH HOH . E 4 HOH A 110 804 804 HOH HOH . E 4 HOH A 111 805 805 HOH HOH . E 4 HOH A 112 806 806 HOH HOH . E 4 HOH A 113 807 807 HOH HOH . E 4 HOH A 114 808 808 HOH HOH . E 4 HOH A 115 809 809 HOH HOH . E 4 HOH A 116 810 810 HOH HOH . E 4 HOH A 117 813 813 HOH HOH . E 4 HOH A 118 814 814 HOH HOH . F 4 HOH B 1 501 501 HOH HOH . F 4 HOH B 2 502 502 HOH HOH . F 4 HOH B 3 503 503 HOH HOH . F 4 HOH B 4 504 504 HOH HOH . F 4 HOH B 5 505 505 HOH HOH . F 4 HOH B 6 506 506 HOH HOH . F 4 HOH B 7 508 508 HOH HOH . F 4 HOH B 8 510 510 HOH HOH . F 4 HOH B 9 511 511 HOH HOH . F 4 HOH B 10 512 512 HOH HOH . F 4 HOH B 11 513 513 HOH HOH . F 4 HOH B 12 514 514 HOH HOH . F 4 HOH B 13 515 515 HOH HOH . F 4 HOH B 14 516 516 HOH HOH . F 4 HOH B 15 518 518 HOH HOH . F 4 HOH B 16 519 519 HOH HOH . F 4 HOH B 17 521 521 HOH HOH . F 4 HOH B 18 522 522 HOH HOH . F 4 HOH B 19 523 523 HOH HOH . F 4 HOH B 20 524 524 HOH HOH . F 4 HOH B 21 525 525 HOH HOH . F 4 HOH B 22 526 526 HOH HOH . F 4 HOH B 23 527 527 HOH HOH . F 4 HOH B 24 529 529 HOH HOH . F 4 HOH B 25 530 530 HOH HOH . F 4 HOH B 26 531 531 HOH HOH . F 4 HOH B 27 533 533 HOH HOH . F 4 HOH B 28 535 535 HOH HOH . F 4 HOH B 29 536 536 HOH HOH . F 4 HOH B 30 537 537 HOH HOH . F 4 HOH B 31 539 539 HOH HOH . F 4 HOH B 32 540 540 HOH HOH . F 4 HOH B 33 578 578 HOH HOH . F 4 HOH B 34 579 579 HOH HOH . F 4 HOH B 35 580 580 HOH HOH . F 4 HOH B 36 581 581 HOH HOH . F 4 HOH B 37 582 582 HOH HOH . F 4 HOH B 38 583 583 HOH HOH . F 4 HOH B 39 585 585 HOH HOH . F 4 HOH B 40 586 586 HOH HOH . F 4 HOH B 41 588 588 HOH HOH . F 4 HOH B 42 589 589 HOH HOH . F 4 HOH B 43 590 590 HOH HOH . F 4 HOH B 44 591 591 HOH HOH . F 4 HOH B 45 592 592 HOH HOH . F 4 HOH B 46 594 594 HOH HOH . F 4 HOH B 47 595 595 HOH HOH . F 4 HOH B 48 596 596 HOH HOH . F 4 HOH B 49 597 597 HOH HOH . F 4 HOH B 50 598 598 HOH HOH . F 4 HOH B 51 599 599 HOH HOH . F 4 HOH B 52 601 601 HOH HOH . F 4 HOH B 53 603 603 HOH HOH . F 4 HOH B 54 604 604 HOH HOH . F 4 HOH B 55 607 607 HOH HOH . F 4 HOH B 56 608 608 HOH HOH . F 4 HOH B 57 609 609 HOH HOH . F 4 HOH B 58 611 611 HOH HOH . F 4 HOH B 59 612 612 HOH HOH . F 4 HOH B 60 616 616 HOH HOH . F 4 HOH B 61 617 617 HOH HOH . F 4 HOH B 62 618 618 HOH HOH . F 4 HOH B 63 619 619 HOH HOH . F 4 HOH B 64 621 621 HOH HOH . F 4 HOH B 65 623 623 HOH HOH . F 4 HOH B 66 624 624 HOH HOH . F 4 HOH B 67 625 625 HOH HOH . F 4 HOH B 68 626 626 HOH HOH . F 4 HOH B 69 628 628 HOH HOH . F 4 HOH B 70 631 631 HOH HOH . F 4 HOH B 71 632 632 HOH HOH . F 4 HOH B 72 633 633 HOH HOH . F 4 HOH B 73 637 637 HOH HOH . F 4 HOH B 74 638 638 HOH HOH . F 4 HOH B 75 640 640 HOH HOH . F 4 HOH B 76 685 685 HOH HOH . F 4 HOH B 77 696 696 HOH HOH . F 4 HOH B 78 697 697 HOH HOH . F 4 HOH B 79 698 698 HOH HOH . F 4 HOH B 80 700 700 HOH HOH . F 4 HOH B 81 701 701 HOH HOH . F 4 HOH B 82 704 704 HOH HOH . F 4 HOH B 83 706 706 HOH HOH . F 4 HOH B 84 721 721 HOH HOH . F 4 HOH B 85 722 722 HOH HOH . F 4 HOH B 86 724 724 HOH HOH . F 4 HOH B 87 726 726 HOH HOH . F 4 HOH B 88 728 728 HOH HOH . F 4 HOH B 89 731 731 HOH HOH . F 4 HOH B 90 733 733 HOH HOH . F 4 HOH B 91 734 734 HOH HOH . F 4 HOH B 92 735 735 HOH HOH . F 4 HOH B 93 737 737 HOH HOH . F 4 HOH B 94 738 738 HOH HOH . F 4 HOH B 95 739 739 HOH HOH . F 4 HOH B 96 741 741 HOH HOH . F 4 HOH B 97 742 742 HOH HOH . F 4 HOH B 98 743 743 HOH HOH . F 4 HOH B 99 774 774 HOH HOH . F 4 HOH B 100 787 787 HOH HOH . F 4 HOH B 101 788 788 HOH HOH . F 4 HOH B 102 789 789 HOH HOH . F 4 HOH B 103 790 790 HOH HOH . F 4 HOH B 104 797 797 HOH HOH . F 4 HOH B 105 798 798 HOH HOH . F 4 HOH B 106 799 799 HOH HOH . F 4 HOH B 107 801 801 HOH HOH . F 4 HOH B 108 802 802 HOH HOH . F 4 HOH B 109 812 812 HOH HOH . F 4 HOH B 110 815 815 HOH HOH . F 4 HOH B 111 816 816 HOH HOH . F 4 HOH B 112 817 817 HOH HOH . F 4 HOH B 113 818 818 HOH HOH . F 4 HOH B 114 819 819 HOH HOH . F 4 HOH B 115 821 821 HOH HOH . F 4 HOH B 116 822 822 HOH HOH . F 4 HOH B 117 823 823 HOH HOH . F 4 HOH B 118 828 828 HOH HOH . F 4 HOH B 119 830 830 HOH HOH . F 4 HOH B 120 831 831 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . D 3 95.037 40.881 9.71 1 58.52 ? C BEZ 402 B 1 HETATM 2 O O1 BEZ . . . D 3 95.445 42.011 10.061 1 61.53 ? O1 BEZ 402 B 1 HETATM 3 O O2 BEZ . . . D 3 94.493 40.084 10.509 1 61.49 ? O2 BEZ 402 B 1 HETATM 4 C C1 BEZ . . . D 3 95.207 40.489 8.38 1 55.18 ? C1 BEZ 402 B 1 HETATM 5 C C2 BEZ . . . D 3 95.899 41.3 7.476 1 52.34 ? C2 BEZ 402 B 1 HETATM 6 C C3 BEZ . . . D 3 96.069 40.911 6.147 1 51.48 ? C3 BEZ 402 B 1 HETATM 7 C C4 BEZ . . . D 3 95.544 39.698 5.705 1 50.46 ? C4 BEZ 402 B 1 HETATM 8 C C5 BEZ . . . D 3 94.853 38.879 6.593 1 50 ? C5 BEZ 402 B 1 HETATM 9 C C6 BEZ . . . D 3 94.688 39.276 7.92 1 51.51 ? C6 BEZ 402 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #