data_1RFQ # _model_server_result.job_id 1AFhkObH57XL4h-LMTjNlw _model_server_result.datetime_utc '2024-11-16 13:49:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":387}' # _entry.id 1RFQ # _exptl.entry_id 1RFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LATRUNCULIN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RFQ _cell.length_a 101.5 _cell.length_b 101.5 _cell.length_c 104.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 GLN 137 A GLN 137 1_555 C MG MG . A MG 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc2 D O3G ATP . A ATP 376 1_555 C MG MG . A MG 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 D O2B ATP . A ATP 376 1_555 C MG MG . A MG 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc4 B OE1 GLN 137 B GLN 137 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc5 G O3G ATP . B ATP 386 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc6 G O2B ATP . B ATP 386 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc7 G O1G ATP . B ATP 386 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? # _chem_comp.formula 'C22 H31 N O5 S' _chem_comp.formula_weight 421.55 _chem_comp.id LAR _chem_comp.mon_nstd_flag . _chem_comp.name 'LATRUNCULIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16-DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2-THIAZOLIDINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C19 LAR sing 222 n n S1 C20 LAR sing 223 n n N1 C18 LAR sing 224 n n N1 C20 LAR sing 225 n n N1 HN1 LAR sing 226 n n O1 C1 LAR doub 227 n n O2 C1 LAR sing 228 n n O2 C15 LAR sing 229 n n O3 C13 LAR sing 230 n n O3 C17 LAR sing 231 n n O4 C17 LAR sing 232 n n O4 HO4 LAR sing 233 n n O5 C20 LAR doub 234 n n C1 C2 LAR sing 235 n n C2 C3 LAR doub 236 z n C2 H21 LAR sing 237 n n C3 C4 LAR sing 238 n n C3 C21 LAR sing 239 n n C4 C5 LAR sing 240 n n C4 H41 LAR sing 241 n n C4 H42 LAR sing 242 n n C5 C6 LAR sing 243 n n C5 H51 LAR sing 244 n n C5 H52 LAR sing 245 n n C6 C7 LAR doub 246 e n C6 H61 LAR sing 247 n n C7 C8 LAR sing 248 n n C7 H71 LAR sing 249 n n C8 C9 LAR doub 250 z n C8 H81 LAR sing 251 n n C9 C10 LAR sing 252 n n C9 H91 LAR sing 253 n n C10 C11 LAR sing 254 n n C10 C22 LAR sing 255 n n C10 H101 LAR sing 256 n n C11 C12 LAR sing 257 n n C11 H111 LAR sing 258 n n C11 H112 LAR sing 259 n n C12 C13 LAR sing 260 n n C12 H121 LAR sing 261 n n C12 H122 LAR sing 262 n n C13 C14 LAR sing 263 n n C13 H131 LAR sing 264 n n C14 C15 LAR sing 265 n n C14 H141 LAR sing 266 n n C14 H142 LAR sing 267 n n C15 C16 LAR sing 268 n n C15 H151 LAR sing 269 n n C16 C17 LAR sing 270 n n C16 H161 LAR sing 271 n n C16 H162 LAR sing 272 n n C17 C18 LAR sing 273 n n C18 C19 LAR sing 274 n n C18 H181 LAR sing 275 n n C19 H191 LAR sing 276 n n C19 H192 LAR sing 277 n n C21 H211 LAR sing 278 n n C21 H212 LAR sing 279 n n C21 H213 LAR sing 280 n n C22 H221 LAR sing 281 n n C22 H222 LAR sing 282 n n C22 H223 LAR sing 283 n n # _atom_sites.entry_id 1RFQ _atom_sites.fract_transf_matrix[1][1] 0.009852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 378 378 MG MG2 . D 3 ATP A 1 376 376 ATP ATP . E 4 LAR A 1 377 377 LAR LAR . F 2 MG B 1 388 378 MG MG2 . G 3 ATP B 1 386 376 ATP ATP . H 4 LAR B 1 387 377 LAR LAR . I 5 HOH A 1 379 1 HOH HOH . I 5 HOH A 2 380 4 HOH HOH . I 5 HOH A 3 381 6 HOH HOH . I 5 HOH A 4 382 8 HOH HOH . I 5 HOH A 5 383 9 HOH HOH . I 5 HOH A 6 384 10 HOH HOH . I 5 HOH A 7 385 11 HOH HOH . I 5 HOH A 8 386 14 HOH HOH . I 5 HOH A 9 387 15 HOH HOH . I 5 HOH A 10 388 17 HOH HOH . I 5 HOH A 11 389 18 HOH HOH . I 5 HOH A 12 390 22 HOH HOH . I 5 HOH A 13 391 23 HOH HOH . I 5 HOH A 14 392 24 HOH HOH . I 5 HOH A 15 393 26 HOH HOH . I 5 HOH A 16 394 30 HOH HOH . I 5 HOH A 17 395 31 HOH HOH . I 5 HOH A 18 396 32 HOH HOH . I 5 HOH A 19 397 33 HOH HOH . I 5 HOH A 20 398 34 HOH HOH . I 5 HOH A 21 399 35 HOH HOH . I 5 HOH A 22 400 42 HOH HOH . J 5 HOH B 1 389 2 HOH HOH . J 5 HOH B 2 390 3 HOH HOH . J 5 HOH B 3 391 5 HOH HOH . J 5 HOH B 4 392 7 HOH HOH . J 5 HOH B 5 393 12 HOH HOH . J 5 HOH B 6 394 13 HOH HOH . J 5 HOH B 7 395 16 HOH HOH . J 5 HOH B 8 396 19 HOH HOH . J 5 HOH B 9 397 20 HOH HOH . J 5 HOH B 10 398 21 HOH HOH . J 5 HOH B 11 399 25 HOH HOH . J 5 HOH B 12 400 27 HOH HOH . J 5 HOH B 13 401 28 HOH HOH . J 5 HOH B 14 402 29 HOH HOH . J 5 HOH B 15 403 36 HOH HOH . J 5 HOH B 16 404 37 HOH HOH . J 5 HOH B 17 405 38 HOH HOH . J 5 HOH B 18 406 39 HOH HOH . J 5 HOH B 19 407 40 HOH HOH . J 5 HOH B 20 408 41 HOH HOH . J 5 HOH B 21 409 43 HOH HOH . J 5 HOH B 22 410 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 LAR . . . H 4 -28.417 141.312 -3.629 1 67.47 ? S1 LAR 387 B 1 HETATM 2 N N1 LAR . . . H 4 -28.636 140.666 -1.204 1 67.87 ? N1 LAR 387 B 1 HETATM 3 O O1 LAR . . . H 4 -33.046 140.734 1.575 1 71.39 ? O1 LAR 387 B 1 HETATM 4 O O2 LAR . . . H 4 -32.324 142.876 1.176 1 69.9 ? O2 LAR 387 B 1 HETATM 5 O O3 LAR . . . H 4 -29.001 144.004 0.24 1 70.83 ? O3 LAR 387 B 1 HETATM 6 O O4 LAR . . . H 4 -30.594 142.988 -1.138 1 68.94 ? O4 LAR 387 B 1 HETATM 7 O O5 LAR . . . H 4 -28.957 138.933 -2.674 1 66.24 ? O5 LAR 387 B 1 HETATM 8 C C1 LAR . . . H 4 -33.252 141.85 1.114 1 71.46 ? C1 LAR 387 B 1 HETATM 9 C C2 LAR . . . H 4 -34.512 142.2 0.422 1 73.2 ? C2 LAR 387 B 1 HETATM 10 C C3 LAR . . . H 4 -35.017 143.298 -0.168 1 75.66 ? C3 LAR 387 B 1 HETATM 11 C C4 LAR . . . H 4 -34.305 144.612 -0.267 1 77.45 ? C4 LAR 387 B 1 HETATM 12 C C5 LAR . . . H 4 -34.903 145.576 0.712 1 78.03 ? C5 LAR 387 B 1 HETATM 13 C C6 LAR . . . H 4 -34.024 146.755 1.05 1 78.99 ? C6 LAR 387 B 1 HETATM 14 C C7 LAR . . . H 4 -32.797 147.11 0.646 1 78.17 ? C7 LAR 387 B 1 HETATM 15 C C8 LAR . . . H 4 -32.136 148.309 1.108 1 77.29 ? C8 LAR 387 B 1 HETATM 16 C C9 LAR . . . H 4 -30.882 148.643 0.696 1 76.91 ? C9 LAR 387 B 1 HETATM 17 C C10 LAR . . . H 4 -30.058 147.807 -0.276 1 77.06 ? C10 LAR 387 B 1 HETATM 18 C C11 LAR . . . H 4 -28.932 147.029 0.378 1 75.67 ? C11 LAR 387 B 1 HETATM 19 C C12 LAR . . . H 4 -29.344 146.078 1.483 1 73.51 ? C12 LAR 387 B 1 HETATM 20 C C13 LAR . . . H 4 -29.989 144.778 1.053 1 71.61 ? C13 LAR 387 B 1 HETATM 21 C C14 LAR . . . H 4 -30.436 143.971 2.268 1 70.31 ? C14 LAR 387 B 1 HETATM 22 C C15 LAR . . . H 4 -31.003 142.626 1.833 1 70.31 ? C15 LAR 387 B 1 HETATM 23 C C16 LAR . . . H 4 -30.052 141.871 0.888 1 70.35 ? C16 LAR 387 B 1 HETATM 24 C C17 LAR . . . H 4 -29.51 142.752 -0.252 1 69.97 ? C17 LAR 387 B 1 HETATM 25 C C18 LAR . . . H 4 -28.349 142.138 -1.043 1 68.85 ? C18 LAR 387 B 1 HETATM 26 C C19 LAR . . . H 4 -28.133 142.679 -2.428 1 68.21 ? C19 LAR 387 B 1 HETATM 27 C C20 LAR . . . H 4 -28.717 140.081 -2.386 1 67.19 ? C20 LAR 387 B 1 HETATM 28 C C21 LAR . . . H 4 -36.426 143.166 -0.811 1 76.15 ? C21 LAR 387 B 1 HETATM 29 C C22 LAR . . . H 4 -29.526 148.786 -1.438 1 77.07 ? C22 LAR 387 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #