data_1RFG # _model_server_result.job_id AG4sunLVrragFrUk3pFb3Q _model_server_result.datetime_utc '2025-08-28 10:23:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":290}' # _entry.id 1RFG # _exptl.entry_id 1RFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.241 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RFG _cell.length_a 139.38 _cell.length_b 139.38 _cell.length_c 160.4 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 209.07 120.706621 0 3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 241.413242 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O5' _chem_comp.formula_weight 283.241 _chem_comp.id GMP _chem_comp.mon_nstd_flag . _chem_comp.name GUANOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' GMP sing 129 n n O5' HO5' GMP sing 130 n n C5' C4' GMP sing 131 n n C5' "H5'1" GMP sing 132 n n C5' "H5'2" GMP sing 133 n n C4' O4' GMP sing 134 n n C4' C3' GMP sing 135 n n C4' H4' GMP sing 136 n n O4' C1' GMP sing 137 n n C3' O3' GMP sing 138 n n C3' C2' GMP sing 139 n n C3' H3' GMP sing 140 n n O3' HO3' GMP sing 141 n n C2' O2' GMP sing 142 n n C2' C1' GMP sing 143 n n C2' H2' GMP sing 144 n n O2' HO2' GMP sing 145 n n C1' N9 GMP sing 146 n n C1' H1' GMP sing 147 n n N9 C8 GMP sing 148 n y N9 C4 GMP sing 149 n y C8 N7 GMP doub 150 n y C8 H8 GMP sing 151 n n N7 C5 GMP sing 152 n y C5 C6 GMP sing 153 n n C5 C4 GMP doub 154 n y C6 O6 GMP doub 155 n n C6 N1 GMP sing 156 n n N1 C2 GMP sing 157 n n N1 HN1 GMP sing 158 n n C2 N2 GMP sing 159 n n C2 N3 GMP doub 160 n n N2 HN21 GMP sing 161 n n N2 HN22 GMP sing 162 n n N3 C4 GMP sing 163 n n # _atom_sites.entry_id 1RFG _atom_sites.fract_transf_matrix[1][1] 0.00717 _atom_sites.fract_transf_matrix[1][2] 0.00414 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 E 1 291 291 SO4 SO4 . C 2 SO4 E 1 292 292 SO4 SO4 . D 2 SO4 E 1 293 293 SO4 SO4 . E 3 GMP E 1 290 290 GMP GUO . F 4 HOH E 1 294 294 HOH WAT . F 4 HOH E 2 295 295 HOH WAT . F 4 HOH E 3 296 296 HOH WAT . F 4 HOH E 4 297 297 HOH WAT . F 4 HOH E 5 298 298 HOH WAT . F 4 HOH E 6 299 299 HOH WAT . F 4 HOH E 7 300 300 HOH WAT . F 4 HOH E 8 301 301 HOH WAT . F 4 HOH E 9 302 302 HOH WAT . F 4 HOH E 10 303 303 HOH WAT . F 4 HOH E 11 304 304 HOH WAT . F 4 HOH E 12 305 305 HOH WAT . F 4 HOH E 13 306 306 HOH WAT . F 4 HOH E 14 307 307 HOH WAT . F 4 HOH E 15 308 308 HOH WAT . F 4 HOH E 16 309 309 HOH WAT . F 4 HOH E 17 310 310 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' GMP . . . E 3 50.3 130.125 56.262 1 55.21 ? O5' GMP 290 E 1 HETATM 2 C C5' GMP . . . E 3 51.242 129.531 57.216 1 44.84 ? C5' GMP 290 E 1 HETATM 3 C C4' GMP . . . E 3 51.005 128.023 57.468 1 41.78 ? C4' GMP 290 E 1 HETATM 4 O O4' GMP . . . E 3 50.694 127.524 56.146 1 56.02 ? O4' GMP 290 E 1 HETATM 5 C C3' GMP . . . E 3 52.235 127.206 57.974 1 41.88 ? C3' GMP 290 E 1 HETATM 6 O O3' GMP . . . E 3 51.869 126.194 59 1 41.68 ? O3' GMP 290 E 1 HETATM 7 C C2' GMP . . . E 3 52.869 126.525 56.646 1 42.82 ? C2' GMP 290 E 1 HETATM 8 O O2' GMP . . . E 3 52.988 125.05 56.728 1 41.9 ? O2' GMP 290 E 1 HETATM 9 C C1' GMP . . . E 3 51.84 126.79 55.542 1 43.94 ? C1' GMP 290 E 1 HETATM 10 N N9 GMP . . . E 3 52.282 127.547 54.346 1 43.24 ? N9 GMP 290 E 1 HETATM 11 C C8 GMP . . . E 3 51.432 128.286 53.572 1 45.03 ? C8 GMP 290 E 1 HETATM 12 N N7 GMP . . . E 3 52.157 128.915 52.481 1 39.9 ? N7 GMP 290 E 1 HETATM 13 C C5 GMP . . . E 3 53.477 128.477 52.687 1 33.92 ? C5 GMP 290 E 1 HETATM 14 C C6 GMP . . . E 3 54.624 128.841 51.859 1 36.24 ? C6 GMP 290 E 1 HETATM 15 O O6 GMP . . . E 3 54.64 129.582 50.842 1 42.89 ? O6 GMP 290 E 1 HETATM 16 N N1 GMP . . . E 3 55.776 128.238 52.364 1 26.85 ? N1 GMP 290 E 1 HETATM 17 C C2 GMP . . . E 3 55.858 127.421 53.47 1 29.42 ? C2 GMP 290 E 1 HETATM 18 N N2 GMP . . . E 3 57.149 126.89 53.845 1 44.39 ? N2 GMP 290 E 1 HETATM 19 N N3 GMP . . . E 3 54.762 127.123 54.183 1 32.49 ? N3 GMP 290 E 1 HETATM 20 C C4 GMP . . . E 3 53.605 127.676 53.773 1 38.39 ? C4 GMP 290 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 532 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #