data_1RF8 # _model_server_result.job_id sSzSho5ET931bnE8ct5_qA _model_server_result.datetime_utc '2025-01-30 18:56:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":323}' # _entry.id 1RF8 # _exptl.entry_id 1RF8 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 264.385 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 120 A CYS 120 1_555 C S1 MTN . A MTN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale2 A SG CYS 132 A CYS 132 1_555 D S1 MTN . A MTN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale3 A SG CYS 169 A CYS 169 1_555 E S1 MTN . A MTN 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale4 A SG CYS 200 A CYS 200 1_555 F S1 MTN . A MTN 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 284 n n N1 C1 MTN sing 285 n n N1 C5 MTN sing 286 n n C1 C2 MTN sing 287 n n C1 C8 MTN sing 288 n n C1 C9 MTN sing 289 n n C2 C3 MTN doub 290 n n C2 H2 MTN sing 291 n n C3 C4 MTN sing 292 n n C3 C5 MTN sing 293 n n C4 S1 MTN sing 294 n n C4 H41 MTN sing 295 n n C4 H42 MTN sing 296 n n C5 C6 MTN sing 297 n n C5 C7 MTN sing 298 n n C6 H61 MTN sing 299 n n C6 H62 MTN sing 300 n n C6 H63 MTN sing 301 n n C7 H71 MTN sing 302 n n C7 H72 MTN sing 303 n n C7 H73 MTN sing 304 n n C8 H81 MTN sing 305 n n C8 H82 MTN sing 306 n n C8 H83 MTN sing 307 n n C9 H91 MTN sing 308 n n C9 H92 MTN sing 309 n n C9 H93 MTN sing 310 n n S1 S2 MTN sing 311 n n S2 O2 MTN doub 312 n n S2 O3 MTN doub 313 n n S2 C12 MTN sing 314 n n C12 H4 MTN sing 315 n n C12 H1 MTN sing 316 n n C12 H3 MTN sing 317 n n # _atom_sites.entry_id 1RF8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTN A 1 320 220 MTN MTS . D 3 MTN A 1 321 221 MTN MTS . E 3 MTN A 1 322 222 MTN MTS . F 3 MTN A 1 323 223 MTN MTS . G 4 M7G A 1 325 214 M7G M7G . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . . . F 3 27.692 -4.94 13.45 1 0 ? O1 MTN 323 A 1 HETATM 2 N N1 MTN . . . F 3 27.685 -5.088 12.192 1 0 ? N1 MTN 323 A 1 HETATM 3 C C1 MTN . . . F 3 27.2 -4.047 11.26 1 0 ? C1 MTN 323 A 1 HETATM 4 C C2 MTN . . . F 3 27.419 -4.742 9.968 1 0 ? C2 MTN 323 A 1 HETATM 5 C C3 MTN . . . F 3 27.931 -5.953 10.095 1 0 ? C3 MTN 323 A 1 HETATM 6 C C4 MTN . . . F 3 28.253 -6.87 8.963 1 0 ? C4 MTN 323 A 1 HETATM 7 S S1 MTN . . . F 3 28.231 -6.091 7.317 1 0 ? S1 MTN 323 A 1 HETATM 8 C C5 MTN . . . F 3 28.168 -6.334 11.536 1 0 ? C5 MTN 323 A 1 HETATM 9 C C6 MTN . . . F 3 27.439 -7.606 11.952 1 0 ? C6 MTN 323 A 1 HETATM 10 C C7 MTN . . . F 3 29.666 -6.465 11.787 1 0 ? C7 MTN 323 A 1 HETATM 11 C C8 MTN . . . F 3 28.077 -2.811 11.361 1 0 ? C8 MTN 323 A 1 HETATM 12 C C9 MTN . . . F 3 25.728 -3.698 11.471 1 0 ? C9 MTN 323 A 1 HETATM 13 H H2 MTN . . . F 3 27.182 -4.299 9.012 1 0 ? H2 MTN 323 A 1 HETATM 14 H H41 MTN . . . F 3 27.527 -7.666 8.954 1 0 ? H41 MTN 323 A 1 HETATM 15 H H42 MTN . . . F 3 29.241 -7.281 9.133 1 0 ? H42 MTN 323 A 1 HETATM 16 H H61 MTN . . . F 3 26.379 -7.411 12.006 1 0 ? H61 MTN 323 A 1 HETATM 17 H H62 MTN . . . F 3 27.797 -7.927 12.919 1 0 ? H62 MTN 323 A 1 HETATM 18 H H63 MTN . . . F 3 27.625 -8.383 11.224 1 0 ? H63 MTN 323 A 1 HETATM 19 H H71 MTN . . . F 3 30.086 -7.185 11.1 1 0 ? H71 MTN 323 A 1 HETATM 20 H H72 MTN . . . F 3 29.833 -6.797 12.802 1 0 ? H72 MTN 323 A 1 HETATM 21 H H73 MTN . . . F 3 30.142 -5.507 11.639 1 0 ? H73 MTN 323 A 1 HETATM 22 H H81 MTN . . . F 3 27.456 -1.927 11.363 1 0 ? H81 MTN 323 A 1 HETATM 23 H H82 MTN . . . F 3 28.749 -2.776 10.516 1 0 ? H82 MTN 323 A 1 HETATM 24 H H83 MTN . . . F 3 28.651 -2.849 12.275 1 0 ? H83 MTN 323 A 1 HETATM 25 H H91 MTN . . . F 3 25.203 -4.564 11.847 1 0 ? H91 MTN 323 A 1 HETATM 26 H H92 MTN . . . F 3 25.292 -3.393 10.531 1 0 ? H92 MTN 323 A 1 HETATM 27 H H93 MTN . . . F 3 25.647 -2.892 12.184 1 0 ? H93 MTN 323 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 104 _model_server_stats.query_time_ms 3326 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #