data_1RGI # _model_server_result.job_id 8DotowNXechNwFSF6hJdFg _model_server_result.datetime_utc '2024-10-10 12:19:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":406}' # _entry.id 1RGI # _exptl.entry_id 1RGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RGI _cell.length_a 145.245 _cell.length_b 145.245 _cell.length_c 129.948 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 40 G GLY 65 1_555 C CA CA . G CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A OD2 ASP 41 G ASP 66 1_555 C CA CA . G CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 A OE1 GLU 72 G GLU 97 1_555 C CA CA . G CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 A OE2 GLU 72 G GLU 97 1_555 C CA CA . G CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc5 A OD2 ASP 84 G ASP 109 1_555 D CA CA . G CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc6 A O GLY 89 G GLY 114 1_555 D CA CA . G CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc7 A O ALA 91 G ALA 116 1_555 D CA CA . G CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc8 A O VAL 120 G VAL 145 1_555 C CA CA . G CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc9 A O GLU 277 G GLU 302 1_555 E CA CA . G CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc10 A OD1 ASP 278 G ASP 303 1_555 E CA CA . G CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc11 A OE2 GLU 302 G GLU 327 1_555 E CA CA . G CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc12 A OE1 GLU 302 G GLU 327 1_555 E CA CA . G CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc13 D CA CA . G CA 404 1_555 B OE1 GLU 169 A GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc14 D CA CA . G CA 404 1_555 I O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc15 G O3G ATP . A ATP 380 1_555 F CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc16 G O2B ATP . A ATP 380 1_555 F CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RGI _atom_sites.fract_transf_matrix[1][1] 0.006885 _atom_sites.fract_transf_matrix[1][2] 0.003975 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA G 1 403 403 CA CA . D 3 CA G 1 404 404 CA CA . E 3 CA G 1 406 406 CA CA . F 3 CA A 1 401 401 CA CA . G 4 ATP A 1 380 380 ATP ATP . H 5 HOH G 1 407 6 HOH HOH . H 5 HOH G 2 408 22 HOH HOH . H 5 HOH G 3 409 23 HOH HOH . H 5 HOH G 4 410 24 HOH HOH . H 5 HOH G 5 411 25 HOH HOH . H 5 HOH G 6 412 26 HOH HOH . H 5 HOH G 7 413 27 HOH HOH . I 5 HOH A 1 402 1 HOH HOH . I 5 HOH A 2 403 2 HOH HOH . I 5 HOH A 3 404 3 HOH HOH . I 5 HOH A 4 405 4 HOH HOH . I 5 HOH A 5 406 5 HOH HOH . I 5 HOH A 6 407 7 HOH HOH . I 5 HOH A 7 408 8 HOH HOH . I 5 HOH A 8 409 9 HOH HOH . I 5 HOH A 9 410 10 HOH HOH . I 5 HOH A 10 411 11 HOH HOH . I 5 HOH A 11 412 12 HOH HOH . I 5 HOH A 12 413 14 HOH HOH . I 5 HOH A 13 414 15 HOH HOH . I 5 HOH A 14 415 16 HOH HOH . I 5 HOH A 15 416 17 HOH HOH . I 5 HOH A 16 417 18 HOH HOH . I 5 HOH A 17 418 19 HOH HOH . I 5 HOH A 18 419 20 HOH HOH . I 5 HOH A 19 420 21 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.765 _atom_site.Cartn_y 49.17 _atom_site.Cartn_z 19.5 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 406 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #