data_1RFZ # _model_server_result.job_id PWT7ohHIOXRfyffF8ZHsMw _model_server_result.datetime_utc '2025-03-09 04:14:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":404}' # _entry.id 1RFZ # _exptl.entry_id 1RFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RFZ _cell.length_a 80.824 _cell.length_b 80.824 _cell.length_c 236.904 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N SER 5 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C ILE 8 A ILE 5 1_555 A N MSE 9 A MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 9 A MSE 6 1_555 A N ASN 10 A ASN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C THR 46 A THR 43 1_555 A N MSE 47 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 47 A MSE 44 1_555 A N GLU 48 A GLU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C MSE 4 B MSE 1 1_555 B N SER 5 B SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale9 B C ILE 8 B ILE 5 1_555 B N MSE 9 B MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 B C MSE 9 B MSE 6 1_555 B N ASN 10 B ASN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C THR 46 B THR 43 1_555 B N MSE 47 B MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 47 B MSE 44 1_555 B N GLU 48 B GLU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 C C ILE 8 C ILE 5 1_555 C N MSE 9 C MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 C C MSE 9 C MSE 6 1_555 C N ASN 10 C ASN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 C C THR 46 C THR 43 1_555 C N MSE 47 C MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 C C MSE 47 C MSE 44 1_555 C N GLU 48 C GLU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale17 D C THR 46 D THR 43 1_555 D N MSE 47 D MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 D C MSE 47 D MSE 44 1_555 D N GLU 48 D GLU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 1RFZ _atom_sites.fract_transf_matrix[1][1] 0.012373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 401 401 SO4 SO4 . F 2 SO4 A 1 405 405 SO4 SO4 . G 2 SO4 A 1 406 406 SO4 SO4 . H 2 SO4 B 1 402 402 SO4 SO4 . I 2 SO4 C 1 403 403 SO4 SO4 . J 2 SO4 C 1 407 407 SO4 SO4 . K 2 SO4 D 1 404 404 SO4 SO4 . L 3 HOH A 1 407 7 HOH HOH . L 3 HOH A 2 408 9 HOH HOH . L 3 HOH A 3 409 10 HOH HOH . L 3 HOH A 4 410 11 HOH HOH . L 3 HOH A 5 411 14 HOH HOH . L 3 HOH A 6 412 16 HOH HOH . L 3 HOH A 7 413 21 HOH HOH . L 3 HOH A 8 414 31 HOH HOH . L 3 HOH A 9 415 32 HOH HOH . L 3 HOH A 10 416 34 HOH HOH . L 3 HOH A 11 417 35 HOH HOH . L 3 HOH A 12 418 37 HOH HOH . L 3 HOH A 13 419 52 HOH HOH . L 3 HOH A 14 420 63 HOH HOH . L 3 HOH A 15 421 74 HOH HOH . L 3 HOH A 16 422 83 HOH HOH . L 3 HOH A 17 423 84 HOH HOH . L 3 HOH A 18 424 85 HOH HOH . L 3 HOH A 19 425 86 HOH HOH . L 3 HOH A 20 426 87 HOH HOH . L 3 HOH A 21 427 88 HOH HOH . L 3 HOH A 22 428 89 HOH HOH . L 3 HOH A 23 429 91 HOH HOH . L 3 HOH A 24 430 92 HOH HOH . L 3 HOH A 25 431 95 HOH HOH . L 3 HOH A 26 432 108 HOH HOH . L 3 HOH A 27 433 110 HOH HOH . L 3 HOH A 28 434 117 HOH HOH . M 3 HOH B 1 403 1 HOH HOH . M 3 HOH B 2 404 2 HOH HOH . M 3 HOH B 3 405 3 HOH HOH . M 3 HOH B 4 406 4 HOH HOH . M 3 HOH B 5 407 5 HOH HOH . M 3 HOH B 6 408 8 HOH HOH . M 3 HOH B 7 409 15 HOH HOH . M 3 HOH B 8 410 18 HOH HOH . M 3 HOH B 9 411 19 HOH HOH . M 3 HOH B 10 412 27 HOH HOH . M 3 HOH B 11 413 39 HOH HOH . M 3 HOH B 12 414 40 HOH HOH . M 3 HOH B 13 415 41 HOH HOH . M 3 HOH B 14 416 42 HOH HOH . M 3 HOH B 15 417 43 HOH HOH . M 3 HOH B 16 418 44 HOH HOH . M 3 HOH B 17 419 46 HOH HOH . M 3 HOH B 18 420 48 HOH HOH . M 3 HOH B 19 421 56 HOH HOH . M 3 HOH B 20 422 62 HOH HOH . M 3 HOH B 21 423 64 HOH HOH . M 3 HOH B 22 424 68 HOH HOH . M 3 HOH B 23 425 69 HOH HOH . M 3 HOH B 24 426 70 HOH HOH . M 3 HOH B 25 427 72 HOH HOH . M 3 HOH B 26 428 73 HOH HOH . M 3 HOH B 27 429 75 HOH HOH . M 3 HOH B 28 430 76 HOH HOH . M 3 HOH B 29 431 77 HOH HOH . M 3 HOH B 30 432 78 HOH HOH . M 3 HOH B 31 433 79 HOH HOH . M 3 HOH B 32 434 80 HOH HOH . M 3 HOH B 33 435 81 HOH HOH . M 3 HOH B 34 436 96 HOH HOH . M 3 HOH B 35 437 97 HOH HOH . M 3 HOH B 36 438 98 HOH HOH . M 3 HOH B 37 439 99 HOH HOH . M 3 HOH B 38 440 100 HOH HOH . M 3 HOH B 39 441 101 HOH HOH . M 3 HOH B 40 442 102 HOH HOH . M 3 HOH B 41 443 104 HOH HOH . M 3 HOH B 42 444 105 HOH HOH . M 3 HOH B 43 445 115 HOH HOH . M 3 HOH B 44 446 116 HOH HOH . N 3 HOH C 1 408 6 HOH HOH . N 3 HOH C 2 409 13 HOH HOH . N 3 HOH C 3 410 17 HOH HOH . N 3 HOH C 4 411 20 HOH HOH . N 3 HOH C 5 412 22 HOH HOH . N 3 HOH C 6 413 23 HOH HOH . N 3 HOH C 7 414 24 HOH HOH . N 3 HOH C 8 415 25 HOH HOH . N 3 HOH C 9 416 28 HOH HOH . N 3 HOH C 10 417 29 HOH HOH . N 3 HOH C 11 418 30 HOH HOH . N 3 HOH C 12 419 38 HOH HOH . N 3 HOH C 13 420 45 HOH HOH . N 3 HOH C 14 421 47 HOH HOH . N 3 HOH C 15 422 49 HOH HOH . N 3 HOH C 16 423 50 HOH HOH . N 3 HOH C 17 424 51 HOH HOH . N 3 HOH C 18 425 53 HOH HOH . N 3 HOH C 19 426 54 HOH HOH . N 3 HOH C 20 427 55 HOH HOH . N 3 HOH C 21 428 57 HOH HOH . N 3 HOH C 22 429 59 HOH HOH . N 3 HOH C 23 430 60 HOH HOH . N 3 HOH C 24 431 65 HOH HOH . N 3 HOH C 25 432 93 HOH HOH . N 3 HOH C 26 433 103 HOH HOH . N 3 HOH C 27 434 106 HOH HOH . N 3 HOH C 28 435 107 HOH HOH . N 3 HOH C 29 436 109 HOH HOH . N 3 HOH C 30 437 111 HOH HOH . N 3 HOH C 31 438 112 HOH HOH . O 3 HOH D 1 405 12 HOH HOH . O 3 HOH D 2 406 26 HOH HOH . O 3 HOH D 3 407 33 HOH HOH . O 3 HOH D 4 408 36 HOH HOH . O 3 HOH D 5 409 58 HOH HOH . O 3 HOH D 6 410 61 HOH HOH . O 3 HOH D 7 411 66 HOH HOH . O 3 HOH D 8 412 67 HOH HOH . O 3 HOH D 9 413 71 HOH HOH . O 3 HOH D 10 414 82 HOH HOH . O 3 HOH D 11 415 90 HOH HOH . O 3 HOH D 12 416 94 HOH HOH . O 3 HOH D 13 417 113 HOH HOH . O 3 HOH D 14 418 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . K 2 29.93 8.909 -10.692 1 82.71 ? S SO4 404 D 1 HETATM 2 O O1 SO4 . . . K 2 28.602 8.678 -11.361 1 77.92 ? O1 SO4 404 D 1 HETATM 3 O O2 SO4 . . . K 2 31.017 8.829 -11.736 1 77.77 ? O2 SO4 404 D 1 HETATM 4 O O3 SO4 . . . K 2 30.135 7.861 -9.631 1 77.93 ? O3 SO4 404 D 1 HETATM 5 O O4 SO4 . . . K 2 29.96 10.258 -10.036 1 78.41 ? O4 SO4 404 D 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #