data_1REF # _model_server_result.job_id jUA-t1nChih2jKjjvlwUKw _model_server_result.datetime_utc '2025-03-06 01:09:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ref # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 1REF # _exptl.entry_id 1REF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.28 _cell.angle_gamma 90 _cell.entry_id 1REF _cell.length_a 82.34 _cell.length_b 60.88 _cell.length_c 37.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1REF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C PCA 1 B PCA 1 1_555 B N THR 2 B THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 70 n n C O2 BEZ sing 71 n n C C1 BEZ sing 72 n n O2 HO2 BEZ sing 73 n n C1 C2 BEZ doub 74 n y C1 C6 BEZ sing 75 n y C2 C3 BEZ sing 76 n y C2 H2 BEZ sing 77 n n C3 C4 BEZ doub 78 n y C3 H3 BEZ sing 79 n n C4 C5 BEZ sing 80 n y C4 H4 BEZ sing 81 n n C5 C6 BEZ doub 82 n y C5 H5 BEZ sing 83 n n C6 H6 BEZ sing 84 n n # _atom_sites.entry_id 1REF _atom_sites.fract_transf_matrix[1][1] 0.012145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000909 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BEZ B 1 402 402 BEZ BEZ . D 3 C3X B 1 401 401 C3X C3X . E 4 HOH A 1 500 500 HOH HOH . E 4 HOH A 2 501 501 HOH HOH . E 4 HOH A 3 502 502 HOH HOH . E 4 HOH A 4 504 504 HOH HOH . E 4 HOH A 5 505 505 HOH HOH . E 4 HOH A 6 506 506 HOH HOH . E 4 HOH A 7 507 507 HOH HOH . E 4 HOH A 8 508 508 HOH HOH . E 4 HOH A 9 509 509 HOH HOH . E 4 HOH A 10 510 510 HOH HOH . E 4 HOH A 11 511 511 HOH HOH . E 4 HOH A 12 512 512 HOH HOH . E 4 HOH A 13 513 513 HOH HOH . E 4 HOH A 14 514 514 HOH HOH . E 4 HOH A 15 515 515 HOH HOH . E 4 HOH A 16 516 516 HOH HOH . E 4 HOH A 17 517 517 HOH HOH . E 4 HOH A 18 518 518 HOH HOH . E 4 HOH A 19 519 519 HOH HOH . E 4 HOH A 20 520 520 HOH HOH . E 4 HOH A 21 521 521 HOH HOH . E 4 HOH A 22 522 522 HOH HOH . E 4 HOH A 23 523 523 HOH HOH . E 4 HOH A 24 524 524 HOH HOH . E 4 HOH A 25 525 525 HOH HOH . E 4 HOH A 26 526 526 HOH HOH . E 4 HOH A 27 527 527 HOH HOH . E 4 HOH A 28 528 528 HOH HOH . E 4 HOH A 29 529 529 HOH HOH . E 4 HOH A 30 530 530 HOH HOH . E 4 HOH A 31 531 531 HOH HOH . E 4 HOH A 32 532 532 HOH HOH . E 4 HOH A 33 533 533 HOH HOH . E 4 HOH A 34 534 534 HOH HOH . E 4 HOH A 35 535 535 HOH HOH . E 4 HOH A 36 566 566 HOH HOH . E 4 HOH A 37 567 567 HOH HOH . E 4 HOH A 38 568 568 HOH HOH . E 4 HOH A 39 569 569 HOH HOH . E 4 HOH A 40 570 570 HOH HOH . E 4 HOH A 41 571 571 HOH HOH . E 4 HOH A 42 572 572 HOH HOH . E 4 HOH A 43 573 573 HOH HOH . E 4 HOH A 44 574 574 HOH HOH . E 4 HOH A 45 575 575 HOH HOH . E 4 HOH A 46 576 576 HOH HOH . E 4 HOH A 47 577 577 HOH HOH . E 4 HOH A 48 578 578 HOH HOH . E 4 HOH A 49 579 579 HOH HOH . E 4 HOH A 50 580 580 HOH HOH . E 4 HOH A 51 581 581 HOH HOH . E 4 HOH A 52 582 582 HOH HOH . E 4 HOH A 53 583 583 HOH HOH . E 4 HOH A 54 584 584 HOH HOH . E 4 HOH A 55 586 586 HOH HOH . E 4 HOH A 56 587 587 HOH HOH . E 4 HOH A 57 588 588 HOH HOH . E 4 HOH A 58 589 589 HOH HOH . E 4 HOH A 59 590 590 HOH HOH . E 4 HOH A 60 591 591 HOH HOH . E 4 HOH A 61 592 592 HOH HOH . E 4 HOH A 62 594 594 HOH HOH . E 4 HOH A 63 595 595 HOH HOH . E 4 HOH A 64 596 596 HOH HOH . E 4 HOH A 65 597 597 HOH HOH . E 4 HOH A 66 598 598 HOH HOH . E 4 HOH A 67 599 599 HOH HOH . E 4 HOH A 68 600 600 HOH HOH . E 4 HOH A 69 601 601 HOH HOH . E 4 HOH A 70 602 602 HOH HOH . E 4 HOH A 71 604 604 HOH HOH . E 4 HOH A 72 625 625 HOH HOH . E 4 HOH A 73 629 629 HOH HOH . E 4 HOH A 74 630 630 HOH HOH . E 4 HOH A 75 632 632 HOH HOH . E 4 HOH A 76 633 633 HOH HOH . E 4 HOH A 77 635 635 HOH HOH . E 4 HOH A 78 636 636 HOH HOH . E 4 HOH A 79 637 637 HOH HOH . E 4 HOH A 80 638 638 HOH HOH . E 4 HOH A 81 639 639 HOH HOH . E 4 HOH A 82 640 640 HOH HOH . E 4 HOH A 83 641 641 HOH HOH . E 4 HOH A 84 642 642 HOH HOH . E 4 HOH A 85 643 643 HOH HOH . E 4 HOH A 86 644 644 HOH HOH . E 4 HOH A 87 646 646 HOH HOH . E 4 HOH A 88 647 647 HOH HOH . E 4 HOH A 89 648 648 HOH HOH . E 4 HOH A 90 649 649 HOH HOH . E 4 HOH A 91 650 650 HOH HOH . E 4 HOH A 92 651 651 HOH HOH . E 4 HOH A 93 652 652 HOH HOH . E 4 HOH A 94 653 653 HOH HOH . E 4 HOH A 95 655 655 HOH HOH . E 4 HOH A 96 656 656 HOH HOH . E 4 HOH A 97 657 657 HOH HOH . E 4 HOH A 98 658 658 HOH HOH . E 4 HOH A 99 659 659 HOH HOH . E 4 HOH A 100 660 660 HOH HOH . E 4 HOH A 101 661 661 HOH HOH . E 4 HOH A 102 662 662 HOH HOH . E 4 HOH A 103 663 663 HOH HOH . E 4 HOH A 104 683 683 HOH HOH . E 4 HOH A 105 684 684 HOH HOH . E 4 HOH A 106 685 685 HOH HOH . E 4 HOH A 107 686 686 HOH HOH . E 4 HOH A 108 687 687 HOH HOH . E 4 HOH A 109 688 688 HOH HOH . E 4 HOH A 110 689 689 HOH HOH . E 4 HOH A 111 690 690 HOH HOH . E 4 HOH A 112 691 691 HOH HOH . E 4 HOH A 113 694 694 HOH HOH . E 4 HOH A 114 696 696 HOH HOH . E 4 HOH A 115 697 697 HOH HOH . E 4 HOH A 116 698 698 HOH HOH . E 4 HOH A 117 699 699 HOH HOH . E 4 HOH A 118 700 700 HOH HOH . E 4 HOH A 119 714 714 HOH HOH . E 4 HOH A 120 716 716 HOH HOH . E 4 HOH A 121 717 717 HOH HOH . E 4 HOH A 122 718 718 HOH HOH . E 4 HOH A 123 719 719 HOH HOH . E 4 HOH A 124 720 720 HOH HOH . E 4 HOH A 125 721 721 HOH HOH . E 4 HOH A 126 722 722 HOH HOH . E 4 HOH A 127 742 742 HOH HOH . E 4 HOH A 128 743 743 HOH HOH . E 4 HOH A 129 744 744 HOH HOH . E 4 HOH A 130 745 745 HOH HOH . E 4 HOH A 131 746 746 HOH HOH . E 4 HOH A 132 747 747 HOH HOH . E 4 HOH A 133 748 748 HOH HOH . E 4 HOH A 134 749 749 HOH HOH . E 4 HOH A 135 765 765 HOH HOH . E 4 HOH A 136 766 766 HOH HOH . E 4 HOH A 137 768 768 HOH HOH . E 4 HOH A 138 769 769 HOH HOH . F 4 HOH B 1 503 503 HOH HOH . F 4 HOH B 2 536 536 HOH HOH . F 4 HOH B 3 537 537 HOH HOH . F 4 HOH B 4 538 538 HOH HOH . F 4 HOH B 5 539 539 HOH HOH . F 4 HOH B 6 540 540 HOH HOH . F 4 HOH B 7 541 541 HOH HOH . F 4 HOH B 8 542 542 HOH HOH . F 4 HOH B 9 543 543 HOH HOH . F 4 HOH B 10 544 544 HOH HOH . F 4 HOH B 11 545 545 HOH HOH . F 4 HOH B 12 546 546 HOH HOH . F 4 HOH B 13 547 547 HOH HOH . F 4 HOH B 14 548 548 HOH HOH . F 4 HOH B 15 549 549 HOH HOH . F 4 HOH B 16 550 550 HOH HOH . F 4 HOH B 17 551 551 HOH HOH . F 4 HOH B 18 552 552 HOH HOH . F 4 HOH B 19 553 553 HOH HOH . F 4 HOH B 20 554 554 HOH HOH . F 4 HOH B 21 555 555 HOH HOH . F 4 HOH B 22 556 556 HOH HOH . F 4 HOH B 23 557 557 HOH HOH . F 4 HOH B 24 558 558 HOH HOH . F 4 HOH B 25 559 559 HOH HOH . F 4 HOH B 26 560 560 HOH HOH . F 4 HOH B 27 561 561 HOH HOH . F 4 HOH B 28 562 562 HOH HOH . F 4 HOH B 29 563 563 HOH HOH . F 4 HOH B 30 564 564 HOH HOH . F 4 HOH B 31 565 565 HOH HOH . F 4 HOH B 32 605 605 HOH HOH . F 4 HOH B 33 607 607 HOH HOH . F 4 HOH B 34 608 608 HOH HOH . F 4 HOH B 35 609 609 HOH HOH . F 4 HOH B 36 610 610 HOH HOH . F 4 HOH B 37 611 611 HOH HOH . F 4 HOH B 38 612 612 HOH HOH . F 4 HOH B 39 613 613 HOH HOH . F 4 HOH B 40 614 614 HOH HOH . F 4 HOH B 41 615 615 HOH HOH . F 4 HOH B 42 616 616 HOH HOH . F 4 HOH B 43 617 617 HOH HOH . F 4 HOH B 44 618 618 HOH HOH . F 4 HOH B 45 619 619 HOH HOH . F 4 HOH B 46 620 620 HOH HOH . F 4 HOH B 47 622 622 HOH HOH . F 4 HOH B 48 623 623 HOH HOH . F 4 HOH B 49 624 624 HOH HOH . F 4 HOH B 50 626 626 HOH HOH . F 4 HOH B 51 627 627 HOH HOH . F 4 HOH B 52 628 628 HOH HOH . F 4 HOH B 53 631 631 HOH HOH . F 4 HOH B 54 634 634 HOH HOH . F 4 HOH B 55 666 666 HOH HOH . F 4 HOH B 56 667 667 HOH HOH . F 4 HOH B 57 668 668 HOH HOH . F 4 HOH B 58 669 669 HOH HOH . F 4 HOH B 59 670 670 HOH HOH . F 4 HOH B 60 671 671 HOH HOH . F 4 HOH B 61 672 672 HOH HOH . F 4 HOH B 62 673 673 HOH HOH . F 4 HOH B 63 674 674 HOH HOH . F 4 HOH B 64 675 675 HOH HOH . F 4 HOH B 65 676 676 HOH HOH . F 4 HOH B 66 677 677 HOH HOH . F 4 HOH B 67 678 678 HOH HOH . F 4 HOH B 68 679 679 HOH HOH . F 4 HOH B 69 680 680 HOH HOH . F 4 HOH B 70 681 681 HOH HOH . F 4 HOH B 71 682 682 HOH HOH . F 4 HOH B 72 701 701 HOH HOH . F 4 HOH B 73 702 702 HOH HOH . F 4 HOH B 74 703 703 HOH HOH . F 4 HOH B 75 704 704 HOH HOH . F 4 HOH B 76 706 706 HOH HOH . F 4 HOH B 77 707 707 HOH HOH . F 4 HOH B 78 708 708 HOH HOH . F 4 HOH B 79 709 709 HOH HOH . F 4 HOH B 80 711 711 HOH HOH . F 4 HOH B 81 712 712 HOH HOH . F 4 HOH B 82 713 713 HOH HOH . F 4 HOH B 83 724 724 HOH HOH . F 4 HOH B 84 725 725 HOH HOH . F 4 HOH B 85 726 726 HOH HOH . F 4 HOH B 86 727 727 HOH HOH . F 4 HOH B 87 728 728 HOH HOH . F 4 HOH B 88 730 730 HOH HOH . F 4 HOH B 89 731 731 HOH HOH . F 4 HOH B 90 733 733 HOH HOH . F 4 HOH B 91 734 734 HOH HOH . F 4 HOH B 92 735 735 HOH HOH . F 4 HOH B 93 736 736 HOH HOH . F 4 HOH B 94 738 738 HOH HOH . F 4 HOH B 95 739 739 HOH HOH . F 4 HOH B 96 750 750 HOH HOH . F 4 HOH B 97 751 751 HOH HOH . F 4 HOH B 98 752 752 HOH HOH . F 4 HOH B 99 753 753 HOH HOH . F 4 HOH B 100 754 754 HOH HOH . F 4 HOH B 101 756 756 HOH HOH . F 4 HOH B 102 757 757 HOH HOH . F 4 HOH B 103 758 758 HOH HOH . F 4 HOH B 104 760 760 HOH HOH . F 4 HOH B 105 761 761 HOH HOH . F 4 HOH B 106 762 762 HOH HOH . F 4 HOH B 107 763 763 HOH HOH . F 4 HOH B 108 764 764 HOH HOH . F 4 HOH B 109 770 770 HOH HOH . F 4 HOH B 110 771 771 HOH HOH . F 4 HOH B 111 772 772 HOH HOH . F 4 HOH B 112 773 773 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . C 2 95.067 40.106 9.557 1 51.31 ? C BEZ 402 B 1 HETATM 2 O O1 BEZ . . . C 2 95.359 41.214 10.062 1 53.98 ? O1 BEZ 402 B 1 HETATM 3 O O2 BEZ . . . C 2 94.495 39.196 10.203 1 49.6 ? O2 BEZ 402 B 1 HETATM 4 C C1 BEZ . . . C 2 95.392 39.877 8.22 1 50.27 ? C1 BEZ 402 B 1 HETATM 5 C C2 BEZ . . . C 2 96.025 40.864 7.459 1 51.16 ? C2 BEZ 402 B 1 HETATM 6 C C3 BEZ . . . C 2 96.337 40.645 6.115 1 49.09 ? C3 BEZ 402 B 1 HETATM 7 C C4 BEZ . . . C 2 96.016 39.429 5.52 1 46.17 ? C4 BEZ 402 B 1 HETATM 8 C C5 BEZ . . . C 2 95.388 38.437 6.266 1 42.19 ? C5 BEZ 402 B 1 HETATM 9 C C6 BEZ . . . C 2 95.08 38.663 7.604 1 45.88 ? C6 BEZ 402 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #