data_1RG7 # _model_server_result.job_id L2AnWsmkhSEndaohBbndMg _model_server_result.datetime_utc '2024-11-05 08:30:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":161}' # _entry.id 1RG7 # _exptl.entry_id 1RG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RG7 _cell.length_a 37.036 _cell.length_b 62.561 _cell.length_c 65.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 237 n y N1 C8A MTX sing 238 n y C2 NA2 MTX sing 239 n n C2 N3 MTX sing 240 n y NA2 HN21 MTX sing 241 n n NA2 HN22 MTX sing 242 n n N3 C4 MTX doub 243 n y C4 NA4 MTX sing 244 n n C4 C4A MTX sing 245 n y NA4 HN41 MTX sing 246 n n NA4 HN42 MTX sing 247 n n C4A N5 MTX sing 248 n y C4A C8A MTX doub 249 n y N5 C6 MTX doub 250 n y C6 C7 MTX sing 251 n y C6 C9 MTX sing 252 n n C7 N8 MTX doub 253 n y C7 H7 MTX sing 254 n n N8 C8A MTX sing 255 n y C9 N10 MTX sing 256 n n C9 H91 MTX sing 257 n n C9 H92 MTX sing 258 n n N10 CM MTX sing 259 n n N10 C14 MTX sing 260 n n CM HM1 MTX sing 261 n n CM HM2 MTX sing 262 n n CM HM3 MTX sing 263 n n C11 C12 MTX doub 264 n y C11 C16 MTX sing 265 n y C11 C MTX sing 266 n n C12 C13 MTX sing 267 n y C12 H12 MTX sing 268 n n C13 C14 MTX doub 269 n y C13 H13 MTX sing 270 n n C14 C15 MTX sing 271 n y C15 C16 MTX doub 272 n y C15 H15 MTX sing 273 n n C16 H16 MTX sing 274 n n C O MTX doub 275 n n C N MTX sing 276 n n N CA MTX sing 277 n n N HN MTX sing 278 n n CA CT MTX sing 279 n n CA CB MTX sing 280 n n CA HA MTX sing 281 n n CT O1 MTX doub 282 n n CT O2 MTX sing 283 n n O2 HO2 MTX sing 284 n n CB CG MTX sing 285 n n CB HB1 MTX sing 286 n n CB HB2 MTX sing 287 n n CG CD MTX sing 288 n n CG HG1 MTX sing 289 n n CG HG2 MTX sing 290 n n CD OE1 MTX doub 291 n n CD OE2 MTX sing 292 n n OE2 HOE2 MTX sing 293 n n # _atom_sites.entry_id 1RG7 _atom_sites.fract_transf_matrix[1][1] 0.027001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 161 161 MTX MTX . C 3 HOH A 1 200 200 HOH HOH . C 3 HOH A 2 201 201 HOH HOH . C 3 HOH A 3 202 202 HOH HOH . C 3 HOH A 4 203 203 HOH HOH . C 3 HOH A 5 204 204 HOH HOH . C 3 HOH A 6 206 206 HOH HOH . C 3 HOH A 7 207 207 HOH HOH . C 3 HOH A 8 208 208 HOH HOH . C 3 HOH A 9 209 209 HOH HOH . C 3 HOH A 10 210 210 HOH HOH . C 3 HOH A 11 211 211 HOH HOH . C 3 HOH A 12 212 212 HOH HOH . C 3 HOH A 13 213 213 HOH HOH . C 3 HOH A 14 217 217 HOH HOH . C 3 HOH A 15 218 218 HOH HOH . C 3 HOH A 16 220 220 HOH HOH . C 3 HOH A 17 221 221 HOH HOH . C 3 HOH A 18 222 222 HOH HOH . C 3 HOH A 19 228 228 HOH HOH . C 3 HOH A 20 230 230 HOH HOH . C 3 HOH A 21 232 232 HOH HOH . C 3 HOH A 22 234 234 HOH HOH . C 3 HOH A 23 235 235 HOH HOH . C 3 HOH A 24 236 236 HOH HOH . C 3 HOH A 25 237 237 HOH HOH . C 3 HOH A 26 239 239 HOH HOH . C 3 HOH A 27 241 241 HOH HOH . C 3 HOH A 28 242 242 HOH HOH . C 3 HOH A 29 244 244 HOH HOH . C 3 HOH A 30 245 245 HOH HOH . C 3 HOH A 31 246 246 HOH HOH . C 3 HOH A 32 247 247 HOH HOH . C 3 HOH A 33 248 248 HOH HOH . C 3 HOH A 34 249 249 HOH HOH . C 3 HOH A 35 250 250 HOH HOH . C 3 HOH A 36 251 251 HOH HOH . C 3 HOH A 37 252 252 HOH HOH . C 3 HOH A 38 253 253 HOH HOH . C 3 HOH A 39 254 254 HOH HOH . C 3 HOH A 40 255 255 HOH HOH . C 3 HOH A 41 256 256 HOH HOH . C 3 HOH A 42 257 257 HOH HOH . C 3 HOH A 43 258 258 HOH HOH . C 3 HOH A 44 259 259 HOH HOH . C 3 HOH A 45 260 260 HOH HOH . C 3 HOH A 46 261 261 HOH HOH . C 3 HOH A 47 262 262 HOH HOH . C 3 HOH A 48 264 264 HOH HOH . C 3 HOH A 49 265 265 HOH HOH . C 3 HOH A 50 266 266 HOH HOH . C 3 HOH A 51 267 267 HOH HOH . C 3 HOH A 52 268 268 HOH HOH . C 3 HOH A 53 270 270 HOH HOH . C 3 HOH A 54 271 271 HOH HOH . C 3 HOH A 55 272 272 HOH HOH . C 3 HOH A 56 273 273 HOH HOH . C 3 HOH A 57 274 274 HOH HOH . C 3 HOH A 58 275 275 HOH HOH . C 3 HOH A 59 276 276 HOH HOH . C 3 HOH A 60 277 277 HOH HOH . C 3 HOH A 61 278 278 HOH HOH . C 3 HOH A 62 279 279 HOH HOH . C 3 HOH A 63 280 280 HOH HOH . C 3 HOH A 64 282 282 HOH HOH . C 3 HOH A 65 285 285 HOH HOH . C 3 HOH A 66 286 286 HOH HOH . C 3 HOH A 67 287 287 HOH HOH . C 3 HOH A 68 288 288 HOH HOH . C 3 HOH A 69 289 289 HOH HOH . C 3 HOH A 70 290 290 HOH HOH . C 3 HOH A 71 291 291 HOH HOH . C 3 HOH A 72 292 292 HOH HOH . C 3 HOH A 73 293 293 HOH HOH . C 3 HOH A 74 294 294 HOH HOH . C 3 HOH A 75 295 295 HOH HOH . C 3 HOH A 76 296 296 HOH HOH . C 3 HOH A 77 297 297 HOH HOH . C 3 HOH A 78 298 298 HOH HOH . C 3 HOH A 79 299 299 HOH HOH . C 3 HOH A 80 300 300 HOH HOH . C 3 HOH A 81 301 301 HOH HOH . C 3 HOH A 82 303 303 HOH HOH . C 3 HOH A 83 304 304 HOH HOH . C 3 HOH A 84 305 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . B 2 1.904 24.187 25.726 1 6.13 ? N1 MTX 161 A 1 HETATM 2 C C2 MTX . . . B 2 2.728 25.163 25.445 1 14.99 ? C2 MTX 161 A 1 HETATM 3 N NA2 MTX . . . B 2 2.696 26.215 26.158 1 6.47 ? NA2 MTX 161 A 1 HETATM 4 N N3 MTX . . . B 2 3.621 25.032 24.325 1 7.68 ? N3 MTX 161 A 1 HETATM 5 C C4 MTX . . . B 2 3.675 23.949 23.52 1 13.29 ? C4 MTX 161 A 1 HETATM 6 N NA4 MTX . . . B 2 4.498 23.882 22.531 1 9.4 ? NA4 MTX 161 A 1 HETATM 7 C C4A MTX . . . B 2 2.715 22.908 23.868 1 9.26 ? C4A MTX 161 A 1 HETATM 8 N N5 MTX . . . B 2 2.705 21.831 23.133 1 13.05 ? N5 MTX 161 A 1 HETATM 9 C C6 MTX . . . B 2 1.852 20.869 23.544 1 15.99 ? C6 MTX 161 A 1 HETATM 10 C C7 MTX . . . B 2 1.063 21.069 24.683 1 21.31 ? C7 MTX 161 A 1 HETATM 11 N N8 MTX . . . B 2 1.045 22.133 25.417 1 11.44 ? N8 MTX 161 A 1 HETATM 12 C C8A MTX . . . B 2 1.903 23.057 24.949 1 15.02 ? C8A MTX 161 A 1 HETATM 13 C C9 MTX . . . B 2 1.861 19.638 22.752 1 19.18 ? C9 MTX 161 A 1 HETATM 14 N N10 MTX . . . B 2 0.644 18.839 22.957 1 12.38 ? N10 MTX 161 A 1 HETATM 15 C CM MTX . . . B 2 0.833 17.434 23.404 1 7.03 ? CM MTX 161 A 1 HETATM 16 C C11 MTX . . . B 2 -3.192 20.244 22.102 1 21.27 ? C11 MTX 161 A 1 HETATM 17 C C12 MTX . . . B 2 -2.971 19.004 22.81 1 12.33 ? C12 MTX 161 A 1 HETATM 18 C C13 MTX . . . B 2 -1.69 18.582 23.067 1 8.24 ? C13 MTX 161 A 1 HETATM 19 C C14 MTX . . . B 2 -0.616 19.376 22.634 1 8.23 ? C14 MTX 161 A 1 HETATM 20 C C15 MTX . . . B 2 -0.804 20.567 21.97 1 18.16 ? C15 MTX 161 A 1 HETATM 21 C C16 MTX . . . B 2 -2.115 21.022 21.697 1 1 ? C16 MTX 161 A 1 HETATM 22 C C MTX . . . B 2 -4.489 20.755 21.816 1 18.74 ? C MTX 161 A 1 HETATM 23 O O MTX . . . B 2 -5.525 20.064 21.837 1 32.9 ? O MTX 161 A 1 HETATM 24 N N MTX . . . B 2 -4.631 22.049 21.774 1 16.38 ? N MTX 161 A 1 HETATM 25 C CA MTX . . . B 2 -5.922 22.571 21.223 1 15.18 ? CA MTX 161 A 1 HETATM 26 C CT MTX . . . B 2 -5.722 23.606 20.174 1 12.15 ? CT MTX 161 A 1 HETATM 27 O O1 MTX . . . B 2 -4.613 24.19 20.099 1 16.18 ? O1 MTX 161 A 1 HETATM 28 O O2 MTX . . . B 2 -6.752 23.88 19.479 1 25.26 ? O2 MTX 161 A 1 HETATM 29 C CB MTX . . . B 2 -6.59 23.398 22.329 1 32.14 ? CB MTX 161 A 1 HETATM 30 C CG MTX . . . B 2 -8.031 22.796 22.622 1 51.81 ? CG MTX 161 A 1 HETATM 31 C CD MTX . . . B 2 -8.244 22.891 24.133 1 69.45 ? CD MTX 161 A 1 HETATM 32 O OE1 MTX . . . B 2 -8.242 21.724 24.644 1 68.9 ? OE1 MTX 161 A 1 HETATM 33 O OE2 MTX . . . B 2 -8.268 24.017 24.695 1 62.27 ? OE2 MTX 161 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #