data_1RGB # _model_server_result.job_id 0CfZKjRxAd2VbJxGIx3twA _model_server_result.datetime_utc '2024-10-19 16:46:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":134}' # _entry.id 1RGB # _exptl.entry_id 1RGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 281.477 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9E)-OCTADEC-9-ENAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RGB _cell.length_a 46.568 _cell.length_b 82.67 _cell.length_c 119.469 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 122 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 B SG CYS 26 B CYS 27 1_555 B SG CYS 115 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 B SG CYS 28 B CYS 29 1_555 B SG CYS 44 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 43 B CYS 44 1_555 B SG CYS 95 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 49 B CYS 50 1_555 B SG CYS 122 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 B SG CYS 50 B CYS 51 1_555 B SG CYS 88 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf13 B SG CYS 57 B CYS 61 1_555 B SG CYS 81 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 B SG CYS 75 B CYS 84 1_555 B SG CYS 86 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 C SG CYS 26 K CYS 27 1_555 C SG CYS 115 K CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf16 C SG CYS 28 K CYS 29 1_555 C SG CYS 44 K CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 C SG CYS 43 K CYS 44 1_555 C SG CYS 95 K CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf18 C SG CYS 49 K CYS 50 1_555 C SG CYS 122 K CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 C SG CYS 50 K CYS 51 1_555 C SG CYS 88 K CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf20 C SG CYS 57 K CYS 61 1_555 C SG CYS 81 K CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 C SG CYS 75 K CYS 84 1_555 C SG CYS 86 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf22 D SG CYS 26 L CYS 27 1_555 D SG CYS 115 L CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf23 D SG CYS 28 L CYS 29 1_555 D SG CYS 44 L CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf24 D SG CYS 43 L CYS 44 1_555 D SG CYS 95 L CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf25 D SG CYS 49 L CYS 50 1_555 D SG CYS 122 L CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf26 D SG CYS 50 L CYS 51 1_555 D SG CYS 88 L CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf27 D SG CYS 57 L CYS 61 1_555 D SG CYS 81 L CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf28 D SG CYS 75 L CYS 84 1_555 D SG CYS 86 L CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C18 H35 N O' _chem_comp.formula_weight 281.477 _chem_comp.id ELD _chem_comp.mon_nstd_flag . _chem_comp.name (9E)-OCTADEC-9-ENAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ELAIDOYLAMIDE # _atom_sites.entry_id 1RGB _atom_sites.fract_transf_matrix[1][1] 0.021474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ELD B 1 134 1 ELD ELD . F 2 ELD L 1 134 2 ELD ELD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ELD . . . E 2 2.034 65.986 24.868 1 18.64 ? C1 ELD 134 B 1 HETATM 2 N N1 ELD . . . E 2 1.617 66.547 26.012 1 18.64 ? N1 ELD 134 B 1 HETATM 3 O O2 ELD . . . E 2 1.694 64.808 24.524 1 18.64 ? O2 ELD 134 B 1 HETATM 4 C C2 ELD . . . E 2 3.561 66.065 24.553 1 18.64 ? C2 ELD 134 B 1 HETATM 5 C C3 ELD . . . E 2 3.849 65.382 23.189 1 18.64 ? C3 ELD 134 B 1 HETATM 6 C C4 ELD . . . E 2 5.258 64.889 23.436 1 18.64 ? C4 ELD 134 B 1 HETATM 7 C C5 ELD . . . E 2 5.603 63.552 22.78 1 18.64 ? C5 ELD 134 B 1 HETATM 8 C C6 ELD . . . E 2 6.433 64.002 21.559 1 18.64 ? C6 ELD 134 B 1 HETATM 9 C C7 ELD . . . E 2 7.885 63.507 21.62 1 18.64 ? C7 ELD 134 B 1 HETATM 10 C C8 ELD . . . E 2 8.772 64.304 22.604 1 18.64 ? C8 ELD 134 B 1 HETATM 11 C C9 ELD . . . E 2 9.445 63.479 23.685 1 18.64 ? C9 ELD 134 B 1 HETATM 12 C C10 ELD . . . E 2 10.501 62.741 23.363 1 18.64 ? C10 ELD 134 B 1 HETATM 13 C C11 ELD . . . E 2 11.861 63.357 23.369 1 18.64 ? C11 ELD 134 B 1 HETATM 14 C C12 ELD . . . E 2 12.992 62.443 22.961 1 18.64 ? C12 ELD 134 B 1 HETATM 15 C C13 ELD . . . E 2 14.045 62.328 24.024 1 18.64 ? C13 ELD 134 B 1 HETATM 16 C C14 ELD . . . E 2 14.843 61.043 23.867 1 18.64 ? C14 ELD 134 B 1 HETATM 17 C C15 ELD . . . E 2 15.928 60.938 24.951 1 18.64 ? C15 ELD 134 B 1 HETATM 18 C C16 ELD . . . E 2 17.109 61.905 24.706 1 18.64 ? C16 ELD 134 B 1 HETATM 19 C C17 ELD . . . E 2 18.348 61.244 24.078 1 18.64 ? C17 ELD 134 B 1 HETATM 20 C C18 ELD . . . E 2 19.667 61.284 24.885 1 18.64 ? C18 ELD 134 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #