data_1RF8
#
_model_server_result.job_id            9Et4GqA7kZqFxxEHZhGc0A 
_model_server_result.datetime_utc      '2024-12-18 01:48:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rf8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":321}' 
#
_entry.id    1RF8 
#
_exptl.entry_id    1RF8 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              264.385 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 120 A CYS 120 1_555 C S1 MTN . A MTN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale2 A SG CYS 132 A CYS 132 1_555 D S1 MTN . A MTN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale3 A SG CYS 169 A CYS 169 1_555 E S1 MTN . A MTN 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale4 A SG CYS 200 A CYS 200 1_555 F S1 MTN . A MTN 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C10 H18 N O3 S2' 
_chem_comp.formula_weight    264.385 
_chem_comp.id                MTN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MTSL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 N1 MTN sing 284 n n 
N1 C1 MTN sing 285 n n 
N1 C5 MTN sing 286 n n 
C1 C2 MTN sing 287 n n 
C1 C8 MTN sing 288 n n 
C1 C9 MTN sing 289 n n 
C2 C3 MTN doub 290 n n 
C2 H2 MTN sing 291 n n 
C3 C4 MTN sing 292 n n 
C3 C5 MTN sing 293 n n 
C4 S1 MTN sing 294 n n 
C4 H41 MTN sing 295 n n 
C4 H42 MTN sing 296 n n 
C5 C6 MTN sing 297 n n 
C5 C7 MTN sing 298 n n 
C6 H61 MTN sing 299 n n 
C6 H62 MTN sing 300 n n 
C6 H63 MTN sing 301 n n 
C7 H71 MTN sing 302 n n 
C7 H72 MTN sing 303 n n 
C7 H73 MTN sing 304 n n 
C8 H81 MTN sing 305 n n 
C8 H82 MTN sing 306 n n 
C8 H83 MTN sing 307 n n 
C9 H91 MTN sing 308 n n 
C9 H92 MTN sing 309 n n 
C9 H93 MTN sing 310 n n 
S1 S2 MTN sing 311 n n 
S2 O2 MTN doub 312 n n 
S2 O3 MTN doub 313 n n 
S2 C12 MTN sing 314 n n 
C12 H4 MTN sing 315 n n 
C12 H1 MTN sing 316 n n 
C12 H3 MTN sing 317 n n 
#
_atom_sites.entry_id                     1RF8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MTN A 1 320 220 MTN MTS . 
D 3 MTN A 1 321 221 MTN MTS . 
E 3 MTN A 1 322 222 MTN MTS . 
F 3 MTN A 1 323 223 MTN MTS . 
G 4 M7G A 1 325 214 M7G M7G . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MTN . . . D 3 -7.122 -7.233 -12.849 1 0 ? O1 MTN 321 A 1 
HETATM 2 N N1 MTN . . . D 3 -6.197 -7.618 -12.075 1 0 ? N1 MTN 321 A 1 
HETATM 3 C C1 MTN . . . D 3 -4.923 -8.187 -12.561 1 0 ? C1 MTN 321 A 1 
HETATM 4 C C2 MTN . . . D 3 -4.251 -8.448 -11.265 1 0 ? C2 MTN 321 A 1 
HETATM 5 C C3 MTN . . . D 3 -4.971 -8.107 -10.214 1 0 ? C3 MTN 321 A 1 
HETATM 6 C C4 MTN . . . D 3 -4.537 -8.259 -8.794 1 0 ? C4 MTN 321 A 1 
HETATM 7 S S1 MTN . . . D 3 -2.748 -8.519 -8.566 1 0 ? S1 MTN 321 A 1 
HETATM 8 C C5 MTN . . . D 3 -6.314 -7.531 -10.592 1 0 ? C5 MTN 321 A 1 
HETATM 9 C C6 MTN . . . D 3 -7.489 -8.293 -9.993 1 0 ? C6 MTN 321 A 1 
HETATM 10 C C7 MTN . . . D 3 -6.367 -6.06 -10.196 1 0 ? C7 MTN 321 A 1 
HETATM 11 C C8 MTN . . . D 3 -4.16 -7.143 -13.36 1 0 ? C8 MTN 321 A 1 
HETATM 12 C C9 MTN . . . D 3 -5.113 -9.469 -13.368 1 0 ? C9 MTN 321 A 1 
HETATM 13 H H2 MTN . . . D 3 -3.263 -8.878 -11.189 1 0 ? H2 MTN 321 A 1 
HETATM 14 H H41 MTN . . . D 3 -5.045 -9.112 -8.373 1 0 ? H41 MTN 321 A 1 
HETATM 15 H H42 MTN . . . D 3 -4.822 -7.364 -8.256 1 0 ? H42 MTN 321 A 1 
HETATM 16 H H61 MTN . . . D 3 -7.3 -8.483 -8.947 1 0 ? H61 MTN 321 A 1 
HETATM 17 H H62 MTN . . . D 3 -7.612 -9.231 -10.513 1 0 ? H62 MTN 321 A 1 
HETATM 18 H H63 MTN . . . D 3 -8.389 -7.705 -10.094 1 0 ? H63 MTN 321 A 1 
HETATM 19 H H71 MTN . . . D 3 -7.335 -5.653 -10.453 1 0 ? H71 MTN 321 A 1 
HETATM 20 H H72 MTN . . . D 3 -5.597 -5.516 -10.722 1 0 ? H72 MTN 321 A 1 
HETATM 21 H H73 MTN . . . D 3 -6.21 -5.967 -9.132 1 0 ? H73 MTN 321 A 1 
HETATM 22 H H81 MTN . . . D 3 -4.857 -6.539 -13.921 1 0 ? H81 MTN 321 A 1 
HETATM 23 H H82 MTN . . . D 3 -3.481 -7.636 -14.04 1 0 ? H82 MTN 321 A 1 
HETATM 24 H H83 MTN . . . D 3 -3.599 -6.513 -12.686 1 0 ? H83 MTN 321 A 1 
HETATM 25 H H91 MTN . . . D 3 -5.75 -10.148 -12.821 1 0 ? H91 MTN 321 A 1 
HETATM 26 H H92 MTN . . . D 3 -4.152 -9.934 -13.536 1 0 ? H92 MTN 321 A 1 
HETATM 27 H H93 MTN . . . D 3 -5.57 -9.234 -14.317 1 0 ? H93 MTN 321 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    84 
_model_server_stats.query_time_ms           3355 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#