data_1RGI # _model_server_result.job_id 5AurUmJelYg7OYkX4_bVCg _model_server_result.datetime_utc '2024-10-10 12:17:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":380}' # _entry.id 1RGI # _exptl.entry_id 1RGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RGI _cell.length_a 145.245 _cell.length_b 145.245 _cell.length_c 129.948 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 40 G GLY 65 1_555 C CA CA . G CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A OD2 ASP 41 G ASP 66 1_555 C CA CA . G CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 A OE1 GLU 72 G GLU 97 1_555 C CA CA . G CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 A OE2 GLU 72 G GLU 97 1_555 C CA CA . G CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc5 A OD2 ASP 84 G ASP 109 1_555 D CA CA . G CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc6 A O GLY 89 G GLY 114 1_555 D CA CA . G CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc7 A O ALA 91 G ALA 116 1_555 D CA CA . G CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc8 A O VAL 120 G VAL 145 1_555 C CA CA . G CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc9 A O GLU 277 G GLU 302 1_555 E CA CA . G CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc10 A OD1 ASP 278 G ASP 303 1_555 E CA CA . G CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc11 A OE2 GLU 302 G GLU 327 1_555 E CA CA . G CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc12 A OE1 GLU 302 G GLU 327 1_555 E CA CA . G CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc13 D CA CA . G CA 404 1_555 B OE1 GLU 169 A GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc14 D CA CA . G CA 404 1_555 I O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc15 G O3G ATP . A ATP 380 1_555 F CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc16 G O2B ATP . A ATP 380 1_555 F CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1RGI _atom_sites.fract_transf_matrix[1][1] 0.006885 _atom_sites.fract_transf_matrix[1][2] 0.003975 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA G 1 403 403 CA CA . D 3 CA G 1 404 404 CA CA . E 3 CA G 1 406 406 CA CA . F 3 CA A 1 401 401 CA CA . G 4 ATP A 1 380 380 ATP ATP . H 5 HOH G 1 407 6 HOH HOH . H 5 HOH G 2 408 22 HOH HOH . H 5 HOH G 3 409 23 HOH HOH . H 5 HOH G 4 410 24 HOH HOH . H 5 HOH G 5 411 25 HOH HOH . H 5 HOH G 6 412 26 HOH HOH . H 5 HOH G 7 413 27 HOH HOH . I 5 HOH A 1 402 1 HOH HOH . I 5 HOH A 2 403 2 HOH HOH . I 5 HOH A 3 404 3 HOH HOH . I 5 HOH A 4 405 4 HOH HOH . I 5 HOH A 5 406 5 HOH HOH . I 5 HOH A 6 407 7 HOH HOH . I 5 HOH A 7 408 8 HOH HOH . I 5 HOH A 8 409 9 HOH HOH . I 5 HOH A 9 410 10 HOH HOH . I 5 HOH A 10 411 11 HOH HOH . I 5 HOH A 11 412 12 HOH HOH . I 5 HOH A 12 413 14 HOH HOH . I 5 HOH A 13 414 15 HOH HOH . I 5 HOH A 14 415 16 HOH HOH . I 5 HOH A 15 416 17 HOH HOH . I 5 HOH A 16 417 18 HOH HOH . I 5 HOH A 17 418 19 HOH HOH . I 5 HOH A 18 419 20 HOH HOH . I 5 HOH A 19 420 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 4 50.786 17.124 9.964 1 26.16 ? PG ATP 380 A 1 HETATM 2 O O1G ATP . . . G 4 49.353 17.015 10.312 1 23.94 ? O1G ATP 380 A 1 HETATM 3 O O2G ATP . . . G 4 51.394 15.72 9.936 1 22.42 ? O2G ATP 380 A 1 HETATM 4 O O3G ATP . . . G 4 50.905 17.74 8.546 1 26.83 ? O3G ATP 380 A 1 HETATM 5 P PB ATP . . . G 4 52.016 19.61 10.63 1 19.89 ? PB ATP 380 A 1 HETATM 6 O O1B ATP . . . G 4 51.827 20.609 11.674 1 17.36 ? O1B ATP 380 A 1 HETATM 7 O O2B ATP . . . G 4 51.22 20.02 9.384 1 21.94 ? O2B ATP 380 A 1 HETATM 8 O O3B ATP . . . G 4 51.558 18.107 11.026 1 23.24 ? O3B ATP 380 A 1 HETATM 9 P PA ATP . . . G 4 54.424 20.549 9.401 1 21.95 ? PA ATP 380 A 1 HETATM 10 O O1A ATP . . . G 4 54.198 20.289 7.967 1 22.01 ? O1A ATP 380 A 1 HETATM 11 O O2A ATP . . . G 4 54.114 22.006 9.79 1 19.36 ? O2A ATP 380 A 1 HETATM 12 O O3A ATP . . . G 4 53.585 19.462 10.273 1 21.84 ? O3A ATP 380 A 1 HETATM 13 O O5' ATP . . . G 4 55.94 20.213 9.732 1 21.71 ? O5' ATP 380 A 1 HETATM 14 C C5' ATP . . . G 4 56.32 19.984 11.072 1 22.85 ? C5' ATP 380 A 1 HETATM 15 C C4' ATP . . . G 4 57.34 18.868 11.112 1 22.92 ? C4' ATP 380 A 1 HETATM 16 O O4' ATP . . . G 4 58.397 19.225 10.25 1 23.1 ? O4' ATP 380 A 1 HETATM 17 C C3' ATP . . . G 4 57.945 18.67 12.479 1 23.21 ? C3' ATP 380 A 1 HETATM 18 O O3' ATP . . . G 4 57.943 17.282 12.769 1 23.94 ? O3' ATP 380 A 1 HETATM 19 C C2' ATP . . . G 4 59.329 19.256 12.274 1 23.06 ? C2' ATP 380 A 1 HETATM 20 O O2' ATP . . . G 4 60.324 18.71 13.087 1 24.22 ? O2' ATP 380 A 1 HETATM 21 C C1' ATP . . . G 4 59.61 18.926 10.837 1 22.95 ? C1' ATP 380 A 1 HETATM 22 N N9 ATP . . . G 4 60.648 19.721 10.21 1 24.76 ? N9 ATP 380 A 1 HETATM 23 C C8 ATP . . . G 4 60.642 21.056 10.02 1 28.43 ? C8 ATP 380 A 1 HETATM 24 N N7 ATP . . . G 4 61.788 21.411 9.408 1 30.2 ? N7 ATP 380 A 1 HETATM 25 C C5 ATP . . . G 4 62.505 20.308 9.18 1 27.78 ? C5 ATP 380 A 1 HETATM 26 C C6 ATP . . . G 4 63.724 20.104 8.597 1 27.42 ? C6 ATP 380 A 1 HETATM 27 N N6 ATP . . . G 4 64.579 21.084 8.38 1 28.2 ? N6 ATP 380 A 1 HETATM 28 N N1 ATP . . . G 4 64.203 18.842 8.535 1 30.78 ? N1 ATP 380 A 1 HETATM 29 C C2 ATP . . . G 4 63.502 17.769 9.034 1 31.42 ? C2 ATP 380 A 1 HETATM 30 N N3 ATP . . . G 4 62.279 18.011 9.597 1 30.9 ? N3 ATP 380 A 1 HETATM 31 C C4 ATP . . . G 4 61.795 19.255 9.678 1 27.1 ? C4 ATP 380 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #