data_1REY # _model_server_result.job_id gYBzSbuFiZm1xUHHYBFOqA _model_server_result.datetime_utc '2024-11-13 00:33:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":133}' # _entry.id 1REY # _exptl.entry_id 1REY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1REY _cell.length_a 58.63 _cell.length_b 60.76 _cell.length_c 33.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1REY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 132 NAG 2 n B NAG 2 B 2 NAG ? 131 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 65 A CYS 65 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 77 A CYS 77 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A OD2 ASP 53 A ASP 53 1_555 C C1 GOL . A GOL 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale2 C O3 GOL . A GOL 133 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 1REY _atom_sites.fract_transf_matrix[1][1] 0.017056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 133 133 GOL GOL . D 4 HOH A 1 134 1 HOH HOH . D 4 HOH A 2 135 2 HOH HOH . D 4 HOH A 3 136 3 HOH HOH . D 4 HOH A 4 137 4 HOH HOH . D 4 HOH A 5 138 5 HOH HOH . D 4 HOH A 6 139 6 HOH HOH . D 4 HOH A 7 140 7 HOH HOH . D 4 HOH A 8 141 8 HOH HOH . D 4 HOH A 9 142 9 HOH HOH . D 4 HOH A 10 143 10 HOH HOH . D 4 HOH A 11 144 11 HOH HOH . D 4 HOH A 12 145 12 HOH HOH . D 4 HOH A 13 146 13 HOH HOH . D 4 HOH A 14 147 14 HOH HOH . D 4 HOH A 15 148 15 HOH HOH . D 4 HOH A 16 149 16 HOH HOH . D 4 HOH A 17 150 17 HOH HOH . D 4 HOH A 18 151 18 HOH HOH . D 4 HOH A 19 152 19 HOH HOH . D 4 HOH A 20 153 20 HOH HOH . D 4 HOH A 21 154 21 HOH HOH . D 4 HOH A 22 155 22 HOH HOH . D 4 HOH A 23 156 23 HOH HOH . D 4 HOH A 24 157 24 HOH HOH . D 4 HOH A 25 158 25 HOH HOH . D 4 HOH A 26 159 26 HOH HOH . D 4 HOH A 27 160 27 HOH HOH . D 4 HOH A 28 161 28 HOH HOH . D 4 HOH A 29 162 29 HOH HOH . D 4 HOH A 30 163 30 HOH HOH . D 4 HOH A 31 164 31 HOH HOH . D 4 HOH A 32 165 32 HOH HOH . D 4 HOH A 33 166 33 HOH HOH . D 4 HOH A 34 167 34 HOH HOH . D 4 HOH A 35 168 35 HOH HOH . D 4 HOH A 36 169 36 HOH HOH . D 4 HOH A 37 170 37 HOH HOH . D 4 HOH A 38 171 38 HOH HOH . D 4 HOH A 39 172 39 HOH HOH . D 4 HOH A 40 173 40 HOH HOH . D 4 HOH A 41 174 41 HOH HOH . D 4 HOH A 42 175 42 HOH HOH . D 4 HOH A 43 176 43 HOH HOH . D 4 HOH A 44 177 44 HOH HOH . D 4 HOH A 45 178 45 HOH HOH . D 4 HOH A 46 179 46 HOH HOH . D 4 HOH A 47 180 47 HOH HOH . D 4 HOH A 48 181 48 HOH HOH . D 4 HOH A 49 182 49 HOH HOH . D 4 HOH A 50 183 50 HOH HOH . D 4 HOH A 51 184 51 HOH HOH . D 4 HOH A 52 185 52 HOH HOH . D 4 HOH A 53 186 53 HOH HOH . D 4 HOH A 54 187 54 HOH HOH . D 4 HOH A 55 188 55 HOH HOH . D 4 HOH A 56 189 56 HOH HOH . D 4 HOH A 57 190 57 HOH HOH . D 4 HOH A 58 191 58 HOH HOH . D 4 HOH A 59 192 59 HOH HOH . D 4 HOH A 60 193 60 HOH HOH . D 4 HOH A 61 194 61 HOH HOH . D 4 HOH A 62 195 62 HOH HOH . D 4 HOH A 63 196 63 HOH HOH . D 4 HOH A 64 197 64 HOH HOH . D 4 HOH A 65 198 65 HOH HOH . D 4 HOH A 66 199 66 HOH HOH . D 4 HOH A 67 200 67 HOH HOH . D 4 HOH A 68 201 68 HOH HOH . D 4 HOH A 69 202 69 HOH HOH . D 4 HOH A 70 203 70 HOH HOH . D 4 HOH A 71 204 71 HOH HOH . D 4 HOH A 72 205 72 HOH HOH . D 4 HOH A 73 206 73 HOH HOH . D 4 HOH A 74 207 74 HOH HOH . D 4 HOH A 75 208 75 HOH HOH . D 4 HOH A 76 209 76 HOH HOH . D 4 HOH A 77 210 77 HOH HOH . D 4 HOH A 78 211 78 HOH HOH . D 4 HOH A 79 212 79 HOH HOH . D 4 HOH A 80 213 80 HOH HOH . D 4 HOH A 81 214 81 HOH HOH . D 4 HOH A 82 215 82 HOH HOH . D 4 HOH A 83 216 83 HOH HOH . D 4 HOH A 84 217 84 HOH HOH . D 4 HOH A 85 218 85 HOH HOH . D 4 HOH A 86 219 86 HOH HOH . D 4 HOH A 87 220 87 HOH HOH . D 4 HOH A 88 221 88 HOH HOH . D 4 HOH A 89 222 89 HOH HOH . D 4 HOH A 90 223 90 HOH HOH . D 4 HOH A 91 224 91 HOH HOH . D 4 HOH A 92 225 92 HOH HOH . D 4 HOH A 93 226 93 HOH HOH . D 4 HOH A 94 227 94 HOH HOH . D 4 HOH A 95 228 95 HOH HOH . D 4 HOH A 96 229 96 HOH HOH . D 4 HOH A 97 230 97 HOH HOH . D 4 HOH A 98 231 98 HOH HOH . D 4 HOH A 99 232 99 HOH HOH . D 4 HOH A 100 233 100 HOH HOH . D 4 HOH A 101 234 101 HOH HOH . D 4 HOH A 102 235 102 HOH HOH . D 4 HOH A 103 236 103 HOH HOH . D 4 HOH A 104 237 104 HOH HOH . D 4 HOH A 105 238 105 HOH HOH . D 4 HOH A 106 239 106 HOH HOH . D 4 HOH A 107 240 107 HOH HOH . D 4 HOH A 108 241 108 HOH HOH . D 4 HOH A 109 242 109 HOH HOH . D 4 HOH A 110 243 110 HOH HOH . D 4 HOH A 111 244 111 HOH HOH . D 4 HOH A 112 245 112 HOH HOH . D 4 HOH A 113 246 113 HOH HOH . D 4 HOH A 114 247 114 HOH HOH . D 4 HOH A 115 248 115 HOH HOH . D 4 HOH A 116 249 116 HOH HOH . D 4 HOH A 117 250 117 HOH HOH . D 4 HOH A 118 251 118 HOH HOH . D 4 HOH A 119 252 119 HOH HOH . D 4 HOH A 120 253 120 HOH HOH . D 4 HOH A 121 254 121 HOH HOH . D 4 HOH A 122 255 122 HOH HOH . D 4 HOH A 123 256 123 HOH HOH . D 4 HOH A 124 257 124 HOH HOH . D 4 HOH A 125 258 125 HOH HOH . D 4 HOH A 126 259 126 HOH HOH . D 4 HOH A 127 260 127 HOH HOH . D 4 HOH A 128 261 128 HOH HOH . D 4 HOH A 129 262 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 11.609 5.774 29.387 1 20.9 ? C1 GOL 133 A 1 HETATM 2 C C2 GOL . . . C 3 11.725 4.272 29.691 1 21.4 ? C2 GOL 133 A 1 HETATM 3 O O2 GOL . . . C 3 11.75 3.521 28.483 1 27.1 ? O2 GOL 133 A 1 HETATM 4 C C3 GOL . . . C 3 12.999 4.039 30.462 1 20.7 ? C3 GOL 133 A 1 HETATM 5 O O3 GOL . . . C 3 12.995 4.89 31.615 1 19.42 ? O3 GOL 133 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #