data_1RG1
#
_model_server_result.job_id            nRYl-ZQRU7EGCFWQIagXKQ 
_model_server_result.datetime_utc      '2024-11-06 21:29:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rg1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":999}' 
#
_entry.id    1RG1 
#
_exptl.entry_id    1RG1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              202.34 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPERMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RG1 
_cell.length_a            49.8 
_cell.length_b            104.711 
_cell.length_c            193.751 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RG1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,J,L 1 1 
B,D,H,I,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O3' DT 4 D DT 806 1_555 E V VO4 . A VO4 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc2 B O3' DT 4 F DT 806 1_555 H V VO4 . B VO4 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc3 C NE2 HIS 140 A HIS 263 1_555 E V VO4 . A VO4 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc4 E V VO4 . A VO4 699 1_555 G O4 OTS . A OTS 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc5 D NE2 HIS 140 B HIS 263 1_555 H V VO4 . B VO4 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc6 H V VO4 . B VO4 699 1_555 I O4 OTS . B OTS 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C10 H26 N4' 
_chem_comp.formula_weight    202.34 
_chem_comp.id                SPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPERMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SPM sing 426 n n 
N1 HN11 SPM sing 427 n n 
N1 HN12 SPM sing 428 n n 
C2 C3 SPM sing 429 n n 
C2 H21 SPM sing 430 n n 
C2 H22 SPM sing 431 n n 
C3 C4 SPM sing 432 n n 
C3 H31 SPM sing 433 n n 
C3 H32 SPM sing 434 n n 
C4 N5 SPM sing 435 n n 
C4 H41 SPM sing 436 n n 
C4 H42 SPM sing 437 n n 
N5 C6 SPM sing 438 n n 
N5 HN5 SPM sing 439 n n 
C6 C7 SPM sing 440 n n 
C6 H61 SPM sing 441 n n 
C6 H62 SPM sing 442 n n 
C7 C8 SPM sing 443 n n 
C7 H71 SPM sing 444 n n 
C7 H72 SPM sing 445 n n 
C8 C9 SPM sing 446 n n 
C8 H81 SPM sing 447 n n 
C8 H82 SPM sing 448 n n 
C9 N10 SPM sing 449 n n 
C9 H91 SPM sing 450 n n 
C9 H92 SPM sing 451 n n 
N10 C11 SPM sing 452 n n 
N10 HN0 SPM sing 453 n n 
C11 C12 SPM sing 454 n n 
C11 H111 SPM sing 455 n n 
C11 H112 SPM sing 456 n n 
C12 C13 SPM sing 457 n n 
C12 H121 SPM sing 458 n n 
C12 H122 SPM sing 459 n n 
C13 N14 SPM sing 460 n n 
C13 H131 SPM sing 461 n n 
C13 H132 SPM sing 462 n n 
N14 HN41 SPM sing 463 n n 
N14 HN42 SPM sing 464 n n 
#
_atom_sites.entry_id                     1RG1 
_atom_sites.fract_transf_matrix[1][1]    0.02008 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 VO4 A 1 699 699 VO4 VO4 . 
F 4 SPM A 1 999 999 SPM SPM . 
G 5 OTS A 1 997 997 OTS OTS . 
H 3 VO4 B 1 699 699 VO4 VO4 . 
I 5 OTS B 1 998 998 OTS OTS . 
J 6 HOH D 1 675 675 HOH HOH . 
J 6 HOH D 2 875 875 HOH HOH . 
K 6 HOH F 1 638 638 HOH HOH . 
K 6 HOH F 2 920 920 HOH HOH . 
L 6 HOH A 1 616 616 HOH HOH . 
L 6 HOH A 2 626 626 HOH HOH . 
L 6 HOH A 3 627 627 HOH HOH . 
L 6 HOH A 4 629 629 HOH HOH . 
L 6 HOH A 5 633 633 HOH HOH . 
L 6 HOH A 6 636 636 HOH HOH . 
L 6 HOH A 7 639 639 HOH HOH . 
L 6 HOH A 8 642 642 HOH HOH . 
L 6 HOH A 9 647 647 HOH HOH . 
L 6 HOH A 10 653 653 HOH HOH . 
L 6 HOH A 11 664 664 HOH HOH . 
L 6 HOH A 12 667 667 HOH HOH . 
L 6 HOH A 13 672 672 HOH HOH . 
L 6 HOH A 14 677 677 HOH HOH . 
L 6 HOH A 15 678 678 HOH HOH . 
L 6 HOH A 16 679 679 HOH HOH . 
L 6 HOH A 17 680 680 HOH HOH . 
L 6 HOH A 18 681 681 HOH HOH . 
L 6 HOH A 19 684 684 HOH HOH . 
L 6 HOH A 20 687 687 HOH HOH . 
L 6 HOH A 21 688 688 HOH HOH . 
L 6 HOH A 22 689 689 HOH HOH . 
L 6 HOH A 23 690 690 HOH HOH . 
L 6 HOH A 24 691 691 HOH HOH . 
L 6 HOH A 25 692 692 HOH HOH . 
L 6 HOH A 26 694 694 HOH HOH . 
L 6 HOH A 27 700 700 HOH HOH . 
L 6 HOH A 28 701 701 HOH HOH . 
L 6 HOH A 29 702 702 HOH HOH . 
L 6 HOH A 30 706 706 HOH HOH . 
L 6 HOH A 31 708 708 HOH HOH . 
L 6 HOH A 32 712 712 HOH HOH . 
L 6 HOH A 33 713 713 HOH HOH . 
L 6 HOH A 34 720 720 HOH HOH . 
L 6 HOH A 35 722 722 HOH HOH . 
L 6 HOH A 36 727 727 HOH HOH . 
L 6 HOH A 37 732 732 HOH HOH . 
L 6 HOH A 38 752 752 HOH HOH . 
L 6 HOH A 39 755 755 HOH HOH . 
L 6 HOH A 40 758 758 HOH HOH . 
L 6 HOH A 41 763 763 HOH HOH . 
L 6 HOH A 42 766 766 HOH HOH . 
L 6 HOH A 43 768 768 HOH HOH . 
L 6 HOH A 44 770 770 HOH HOH . 
L 6 HOH A 45 776 776 HOH HOH . 
L 6 HOH A 46 781 781 HOH HOH . 
L 6 HOH A 47 789 789 HOH HOH . 
L 6 HOH A 48 794 794 HOH HOH . 
L 6 HOH A 49 803 803 HOH HOH . 
L 6 HOH A 50 833 833 HOH HOH . 
L 6 HOH A 51 852 852 HOH HOH . 
L 6 HOH A 52 853 853 HOH HOH . 
L 6 HOH A 53 854 854 HOH HOH . 
L 6 HOH A 54 855 855 HOH HOH . 
L 6 HOH A 55 856 856 HOH HOH . 
L 6 HOH A 56 857 857 HOH HOH . 
L 6 HOH A 57 858 858 HOH HOH . 
L 6 HOH A 58 859 859 HOH HOH . 
L 6 HOH A 59 860 860 HOH HOH . 
L 6 HOH A 60 861 861 HOH HOH . 
L 6 HOH A 61 862 862 HOH HOH . 
L 6 HOH A 62 865 865 HOH HOH . 
L 6 HOH A 63 867 867 HOH HOH . 
L 6 HOH A 64 872 872 HOH HOH . 
L 6 HOH A 65 873 873 HOH HOH . 
L 6 HOH A 66 874 874 HOH HOH . 
L 6 HOH A 67 876 876 HOH HOH . 
L 6 HOH A 68 901 901 HOH HOH . 
L 6 HOH A 69 908 908 HOH HOH . 
L 6 HOH A 70 910 910 HOH HOH . 
L 6 HOH A 71 930 930 HOH HOH . 
L 6 HOH A 72 933 933 HOH HOH . 
L 6 HOH A 73 934 934 HOH HOH . 
L 6 HOH A 74 940 940 HOH HOH . 
L 6 HOH A 75 943 943 HOH HOH . 
L 6 HOH A 76 945 945 HOH HOH . 
L 6 HOH A 77 948 948 HOH HOH . 
L 6 HOH A 78 949 949 HOH HOH . 
L 6 HOH A 79 1015 1015 HOH HOH . 
L 6 HOH A 80 1067 1067 HOH HOH . 
L 6 HOH A 81 1103 1103 HOH HOH . 
L 6 HOH A 82 1105 1105 HOH HOH . 
L 6 HOH A 83 1114 1114 HOH HOH . 
L 6 HOH A 84 1117 1117 HOH HOH . 
L 6 HOH A 85 1131 1131 HOH HOH . 
L 6 HOH A 86 1132 1132 HOH HOH . 
L 6 HOH A 87 1133 1133 HOH HOH . 
M 6 HOH B 1 613 613 HOH HOH . 
M 6 HOH B 2 614 614 HOH HOH . 
M 6 HOH B 3 615 615 HOH HOH . 
M 6 HOH B 4 617 617 HOH HOH . 
M 6 HOH B 5 618 618 HOH HOH . 
M 6 HOH B 6 622 622 HOH HOH . 
M 6 HOH B 7 624 624 HOH HOH . 
M 6 HOH B 8 625 625 HOH HOH . 
M 6 HOH B 9 628 628 HOH HOH . 
M 6 HOH B 10 631 631 HOH HOH . 
M 6 HOH B 11 632 632 HOH HOH . 
M 6 HOH B 12 634 634 HOH HOH . 
M 6 HOH B 13 635 635 HOH HOH . 
M 6 HOH B 14 640 640 HOH HOH . 
M 6 HOH B 15 641 641 HOH HOH . 
M 6 HOH B 16 643 643 HOH HOH . 
M 6 HOH B 17 645 645 HOH HOH . 
M 6 HOH B 18 648 648 HOH HOH . 
M 6 HOH B 19 649 649 HOH HOH . 
M 6 HOH B 20 651 651 HOH HOH . 
M 6 HOH B 21 652 652 HOH HOH . 
M 6 HOH B 22 654 654 HOH HOH . 
M 6 HOH B 23 661 661 HOH HOH . 
M 6 HOH B 24 663 663 HOH HOH . 
M 6 HOH B 25 668 668 HOH HOH . 
M 6 HOH B 26 669 669 HOH HOH . 
M 6 HOH B 27 673 673 HOH HOH . 
M 6 HOH B 28 674 674 HOH HOH . 
M 6 HOH B 29 676 676 HOH HOH . 
M 6 HOH B 30 682 682 HOH HOH . 
M 6 HOH B 31 686 686 HOH HOH . 
M 6 HOH B 32 693 693 HOH HOH . 
M 6 HOH B 33 695 695 HOH HOH . 
M 6 HOH B 34 703 703 HOH HOH . 
M 6 HOH B 35 704 704 HOH HOH . 
M 6 HOH B 36 714 714 HOH HOH . 
M 6 HOH B 37 723 723 HOH HOH . 
M 6 HOH B 38 726 726 HOH HOH . 
M 6 HOH B 39 730 730 HOH HOH . 
M 6 HOH B 40 731 731 HOH HOH . 
M 6 HOH B 41 737 737 HOH HOH . 
M 6 HOH B 42 739 739 HOH HOH . 
M 6 HOH B 43 745 745 HOH HOH . 
M 6 HOH B 44 749 749 HOH HOH . 
M 6 HOH B 45 756 756 HOH HOH . 
M 6 HOH B 46 765 765 HOH HOH . 
M 6 HOH B 47 767 767 HOH HOH . 
M 6 HOH B 48 777 777 HOH HOH . 
M 6 HOH B 49 798 798 HOH HOH . 
M 6 HOH B 50 812 812 HOH HOH . 
M 6 HOH B 51 819 819 HOH HOH . 
M 6 HOH B 52 836 836 HOH HOH . 
M 6 HOH B 53 851 851 HOH HOH . 
M 6 HOH B 54 864 864 HOH HOH . 
M 6 HOH B 55 881 881 HOH HOH . 
M 6 HOH B 56 882 882 HOH HOH . 
M 6 HOH B 57 883 883 HOH HOH . 
M 6 HOH B 58 886 886 HOH HOH . 
M 6 HOH B 59 887 887 HOH HOH . 
M 6 HOH B 60 888 888 HOH HOH . 
M 6 HOH B 61 889 889 HOH HOH . 
M 6 HOH B 62 890 890 HOH HOH . 
M 6 HOH B 63 892 892 HOH HOH . 
M 6 HOH B 64 893 893 HOH HOH . 
M 6 HOH B 65 894 894 HOH HOH . 
M 6 HOH B 66 895 895 HOH HOH . 
M 6 HOH B 67 897 897 HOH HOH . 
M 6 HOH B 68 899 899 HOH HOH . 
M 6 HOH B 69 902 902 HOH HOH . 
M 6 HOH B 70 916 916 HOH HOH . 
M 6 HOH B 71 917 917 HOH HOH . 
M 6 HOH B 72 923 923 HOH HOH . 
M 6 HOH B 73 926 926 HOH HOH . 
M 6 HOH B 74 928 928 HOH HOH . 
M 6 HOH B 75 942 942 HOH HOH . 
M 6 HOH B 76 957 957 HOH HOH . 
M 6 HOH B 77 960 960 HOH HOH . 
M 6 HOH B 78 961 961 HOH HOH . 
M 6 HOH B 79 964 964 HOH HOH . 
M 6 HOH B 80 965 965 HOH HOH . 
M 6 HOH B 81 966 966 HOH HOH . 
M 6 HOH B 82 968 968 HOH HOH . 
M 6 HOH B 83 969 969 HOH HOH . 
M 6 HOH B 84 970 970 HOH HOH . 
M 6 HOH B 85 974 974 HOH HOH . 
M 6 HOH B 86 975 975 HOH HOH . 
M 6 HOH B 87 982 982 HOH HOH . 
M 6 HOH B 88 1004 1004 HOH HOH . 
M 6 HOH B 89 1022 1022 HOH HOH . 
M 6 HOH B 90 1026 1026 HOH HOH . 
M 6 HOH B 91 1027 1027 HOH HOH . 
M 6 HOH B 92 1042 1042 HOH HOH . 
M 6 HOH B 93 1050 1050 HOH HOH . 
M 6 HOH B 94 1054 1054 HOH HOH . 
M 6 HOH B 95 1066 1066 HOH HOH . 
M 6 HOH B 96 1071 1071 HOH HOH . 
M 6 HOH B 97 1077 1077 HOH HOH . 
M 6 HOH B 98 1084 1084 HOH HOH . 
M 6 HOH B 99 1098 1098 HOH HOH . 
M 6 HOH B 100 1124 1124 HOH HOH . 
M 6 HOH B 101 1126 1126 HOH HOH . 
M 6 HOH B 102 1130 1130 HOH HOH . 
M 6 HOH B 103 1134 1134 HOH HOH . 
M 6 HOH B 104 1135 1135 HOH HOH . 
M 6 HOH B 105 1136 1136 HOH HOH . 
M 6 HOH B 106 1137 1137 HOH HOH . 
M 6 HOH B 107 1138 1138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SPM . . . F 4 -0.036 57.277 -22.795 1 35.67 ? N1 SPM 999 A 1 
HETATM 2 C C2 SPM . . . F 4 0.24 56.507 -21.578 1 32.74 ? C2 SPM 999 A 1 
HETATM 3 C C3 SPM . . . F 4 1.238 57.239 -20.71 1 32.4 ? C3 SPM 999 A 1 
HETATM 4 C C4 SPM . . . F 4 2.174 56.288 -19.956 1 35.88 ? C4 SPM 999 A 1 
HETATM 5 N N5 SPM . . . F 4 1.976 56.375 -18.513 1 35.64 ? N5 SPM 999 A 1 
HETATM 6 C C6 SPM . . . F 4 2.581 55.43 -17.607 1 37.63 ? C6 SPM 999 A 1 
HETATM 7 C C7 SPM . . . F 4 3.941 55.91 -17.12 1 40.22 ? C7 SPM 999 A 1 
HETATM 8 C C8 SPM . . . F 4 4.333 55.221 -15.826 1 42.71 ? C8 SPM 999 A 1 
HETATM 9 C C9 SPM . . . F 4 5.188 53.983 -16.068 1 45.24 ? C9 SPM 999 A 1 
HETATM 10 N N10 SPM . . . F 4 6.018 53.668 -14.914 1 46.1 ? N10 SPM 999 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           10 
#