data_1RFJ # _model_server_result.job_id Fdoqgi9QpQ2IWDOeVNwmyw _model_server_result.datetime_utc '2025-04-16 00:18:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 1RFJ # _exptl.entry_id 1RFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RFJ _cell.length_a 24.44 _cell.length_b 68.98 _cell.length_c 109.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 21 A ASP 20 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A OD1 ASP 23 A ASP 22 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc3 A OD2 ASP 25 A ASP 24 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 A O CYS 27 A CYS 26 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc7 A OD2 ASP 57 A ASP 56 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc8 A OD2 ASP 59 A ASP 58 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc9 A OD1 ASN 61 A ASN 60 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc10 A O THR 63 A THR 62 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc11 A OE1 GLU 68 A GLU 67 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc12 A OE2 GLU 68 A GLU 67 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc13 A OD2 ASP 94 A ASP 93 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc14 A OD1 ASP 96 A ASP 95 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 A OD1 ASN 98 A ASN 97 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc16 A O PHE 100 A PHE 99 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc17 A OE1 GLU 105 A GLU 104 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc18 A OE2 GLU 105 A GLU 104 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc19 A OD1 ASP 130 A ASP 129 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc20 A OD2 ASP 132 A ASP 131 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc21 A OD2 ASP 134 A ASP 133 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc22 A O GLN 136 A GLN 135 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc23 A OE1 GLU 141 A GLU 140 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc24 A OE2 GLU 141 A GLU 140 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc25 B CA CA . A CA 1001 1_555 I O HOH . A HOH 4109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc26 C CA CA . A CA 1002 1_555 I O HOH . A HOH 4006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? metalc ? metalc27 C CA CA . A CA 1002 1_555 I O HOH . A HOH 4056 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc28 D CA CA . A CA 1003 1_555 I O HOH . A HOH 4063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc29 E CA CA . A CA 1004 1_555 I O HOH . A HOH 4062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RFJ _atom_sites.fract_transf_matrix[1][1] 0.040917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1001 1 CA CA . C 2 CA A 1 1002 2 CA CA . D 2 CA A 1 1003 3 CA CA . E 2 CA A 1 1004 4 CA CA . F 3 MPD A 1 2001 1 MPD MPD . G 3 MPD A 1 3001 1 MPD MPD . H 3 MPD A 1 4001 1 MPD MPD . I 4 HOH A 1 4002 1 HOH TIP . I 4 HOH A 2 4003 2 HOH TIP . I 4 HOH A 3 4004 3 HOH TIP . I 4 HOH A 4 4005 4 HOH TIP . I 4 HOH A 5 4006 5 HOH TIP . I 4 HOH A 6 4007 6 HOH TIP . I 4 HOH A 7 4008 7 HOH TIP . I 4 HOH A 8 4009 8 HOH TIP . I 4 HOH A 9 4010 9 HOH TIP . I 4 HOH A 10 4011 10 HOH TIP . I 4 HOH A 11 4012 11 HOH TIP . I 4 HOH A 12 4013 12 HOH TIP . I 4 HOH A 13 4014 13 HOH TIP . I 4 HOH A 14 4015 14 HOH TIP . I 4 HOH A 15 4016 15 HOH TIP . I 4 HOH A 16 4017 16 HOH TIP . I 4 HOH A 17 4018 17 HOH TIP . I 4 HOH A 18 4019 18 HOH TIP . I 4 HOH A 19 4020 19 HOH TIP . I 4 HOH A 20 4021 20 HOH TIP . I 4 HOH A 21 4022 21 HOH TIP . I 4 HOH A 22 4023 22 HOH TIP . I 4 HOH A 23 4024 23 HOH TIP . I 4 HOH A 24 4025 24 HOH TIP . I 4 HOH A 25 4026 25 HOH TIP . I 4 HOH A 26 4027 26 HOH TIP . I 4 HOH A 27 4028 27 HOH TIP . I 4 HOH A 28 4029 28 HOH TIP . I 4 HOH A 29 4030 29 HOH TIP . I 4 HOH A 30 4031 30 HOH TIP . I 4 HOH A 31 4032 31 HOH TIP . I 4 HOH A 32 4033 32 HOH TIP . I 4 HOH A 33 4034 33 HOH TIP . I 4 HOH A 34 4035 34 HOH TIP . I 4 HOH A 35 4036 35 HOH TIP . I 4 HOH A 36 4037 36 HOH TIP . I 4 HOH A 37 4038 37 HOH TIP . I 4 HOH A 38 4039 38 HOH TIP . I 4 HOH A 39 4040 39 HOH TIP . I 4 HOH A 40 4041 40 HOH TIP . I 4 HOH A 41 4042 41 HOH TIP . I 4 HOH A 42 4043 42 HOH TIP . I 4 HOH A 43 4044 43 HOH TIP . I 4 HOH A 44 4045 44 HOH TIP . I 4 HOH A 45 4046 45 HOH TIP . I 4 HOH A 46 4047 46 HOH TIP . I 4 HOH A 47 4048 47 HOH TIP . I 4 HOH A 48 4049 48 HOH TIP . I 4 HOH A 49 4050 49 HOH TIP . I 4 HOH A 50 4051 50 HOH TIP . I 4 HOH A 51 4052 51 HOH TIP . I 4 HOH A 52 4053 52 HOH TIP . I 4 HOH A 53 4054 53 HOH TIP . I 4 HOH A 54 4055 54 HOH TIP . I 4 HOH A 55 4056 55 HOH TIP . I 4 HOH A 56 4057 56 HOH TIP . I 4 HOH A 57 4058 57 HOH TIP . I 4 HOH A 58 4059 58 HOH TIP . I 4 HOH A 59 4060 59 HOH TIP . I 4 HOH A 60 4061 60 HOH TIP . I 4 HOH A 61 4062 61 HOH TIP . I 4 HOH A 62 4063 62 HOH TIP . I 4 HOH A 63 4064 63 HOH TIP . I 4 HOH A 64 4065 64 HOH TIP . I 4 HOH A 65 4066 65 HOH TIP . I 4 HOH A 66 4067 66 HOH TIP . I 4 HOH A 67 4068 67 HOH TIP . I 4 HOH A 68 4069 68 HOH TIP . I 4 HOH A 69 4070 69 HOH TIP . I 4 HOH A 70 4071 70 HOH TIP . I 4 HOH A 71 4072 71 HOH TIP . I 4 HOH A 72 4073 72 HOH TIP . I 4 HOH A 73 4074 73 HOH TIP . I 4 HOH A 74 4075 74 HOH TIP . I 4 HOH A 75 4076 75 HOH TIP . I 4 HOH A 76 4077 76 HOH TIP . I 4 HOH A 77 4078 77 HOH TIP . I 4 HOH A 78 4079 78 HOH TIP . I 4 HOH A 79 4080 79 HOH TIP . I 4 HOH A 80 4081 80 HOH TIP . I 4 HOH A 81 4082 81 HOH TIP . I 4 HOH A 82 4083 82 HOH TIP . I 4 HOH A 83 4084 83 HOH TIP . I 4 HOH A 84 4085 84 HOH TIP . I 4 HOH A 85 4086 85 HOH TIP . I 4 HOH A 86 4087 86 HOH TIP . I 4 HOH A 87 4088 88 HOH TIP . I 4 HOH A 88 4089 89 HOH TIP . I 4 HOH A 89 4090 90 HOH TIP . I 4 HOH A 90 4091 91 HOH TIP . I 4 HOH A 91 4092 92 HOH TIP . I 4 HOH A 92 4093 93 HOH TIP . I 4 HOH A 93 4094 94 HOH TIP . I 4 HOH A 94 4095 95 HOH TIP . I 4 HOH A 95 4096 96 HOH TIP . I 4 HOH A 96 4097 97 HOH TIP . I 4 HOH A 97 4098 98 HOH TIP . I 4 HOH A 98 4099 99 HOH TIP . I 4 HOH A 99 4100 100 HOH TIP . I 4 HOH A 100 4101 101 HOH TIP . I 4 HOH A 101 4102 102 HOH TIP . I 4 HOH A 102 4103 103 HOH TIP . I 4 HOH A 103 4104 104 HOH TIP . I 4 HOH A 104 4105 105 HOH TIP . I 4 HOH A 105 4106 106 HOH TIP . I 4 HOH A 106 4107 107 HOH TIP . I 4 HOH A 107 4108 108 HOH TIP . I 4 HOH A 108 4109 109 HOH TIP . I 4 HOH A 109 4110 110 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.079 _atom_site.Cartn_y 22.653 _atom_site.Cartn_z 42.239 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #