data_1REY # _model_server_result.job_id dB-MvPedZr0BNPyADBdiEw _model_server_result.datetime_utc '2024-12-28 08:24:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 1REY # _exptl.entry_id 1REY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1REY _cell.length_a 58.63 _cell.length_b 60.76 _cell.length_c 33.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1REY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 132 NAG 2 n B NAG 2 B 2 NAG ? 131 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 65 A CYS 65 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 77 A CYS 77 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 C O3 GOL . A GOL 201 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1REY _atom_sites.fract_transf_matrix[1][1] 0.017056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 201 133 GOL GOL . D 4 HOH A 1 301 86 HOH HOH . D 4 HOH A 2 302 95 HOH HOH . D 4 HOH A 3 303 21 HOH HOH . D 4 HOH A 4 304 42 HOH HOH . D 4 HOH A 5 305 12 HOH HOH . D 4 HOH A 6 306 25 HOH HOH . D 4 HOH A 7 307 6 HOH HOH . D 4 HOH A 8 308 2 HOH HOH . D 4 HOH A 9 309 87 HOH HOH . D 4 HOH A 10 310 20 HOH HOH . D 4 HOH A 11 311 74 HOH HOH . D 4 HOH A 12 312 29 HOH HOH . D 4 HOH A 13 313 76 HOH HOH . D 4 HOH A 14 314 45 HOH HOH . D 4 HOH A 15 315 43 HOH HOH . D 4 HOH A 16 316 13 HOH HOH . D 4 HOH A 17 317 82 HOH HOH . D 4 HOH A 18 318 7 HOH HOH . D 4 HOH A 19 319 91 HOH HOH . D 4 HOH A 20 320 63 HOH HOH . D 4 HOH A 21 321 19 HOH HOH . D 4 HOH A 22 322 31 HOH HOH . D 4 HOH A 23 323 94 HOH HOH . D 4 HOH A 24 324 79 HOH HOH . D 4 HOH A 25 325 8 HOH HOH . D 4 HOH A 26 326 26 HOH HOH . D 4 HOH A 27 327 24 HOH HOH . D 4 HOH A 28 328 17 HOH HOH . D 4 HOH A 29 329 1 HOH HOH . D 4 HOH A 30 330 48 HOH HOH . D 4 HOH A 31 331 53 HOH HOH . D 4 HOH A 32 332 100 HOH HOH . D 4 HOH A 33 333 47 HOH HOH . D 4 HOH A 34 334 10 HOH HOH . D 4 HOH A 35 335 110 HOH HOH . D 4 HOH A 36 336 11 HOH HOH . D 4 HOH A 37 337 33 HOH HOH . D 4 HOH A 38 338 83 HOH HOH . D 4 HOH A 39 339 5 HOH HOH . D 4 HOH A 40 340 51 HOH HOH . D 4 HOH A 41 341 14 HOH HOH . D 4 HOH A 42 342 49 HOH HOH . D 4 HOH A 43 343 32 HOH HOH . D 4 HOH A 44 344 3 HOH HOH . D 4 HOH A 45 345 125 HOH HOH . D 4 HOH A 46 346 96 HOH HOH . D 4 HOH A 47 347 113 HOH HOH . D 4 HOH A 48 348 112 HOH HOH . D 4 HOH A 49 349 68 HOH HOH . D 4 HOH A 50 350 116 HOH HOH . D 4 HOH A 51 351 9 HOH HOH . D 4 HOH A 52 352 71 HOH HOH . D 4 HOH A 53 353 54 HOH HOH . D 4 HOH A 54 354 44 HOH HOH . D 4 HOH A 55 355 61 HOH HOH . D 4 HOH A 56 356 57 HOH HOH . D 4 HOH A 57 357 129 HOH HOH . D 4 HOH A 58 358 67 HOH HOH . D 4 HOH A 59 359 65 HOH HOH . D 4 HOH A 60 360 35 HOH HOH . D 4 HOH A 61 361 46 HOH HOH . D 4 HOH A 62 362 120 HOH HOH . D 4 HOH A 63 363 18 HOH HOH . D 4 HOH A 64 364 115 HOH HOH . D 4 HOH A 65 365 64 HOH HOH . D 4 HOH A 66 366 73 HOH HOH . D 4 HOH A 67 367 128 HOH HOH . D 4 HOH A 68 368 85 HOH HOH . D 4 HOH A 69 369 52 HOH HOH . D 4 HOH A 70 370 75 HOH HOH . D 4 HOH A 71 371 59 HOH HOH . D 4 HOH A 72 372 23 HOH HOH . D 4 HOH A 73 373 72 HOH HOH . D 4 HOH A 74 374 34 HOH HOH . D 4 HOH A 75 375 117 HOH HOH . D 4 HOH A 76 376 121 HOH HOH . D 4 HOH A 77 377 98 HOH HOH . D 4 HOH A 78 378 22 HOH HOH . D 4 HOH A 79 379 107 HOH HOH . D 4 HOH A 80 380 103 HOH HOH . D 4 HOH A 81 381 16 HOH HOH . D 4 HOH A 82 382 30 HOH HOH . D 4 HOH A 83 383 93 HOH HOH . D 4 HOH A 84 384 15 HOH HOH . D 4 HOH A 85 385 111 HOH HOH . D 4 HOH A 86 386 62 HOH HOH . D 4 HOH A 87 387 88 HOH HOH . D 4 HOH A 88 388 123 HOH HOH . D 4 HOH A 89 389 102 HOH HOH . D 4 HOH A 90 390 104 HOH HOH . D 4 HOH A 91 391 66 HOH HOH . D 4 HOH A 92 392 118 HOH HOH . D 4 HOH A 93 393 60 HOH HOH . D 4 HOH A 94 394 4 HOH HOH . D 4 HOH A 95 395 80 HOH HOH . D 4 HOH A 96 396 124 HOH HOH . D 4 HOH A 97 397 27 HOH HOH . D 4 HOH A 98 398 84 HOH HOH . D 4 HOH A 99 399 41 HOH HOH . D 4 HOH A 100 400 90 HOH HOH . D 4 HOH A 101 401 39 HOH HOH . D 4 HOH A 102 402 70 HOH HOH . D 4 HOH A 103 403 99 HOH HOH . D 4 HOH A 104 404 127 HOH HOH . D 4 HOH A 105 405 58 HOH HOH . D 4 HOH A 106 406 114 HOH HOH . D 4 HOH A 107 407 81 HOH HOH . D 4 HOH A 108 408 89 HOH HOH . D 4 HOH A 109 409 105 HOH HOH . D 4 HOH A 110 410 106 HOH HOH . D 4 HOH A 111 411 108 HOH HOH . D 4 HOH A 112 412 28 HOH HOH . D 4 HOH A 113 413 126 HOH HOH . D 4 HOH A 114 414 55 HOH HOH . D 4 HOH A 115 415 50 HOH HOH . D 4 HOH A 116 416 92 HOH HOH . D 4 HOH A 117 417 97 HOH HOH . D 4 HOH A 118 418 119 HOH HOH . D 4 HOH A 119 419 77 HOH HOH . D 4 HOH A 120 420 40 HOH HOH . D 4 HOH A 121 421 122 HOH HOH . D 4 HOH A 122 422 78 HOH HOH . D 4 HOH A 123 423 101 HOH HOH . D 4 HOH A 124 424 36 HOH HOH . D 4 HOH A 125 425 56 HOH HOH . D 4 HOH A 126 426 69 HOH HOH . D 4 HOH A 127 427 109 HOH HOH . D 4 HOH A 128 428 38 HOH HOH . D 4 HOH A 129 429 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 11.609 5.774 29.387 1 20.9 ? C1 GOL 201 A 1 HETATM 2 C C2 GOL . . . C 3 11.725 4.272 29.691 1 21.4 ? C2 GOL 201 A 1 HETATM 3 O O2 GOL . . . C 3 11.75 3.521 28.483 1 27.1 ? O2 GOL 201 A 1 HETATM 4 C C3 GOL . . . C 3 12.999 4.039 30.462 1 20.7 ? C3 GOL 201 A 1 HETATM 5 O O3 GOL . . . C 3 12.995 4.89 31.615 1 19.42 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #