data_1RFQ # _model_server_result.job_id 99wiSc4o4s_bfdnqGDI-Zw _model_server_result.datetime_utc '2024-11-16 13:54:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":376}' # _entry.id 1RFQ # _exptl.entry_id 1RFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RFQ _cell.length_a 101.5 _cell.length_b 101.5 _cell.length_c 104.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 GLN 137 A GLN 137 1_555 C MG MG . A MG 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc2 D O3G ATP . A ATP 376 1_555 C MG MG . A MG 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 D O2B ATP . A ATP 376 1_555 C MG MG . A MG 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc4 B OE1 GLN 137 B GLN 137 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc5 G O3G ATP . B ATP 386 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc6 G O2B ATP . B ATP 386 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc7 G O1G ATP . B ATP 386 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1RFQ _atom_sites.fract_transf_matrix[1][1] 0.009852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 378 378 MG MG2 . D 3 ATP A 1 376 376 ATP ATP . E 4 LAR A 1 377 377 LAR LAR . F 2 MG B 1 388 378 MG MG2 . G 3 ATP B 1 386 376 ATP ATP . H 4 LAR B 1 387 377 LAR LAR . I 5 HOH A 1 379 1 HOH HOH . I 5 HOH A 2 380 4 HOH HOH . I 5 HOH A 3 381 6 HOH HOH . I 5 HOH A 4 382 8 HOH HOH . I 5 HOH A 5 383 9 HOH HOH . I 5 HOH A 6 384 10 HOH HOH . I 5 HOH A 7 385 11 HOH HOH . I 5 HOH A 8 386 14 HOH HOH . I 5 HOH A 9 387 15 HOH HOH . I 5 HOH A 10 388 17 HOH HOH . I 5 HOH A 11 389 18 HOH HOH . I 5 HOH A 12 390 22 HOH HOH . I 5 HOH A 13 391 23 HOH HOH . I 5 HOH A 14 392 24 HOH HOH . I 5 HOH A 15 393 26 HOH HOH . I 5 HOH A 16 394 30 HOH HOH . I 5 HOH A 17 395 31 HOH HOH . I 5 HOH A 18 396 32 HOH HOH . I 5 HOH A 19 397 33 HOH HOH . I 5 HOH A 20 398 34 HOH HOH . I 5 HOH A 21 399 35 HOH HOH . I 5 HOH A 22 400 42 HOH HOH . J 5 HOH B 1 389 2 HOH HOH . J 5 HOH B 2 390 3 HOH HOH . J 5 HOH B 3 391 5 HOH HOH . J 5 HOH B 4 392 7 HOH HOH . J 5 HOH B 5 393 12 HOH HOH . J 5 HOH B 6 394 13 HOH HOH . J 5 HOH B 7 395 16 HOH HOH . J 5 HOH B 8 396 19 HOH HOH . J 5 HOH B 9 397 20 HOH HOH . J 5 HOH B 10 398 21 HOH HOH . J 5 HOH B 11 399 25 HOH HOH . J 5 HOH B 12 400 27 HOH HOH . J 5 HOH B 13 401 28 HOH HOH . J 5 HOH B 14 402 29 HOH HOH . J 5 HOH B 15 403 36 HOH HOH . J 5 HOH B 16 404 37 HOH HOH . J 5 HOH B 17 405 38 HOH HOH . J 5 HOH B 18 406 39 HOH HOH . J 5 HOH B 19 407 40 HOH HOH . J 5 HOH B 20 408 41 HOH HOH . J 5 HOH B 21 409 43 HOH HOH . J 5 HOH B 22 410 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 -18.364 123.32 57.385 1 42.45 ? PG ATP 376 A 1 HETATM 2 O O1G ATP . . . D 3 -18.03 124.39 56.385 1 37.7 ? O1G ATP 376 A 1 HETATM 3 O O2G ATP . . . D 3 -18.875 123.816 58.686 1 40.98 ? O2G ATP 376 A 1 HETATM 4 O O3G ATP . . . D 3 -19.284 122.328 56.758 1 41.85 ? O3G ATP 376 A 1 HETATM 5 P PB ATP . . . D 3 -16.371 121.236 57.134 1 41.65 ? PB ATP 376 A 1 HETATM 6 O O1B ATP . . . D 3 -15.087 120.909 57.596 1 41.99 ? O1B ATP 376 A 1 HETATM 7 O O2B ATP . . . D 3 -16.959 120.606 55.954 1 42.17 ? O2B ATP 376 A 1 HETATM 8 O O3B ATP . . . D 3 -17.058 122.488 57.792 1 40.17 ? O3B ATP 376 A 1 HETATM 9 P PA ATP . . . D 3 -17.567 118.769 58.049 1 47.17 ? PA ATP 376 A 1 HETATM 10 O O1A ATP . . . D 3 -18.985 118.592 57.997 1 47.09 ? O1A ATP 376 A 1 HETATM 11 O O2A ATP . . . D 3 -16.633 117.67 57.777 1 47.66 ? O2A ATP 376 A 1 HETATM 12 O O3A ATP . . . D 3 -16.992 120.207 58.268 1 43.61 ? O3A ATP 376 A 1 HETATM 13 O O5' ATP . . . D 3 -17.824 118.591 59.485 1 46.69 ? O5' ATP 376 A 1 HETATM 14 C C5' ATP . . . D 3 -17.531 118.514 60.711 1 48.34 ? C5' ATP 376 A 1 HETATM 15 C C4' ATP . . . D 3 -17.947 118.757 62.1 1 50.97 ? C4' ATP 376 A 1 HETATM 16 O O4' ATP . . . D 3 -19.031 117.828 62.339 1 51.74 ? O4' ATP 376 A 1 HETATM 17 C C3' ATP . . . D 3 -16.727 118.317 62.804 1 52.06 ? C3' ATP 376 A 1 HETATM 18 O O3' ATP . . . D 3 -15.722 119.293 62.99 1 53.21 ? O3' ATP 376 A 1 HETATM 19 C C2' ATP . . . D 3 -17.338 117.722 64.086 1 52.02 ? C2' ATP 376 A 1 HETATM 20 O O2' ATP . . . D 3 -17.438 118.708 65.108 1 52.42 ? O2' ATP 376 A 1 HETATM 21 C C1' ATP . . . D 3 -18.721 117.168 63.631 1 52.8 ? C1' ATP 376 A 1 HETATM 22 N N9 ATP . . . D 3 -18.725 115.705 63.447 1 53.9 ? N9 ATP 376 A 1 HETATM 23 C C8 ATP . . . D 3 -17.778 114.831 62.885 1 54.3 ? C8 ATP 376 A 1 HETATM 24 N N7 ATP . . . D 3 -18.129 113.585 62.909 1 55.61 ? N7 ATP 376 A 1 HETATM 25 C C5 ATP . . . D 3 -19.371 113.637 63.531 1 55.16 ? C5 ATP 376 A 1 HETATM 26 C C6 ATP . . . D 3 -20.404 112.609 63.917 1 54.47 ? C6 ATP 376 A 1 HETATM 27 N N6 ATP . . . D 3 -20.254 111.328 63.7 1 55.79 ? N6 ATP 376 A 1 HETATM 28 N N1 ATP . . . D 3 -21.547 113.045 64.53 1 55.01 ? N1 ATP 376 A 1 HETATM 29 C C2 ATP . . . D 3 -21.739 114.346 64.774 1 56.32 ? C2 ATP 376 A 1 HETATM 30 N N3 ATP . . . D 3 -20.894 115.367 64.476 1 56.7 ? N3 ATP 376 A 1 HETATM 31 C C4 ATP . . . D 3 -19.717 114.919 63.854 1 55.01 ? C4 ATP 376 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #