data_1RFQ # _model_server_result.job_id vCE9aQ468XzbUQWcUVN5oA _model_server_result.datetime_utc '2024-11-16 13:44:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":388}' # _entry.id 1RFQ # _exptl.entry_id 1RFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RFQ _cell.length_a 101.5 _cell.length_b 101.5 _cell.length_c 104.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 GLN 137 A GLN 137 1_555 C MG MG . A MG 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc2 D O3G ATP . A ATP 376 1_555 C MG MG . A MG 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 D O2B ATP . A ATP 376 1_555 C MG MG . A MG 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc4 B OE1 GLN 137 B GLN 137 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc5 G O3G ATP . B ATP 386 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc6 G O2B ATP . B ATP 386 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc7 G O1G ATP . B ATP 386 1_555 F MG MG . B MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RFQ _atom_sites.fract_transf_matrix[1][1] 0.009852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 378 378 MG MG2 . D 3 ATP A 1 376 376 ATP ATP . E 4 LAR A 1 377 377 LAR LAR . F 2 MG B 1 388 378 MG MG2 . G 3 ATP B 1 386 376 ATP ATP . H 4 LAR B 1 387 377 LAR LAR . I 5 HOH A 1 379 1 HOH HOH . I 5 HOH A 2 380 4 HOH HOH . I 5 HOH A 3 381 6 HOH HOH . I 5 HOH A 4 382 8 HOH HOH . I 5 HOH A 5 383 9 HOH HOH . I 5 HOH A 6 384 10 HOH HOH . I 5 HOH A 7 385 11 HOH HOH . I 5 HOH A 8 386 14 HOH HOH . I 5 HOH A 9 387 15 HOH HOH . I 5 HOH A 10 388 17 HOH HOH . I 5 HOH A 11 389 18 HOH HOH . I 5 HOH A 12 390 22 HOH HOH . I 5 HOH A 13 391 23 HOH HOH . I 5 HOH A 14 392 24 HOH HOH . I 5 HOH A 15 393 26 HOH HOH . I 5 HOH A 16 394 30 HOH HOH . I 5 HOH A 17 395 31 HOH HOH . I 5 HOH A 18 396 32 HOH HOH . I 5 HOH A 19 397 33 HOH HOH . I 5 HOH A 20 398 34 HOH HOH . I 5 HOH A 21 399 35 HOH HOH . I 5 HOH A 22 400 42 HOH HOH . J 5 HOH B 1 389 2 HOH HOH . J 5 HOH B 2 390 3 HOH HOH . J 5 HOH B 3 391 5 HOH HOH . J 5 HOH B 4 392 7 HOH HOH . J 5 HOH B 5 393 12 HOH HOH . J 5 HOH B 6 394 13 HOH HOH . J 5 HOH B 7 395 16 HOH HOH . J 5 HOH B 8 396 19 HOH HOH . J 5 HOH B 9 397 20 HOH HOH . J 5 HOH B 10 398 21 HOH HOH . J 5 HOH B 11 399 25 HOH HOH . J 5 HOH B 12 400 27 HOH HOH . J 5 HOH B 13 401 28 HOH HOH . J 5 HOH B 14 402 29 HOH HOH . J 5 HOH B 15 403 36 HOH HOH . J 5 HOH B 16 404 37 HOH HOH . J 5 HOH B 17 405 38 HOH HOH . J 5 HOH B 18 406 39 HOH HOH . J 5 HOH B 19 407 40 HOH HOH . J 5 HOH B 20 408 41 HOH HOH . J 5 HOH B 21 409 43 HOH HOH . J 5 HOH B 22 410 44 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -30.185 _atom_site.Cartn_y 135.752 _atom_site.Cartn_z 10.429 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 388 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #