data_1RF7
#
_model_server_result.job_id            2Xs7v5majkOj3jNaLtEx-A 
_model_server_result.datetime_utc      '2025-04-25 01:17:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rf7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":161}' 
#
_entry.id    1RF7 
#
_exptl.entry_id    1RF7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.413 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIHYDROFOLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RF7 
_cell.length_a            34.705 
_cell.length_b            38.917 
_cell.length_c            108.827 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RF7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 17 A GLU 17 4_475 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc2 A OD1 ASN 18 A ASN 18 4_475 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc3 A OD2 ASP 70 A ASP 70 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc4 C MN MN . A MN 300 1_555 F O HOH . A HOH 360 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc5 C MN MN . A MN 300 1_555 F O HOH . A HOH 377 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
#
_chem_comp.formula           'C19 H21 N7 O6' 
_chem_comp.formula_weight    443.413 
_chem_comp.id                DHF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIHYDROFOLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 DHF sing 83 n y 
N1 C8A DHF sing 84 n y 
N1 HN1 DHF sing 85 n n 
C2 NA2 DHF sing 86 n n 
C2 N3 DHF doub 87 n y 
NA2 HN21 DHF sing 88 n n 
NA2 HN22 DHF sing 89 n n 
N3 C4 DHF sing 90 n y 
C4 O4 DHF doub 91 n n 
C4 C4A DHF sing 92 n y 
C4A N5 DHF sing 93 n n 
C4A C8A DHF doub 94 n y 
N5 C6 DHF doub 95 n n 
C6 C7 DHF sing 96 n n 
C6 C9 DHF sing 97 n n 
C7 N8 DHF sing 98 n n 
C7 H71 DHF sing 99 n n 
C7 H72 DHF sing 100 n n 
N8 C8A DHF sing 101 n n 
N8 HN8 DHF sing 102 n n 
C9 N10 DHF sing 103 n n 
C9 H91 DHF sing 104 n n 
C9 H92 DHF sing 105 n n 
N10 C14 DHF sing 106 n n 
N10 HN0 DHF sing 107 n n 
C11 C12 DHF doub 108 n y 
C11 C16 DHF sing 109 n y 
C11 C DHF sing 110 n n 
C12 C13 DHF sing 111 n y 
C12 H12 DHF sing 112 n n 
C13 C14 DHF doub 113 n y 
C13 H13 DHF sing 114 n n 
C14 C15 DHF sing 115 n y 
C15 C16 DHF doub 116 n y 
C15 H15 DHF sing 117 n n 
C16 H16 DHF sing 118 n n 
C O DHF doub 119 n n 
C N DHF sing 120 n n 
N CA DHF sing 121 n n 
N HN DHF sing 122 n n 
CA CB DHF sing 123 n n 
CA CT DHF sing 124 n n 
CA HA DHF sing 125 n n 
CB CG DHF sing 126 n n 
CB HB1 DHF sing 127 n n 
CB HB2 DHF sing 128 n n 
CG CD DHF sing 129 n n 
CG HG1 DHF sing 130 n n 
CG HG2 DHF sing 131 n n 
CD OE1 DHF doub 132 n n 
CD OE2 DHF sing 133 n n 
OE2 HOE2 DHF sing 134 n n 
CT O1 DHF doub 135 n n 
CT O2 DHF sing 136 n n 
O2 HO2 DHF sing 137 n n 
#
_atom_sites.entry_id                     1RF7 
_atom_sites.fract_transf_matrix[1][1]    0.028814 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025696 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009189 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 299 299 CL CL . 
C 3 MN A 1 300 300 MN MN . 
D 4 DHF A 1 161 161 DHF DHF . 
E 4 DHF A 1 163 163 DHF DHF . 
F 5 HOH A 1 301 301 HOH HOH . 
F 5 HOH A 2 302 302 HOH HOH . 
F 5 HOH A 3 303 303 HOH HOH . 
F 5 HOH A 4 304 304 HOH HOH . 
F 5 HOH A 5 305 305 HOH HOH . 
F 5 HOH A 6 306 306 HOH HOH . 
F 5 HOH A 7 307 307 HOH HOH . 
F 5 HOH A 8 308 308 HOH HOH . 
F 5 HOH A 9 309 309 HOH HOH . 
F 5 HOH A 10 311 311 HOH HOH . 
F 5 HOH A 11 312 312 HOH HOH . 
F 5 HOH A 12 313 313 HOH HOH . 
F 5 HOH A 13 314 314 HOH HOH . 
F 5 HOH A 14 315 315 HOH HOH . 
F 5 HOH A 15 316 316 HOH HOH . 
F 5 HOH A 16 317 317 HOH HOH . 
F 5 HOH A 17 318 318 HOH HOH . 
F 5 HOH A 18 319 319 HOH HOH . 
F 5 HOH A 19 320 320 HOH HOH . 
F 5 HOH A 20 321 321 HOH HOH . 
F 5 HOH A 21 322 322 HOH HOH . 
F 5 HOH A 22 323 323 HOH HOH . 
F 5 HOH A 23 324 324 HOH HOH . 
F 5 HOH A 24 325 325 HOH HOH . 
F 5 HOH A 25 326 326 HOH HOH . 
F 5 HOH A 26 327 327 HOH HOH . 
F 5 HOH A 27 328 328 HOH HOH . 
F 5 HOH A 28 329 329 HOH HOH . 
F 5 HOH A 29 330 330 HOH HOH . 
F 5 HOH A 30 331 331 HOH HOH . 
F 5 HOH A 31 332 332 HOH HOH . 
F 5 HOH A 32 333 333 HOH HOH . 
F 5 HOH A 33 334 334 HOH HOH . 
F 5 HOH A 34 335 335 HOH HOH . 
F 5 HOH A 35 336 336 HOH HOH . 
F 5 HOH A 36 337 337 HOH HOH . 
F 5 HOH A 37 338 338 HOH HOH . 
F 5 HOH A 38 339 339 HOH HOH . 
F 5 HOH A 39 340 340 HOH HOH . 
F 5 HOH A 40 341 341 HOH HOH . 
F 5 HOH A 41 342 342 HOH HOH . 
F 5 HOH A 42 343 343 HOH HOH . 
F 5 HOH A 43 344 344 HOH HOH . 
F 5 HOH A 44 345 345 HOH HOH . 
F 5 HOH A 45 346 346 HOH HOH . 
F 5 HOH A 46 347 347 HOH HOH . 
F 5 HOH A 47 348 348 HOH HOH . 
F 5 HOH A 48 349 349 HOH HOH . 
F 5 HOH A 49 350 350 HOH HOH . 
F 5 HOH A 50 351 351 HOH HOH . 
F 5 HOH A 51 352 352 HOH HOH . 
F 5 HOH A 52 353 353 HOH HOH . 
F 5 HOH A 53 354 354 HOH HOH . 
F 5 HOH A 54 355 355 HOH HOH . 
F 5 HOH A 55 356 356 HOH HOH . 
F 5 HOH A 56 357 357 HOH HOH . 
F 5 HOH A 57 358 358 HOH HOH . 
F 5 HOH A 58 359 359 HOH HOH . 
F 5 HOH A 59 360 360 HOH HOH . 
F 5 HOH A 60 361 361 HOH HOH . 
F 5 HOH A 61 362 362 HOH HOH . 
F 5 HOH A 62 363 363 HOH HOH . 
F 5 HOH A 63 364 364 HOH HOH . 
F 5 HOH A 64 365 365 HOH HOH . 
F 5 HOH A 65 366 366 HOH HOH . 
F 5 HOH A 66 367 367 HOH HOH . 
F 5 HOH A 67 368 368 HOH HOH . 
F 5 HOH A 68 369 369 HOH HOH . 
F 5 HOH A 69 370 370 HOH HOH . 
F 5 HOH A 70 371 371 HOH HOH . 
F 5 HOH A 71 372 372 HOH HOH . 
F 5 HOH A 72 373 373 HOH HOH . 
F 5 HOH A 73 374 374 HOH HOH . 
F 5 HOH A 74 375 375 HOH HOH . 
F 5 HOH A 75 376 376 HOH HOH . 
F 5 HOH A 76 377 377 HOH HOH . 
F 5 HOH A 77 378 378 HOH HOH . 
F 5 HOH A 78 379 379 HOH HOH . 
F 5 HOH A 79 380 380 HOH HOH . 
F 5 HOH A 80 381 381 HOH HOH . 
F 5 HOH A 81 382 382 HOH HOH . 
F 5 HOH A 82 383 383 HOH HOH . 
F 5 HOH A 83 384 384 HOH HOH . 
F 5 HOH A 84 385 385 HOH HOH . 
F 5 HOH A 85 386 386 HOH HOH . 
F 5 HOH A 86 387 387 HOH HOH . 
F 5 HOH A 87 388 388 HOH HOH . 
F 5 HOH A 88 389 389 HOH HOH . 
F 5 HOH A 89 390 390 HOH HOH . 
F 5 HOH A 90 391 391 HOH HOH . 
F 5 HOH A 91 392 392 HOH HOH . 
F 5 HOH A 92 393 393 HOH HOH . 
F 5 HOH A 93 394 394 HOH HOH . 
F 5 HOH A 94 395 395 HOH HOH . 
F 5 HOH A 95 396 396 HOH HOH . 
F 5 HOH A 96 397 397 HOH HOH . 
F 5 HOH A 97 398 398 HOH HOH . 
F 5 HOH A 98 399 399 HOH HOH . 
F 5 HOH A 99 400 400 HOH HOH . 
F 5 HOH A 100 401 401 HOH HOH . 
F 5 HOH A 101 402 402 HOH HOH . 
F 5 HOH A 102 403 403 HOH HOH . 
F 5 HOH A 103 404 404 HOH HOH . 
F 5 HOH A 104 405 405 HOH HOH . 
F 5 HOH A 105 406 406 HOH HOH . 
F 5 HOH A 106 407 407 HOH HOH . 
F 5 HOH A 107 408 408 HOH HOH . 
F 5 HOH A 108 409 409 HOH HOH . 
F 5 HOH A 109 410 410 HOH HOH . 
F 5 HOH A 110 411 411 HOH HOH . 
F 5 HOH A 111 412 412 HOH HOH . 
F 5 HOH A 112 413 413 HOH HOH . 
F 5 HOH A 113 414 414 HOH HOH . 
F 5 HOH A 114 415 415 HOH HOH . 
F 5 HOH A 115 416 416 HOH HOH . 
F 5 HOH A 116 417 417 HOH HOH . 
F 5 HOH A 117 418 418 HOH HOH . 
F 5 HOH A 118 419 419 HOH HOH . 
F 5 HOH A 119 420 420 HOH HOH . 
F 5 HOH A 120 421 421 HOH HOH . 
F 5 HOH A 121 422 422 HOH HOH . 
F 5 HOH A 122 423 423 HOH HOH . 
F 5 HOH A 123 424 424 HOH HOH . 
F 5 HOH A 124 425 425 HOH HOH . 
F 5 HOH A 125 426 426 HOH HOH . 
F 5 HOH A 126 427 427 HOH HOH . 
F 5 HOH A 127 428 428 HOH HOH . 
F 5 HOH A 128 429 429 HOH HOH . 
F 5 HOH A 129 430 430 HOH HOH . 
F 5 HOH A 130 431 431 HOH HOH . 
F 5 HOH A 131 432 432 HOH HOH . 
F 5 HOH A 132 433 433 HOH HOH . 
F 5 HOH A 133 434 434 HOH HOH . 
F 5 HOH A 134 435 435 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DHF . . . D 4 32.087 34.145 13.145 1 15.16 ? N1 DHF 161 A 1 
HETATM 2 C C2 DHF . . . D 4 32.933 33.113 13.164 1 19.1 ? C2 DHF 161 A 1 
HETATM 3 N NA2 DHF . . . D 4 32.685 32.047 13.605 1 24.53 ? NA2 DHF 161 A 1 
HETATM 4 N N3 DHF . . . D 4 34.276 33.305 12.612 1 13.95 ? N3 DHF 161 A 1 
HETATM 5 C C4 DHF . . . D 4 34.715 34.514 12.071 1 21.27 ? C4 DHF 161 A 1 
HETATM 6 O O4 DHF . . . D 4 35.872 34.61 11.622 1 22.01 ? O4 DHF 161 A 1 
HETATM 7 C C4A DHF . . . D 4 33.753 35.648 12.044 1 18.15 ? C4A DHF 161 A 1 
HETATM 8 N N5 DHF . . . D 4 34.172 36.947 11.509 1 14.57 ? N5 DHF 161 A 1 
HETATM 9 C C6 DHF . . . D 4 33.234 37.929 11.612 1 19.55 ? C6 DHF 161 A 1 
HETATM 10 C C7 DHF . . . D 4 32.035 37.522 12.191 1 15.83 ? C7 DHF 161 A 1 
HETATM 11 N N8 DHF . . . D 4 31.642 36.31 12.678 1 15.96 ? N8 DHF 161 A 1 
HETATM 12 C C8A DHF . . . D 4 32.52 35.423 12.58 1 12.58 ? C8A DHF 161 A 1 
HETATM 13 C C9 DHF . . . D 4 33.535 39.258 11.11 1 25.82 ? C9 DHF 161 A 1 
HETATM 14 N N10 DHF . . . D 4 34.803 39.218 10.295 1 16.31 ? N10 DHF 161 A 1 
HETATM 15 C C11 DHF . . . D 4 35.629 37.388 6.304 1 21.92 ? C11 DHF 161 A 1 
HETATM 16 C C12 DHF . . . D 4 36.567 38.273 6.992 1 22.4 ? C12 DHF 161 A 1 
HETATM 17 C C13 DHF . . . D 4 36.209 38.861 8.363 1 21.87 ? C13 DHF 161 A 1 
HETATM 18 C C14 DHF . . . D 4 34.918 38.593 9.105 1 14.54 ? C14 DHF 161 A 1 
HETATM 19 C C15 DHF . . . D 4 33.988 37.775 8.541 1 15.59 ? C15 DHF 161 A 1 
HETATM 20 C C16 DHF . . . D 4 34.291 37.118 7.102 1 16.06 ? C16 DHF 161 A 1 
HETATM 21 C C DHF . . . D 4 35.778 36.714 4.99 1 33.31 ? C DHF 161 A 1 
HETATM 22 O O DHF . . . D 4 36.55 36.856 3.955 1 45.8 ? O DHF 161 A 1 
HETATM 23 N N DHF . . . D 4 35.019 35.836 4.875 1 19.86 ? N DHF 161 A 1 
HETATM 24 C CA DHF . . . D 4 34.948 34.895 3.661 1 25.36 ? CA DHF 161 A 1 
HETATM 25 C CB DHF . . . D 4 35.733 33.716 3.969 1 35.95 ? CB DHF 161 A 1 
HETATM 26 C CG DHF . . . D 4 35.45 32.485 2.999 1 39.11 ? CG DHF 161 A 1 
HETATM 27 C CT DHF . . . D 4 33.446 34.542 3.322 1 23.77 ? CT DHF 161 A 1 
HETATM 28 O O1 DHF . . . D 4 32.549 34.382 4.23 1 18.62 ? O1 DHF 161 A 1 
HETATM 29 O O2 DHF . . . D 4 33.193 34.562 2.111 1 25.17 ? O2 DHF 161 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           29 
#