data_1RGK
#
_model_server_result.job_id            NkrwUh4XILh50FtNNcXqXA 
_model_server_result.datetime_utc      '2024-11-22 08:17:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rgk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":105}' 
#
_entry.id    1RGK 
#
_exptl.entry_id    1RGK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-2'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RGK 
_cell.length_a            49.1 
_cell.length_b            46.69 
_cell.length_c            41.11 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RGK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc1 A OD2 ASP 15 A ASP 15 1_555 B CA CA . A CA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc2 A OD1 ASP 15 A ASP 15 1_555 B CA CA . A CA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc3 B CA CA . A CA 106 1_555 D O HOH . A HOH 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc4 B CA CA . A CA 106 1_555 D O HOH . A HOH 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc5 B CA CA . A CA 106 1_555 D O HOH . A HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc6 B CA CA . A CA 106 1_555 D O HOH . A HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc7 B CA CA . A CA 106 1_555 D O HOH . A HOH 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc8 B CA CA . A CA 106 1_555 D O HOH . A HOH 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                2AM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-2'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 2AM doub 1 n n 
P O2P 2AM sing 2 n n 
P O3P 2AM sing 3 n n 
P O2' 2AM sing 4 n n 
O2P HOP2 2AM sing 5 n n 
O3P HOP3 2AM sing 6 n n 
C5' O5' 2AM sing 7 n n 
C5' C4' 2AM sing 8 n n 
C5' "H5'1" 2AM sing 9 n n 
C5' "H5'2" 2AM sing 10 n n 
O5' HO5' 2AM sing 11 n n 
C4' O4' 2AM sing 12 n n 
C4' C3' 2AM sing 13 n n 
C4' H4' 2AM sing 14 n n 
O4' C1' 2AM sing 15 n n 
C3' O3' 2AM sing 16 n n 
C3' C2' 2AM sing 17 n n 
C3' H3' 2AM sing 18 n n 
O3' HO3' 2AM sing 19 n n 
C2' O2' 2AM sing 20 n n 
C2' C1' 2AM sing 21 n n 
C2' H2' 2AM sing 22 n n 
C1' N9 2AM sing 23 n n 
C1' H1' 2AM sing 24 n n 
N9 C8 2AM sing 25 n y 
N9 C4 2AM sing 26 n y 
C8 N7 2AM doub 27 n y 
C8 H8 2AM sing 28 n n 
N7 C5 2AM sing 29 n y 
C5 C6 2AM sing 30 n y 
C5 C4 2AM doub 31 n y 
C6 N6 2AM sing 32 n n 
C6 N1 2AM doub 33 n y 
N6 HN61 2AM sing 34 n n 
N6 HN62 2AM sing 35 n n 
N1 C2 2AM sing 36 n y 
C2 N3 2AM doub 37 n y 
C2 H2 2AM sing 38 n n 
N3 C4 2AM sing 39 n y 
#
_atom_sites.entry_id                     1RGK 
_atom_sites.fract_transf_matrix[1][1]    0.020367 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021418 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024325 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 106 106 CA CA . 
C 3 2AM A 1 105 105 2AM 2AM . 
D 4 HOH A 1 107 107 HOH HOH . 
D 4 HOH A 2 108 108 HOH HOH . 
D 4 HOH A 3 109 109 HOH HOH . 
D 4 HOH A 4 110 110 HOH HOH . 
D 4 HOH A 5 111 111 HOH HOH . 
D 4 HOH A 6 112 112 HOH HOH . 
D 4 HOH A 7 113 113 HOH HOH . 
D 4 HOH A 8 114 114 HOH HOH . 
D 4 HOH A 9 115 115 HOH HOH . 
D 4 HOH A 10 116 116 HOH HOH . 
D 4 HOH A 11 117 117 HOH HOH . 
D 4 HOH A 12 118 118 HOH HOH . 
D 4 HOH A 13 119 119 HOH HOH . 
D 4 HOH A 14 120 120 HOH HOH . 
D 4 HOH A 15 121 121 HOH HOH . 
D 4 HOH A 16 122 122 HOH HOH . 
D 4 HOH A 17 123 123 HOH HOH . 
D 4 HOH A 18 124 124 HOH HOH . 
D 4 HOH A 19 125 125 HOH HOH . 
D 4 HOH A 20 126 126 HOH HOH . 
D 4 HOH A 21 127 127 HOH HOH . 
D 4 HOH A 22 128 128 HOH HOH . 
D 4 HOH A 23 129 129 HOH HOH . 
D 4 HOH A 24 130 130 HOH HOH . 
D 4 HOH A 25 131 131 HOH HOH . 
D 4 HOH A 26 132 132 HOH HOH . 
D 4 HOH A 27 133 133 HOH HOH . 
D 4 HOH A 28 134 134 HOH HOH . 
D 4 HOH A 29 135 135 HOH HOH . 
D 4 HOH A 30 136 136 HOH HOH . 
D 4 HOH A 31 137 137 HOH HOH . 
D 4 HOH A 32 138 138 HOH HOH . 
D 4 HOH A 33 139 139 HOH HOH . 
D 4 HOH A 34 140 140 HOH HOH . 
D 4 HOH A 35 141 141 HOH HOH . 
D 4 HOH A 36 142 142 HOH HOH . 
D 4 HOH A 37 143 143 HOH HOH . 
D 4 HOH A 38 144 144 HOH HOH . 
D 4 HOH A 39 145 145 HOH HOH . 
D 4 HOH A 40 146 146 HOH HOH . 
D 4 HOH A 41 147 147 HOH HOH . 
D 4 HOH A 42 148 148 HOH HOH . 
D 4 HOH A 43 149 149 HOH HOH . 
D 4 HOH A 44 150 150 HOH HOH . 
D 4 HOH A 45 151 151 HOH HOH . 
D 4 HOH A 46 152 152 HOH HOH . 
D 4 HOH A 47 153 153 HOH HOH . 
D 4 HOH A 48 154 154 HOH HOH . 
D 4 HOH A 49 155 155 HOH HOH . 
D 4 HOH A 50 156 156 HOH HOH . 
D 4 HOH A 51 157 157 HOH HOH . 
D 4 HOH A 52 158 158 HOH HOH . 
D 4 HOH A 53 159 159 HOH HOH . 
D 4 HOH A 54 160 160 HOH HOH . 
D 4 HOH A 55 161 161 HOH HOH . 
D 4 HOH A 56 162 162 HOH HOH . 
D 4 HOH A 57 163 163 HOH HOH . 
D 4 HOH A 58 164 164 HOH HOH . 
D 4 HOH A 59 165 165 HOH HOH . 
D 4 HOH A 60 166 166 HOH HOH . 
D 4 HOH A 61 167 167 HOH HOH . 
D 4 HOH A 62 168 168 HOH HOH . 
D 4 HOH A 63 169 169 HOH HOH . 
D 4 HOH A 64 170 170 HOH HOH . 
D 4 HOH A 65 171 171 HOH HOH . 
D 4 HOH A 66 172 172 HOH HOH . 
D 4 HOH A 67 173 173 HOH HOH . 
D 4 HOH A 68 174 174 HOH HOH . 
D 4 HOH A 69 175 175 HOH HOH . 
D 4 HOH A 70 176 176 HOH HOH . 
D 4 HOH A 71 177 177 HOH HOH . 
D 4 HOH A 72 178 178 HOH HOH . 
D 4 HOH A 73 179 179 HOH HOH . 
D 4 HOH A 74 180 180 HOH HOH . 
D 4 HOH A 75 181 181 HOH HOH . 
D 4 HOH A 76 182 182 HOH HOH . 
D 4 HOH A 77 183 183 HOH HOH . 
D 4 HOH A 78 184 184 HOH HOH . 
D 4 HOH A 79 185 185 HOH HOH . 
D 4 HOH A 80 186 186 HOH HOH . 
D 4 HOH A 81 187 187 HOH HOH . 
D 4 HOH A 82 188 188 HOH HOH . 
D 4 HOH A 83 189 189 HOH HOH . 
D 4 HOH A 84 190 190 HOH HOH . 
D 4 HOH A 85 191 191 HOH HOH . 
D 4 HOH A 86 192 192 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 2AM . . . C 3 19.792 13.752 1.225 1 15.7 ? P 2AM 105 A 1 
HETATM 2 O O1P 2AM . . . C 3 18.458 14.439 1.107 1 18.43 ? O1P 2AM 105 A 1 
HETATM 3 O O2P 2AM . . . C 3 20.827 14.594 1.896 1 17.89 ? O2P 2AM 105 A 1 
HETATM 4 O O3P 2AM . . . C 3 19.717 12.362 1.799 1 21.88 ? O3P 2AM 105 A 1 
HETATM 5 C C5' 2AM . . . C 3 24.522 14.245 -2.109 1 33.7 ? C5' 2AM 105 A 1 
HETATM 6 O O5' 2AM . . . C 3 24.97 13.485 -0.981 1 60 ? O5' 2AM 105 A 1 
HETATM 7 C C4' 2AM . . . C 3 23.127 13.808 -2.5 1 30.64 ? C4' 2AM 105 A 1 
HETATM 8 O O4' 2AM . . . C 3 22.976 12.373 -2.265 1 29.41 ? O4' 2AM 105 A 1 
HETATM 9 C C3' 2AM . . . C 3 22.003 14.466 -1.704 1 29.9 ? C3' 2AM 105 A 1 
HETATM 10 O O3' 2AM . . . C 3 20.933 14.736 -2.591 1 25.74 ? O3' 2AM 105 A 1 
HETATM 11 C C2' 2AM . . . C 3 21.599 13.369 -0.705 1 24.9 ? C2' 2AM 105 A 1 
HETATM 12 O O2' 2AM . . . C 3 20.257 13.551 -0.296 1 16.62 ? O2' 2AM 105 A 1 
HETATM 13 C C1' 2AM . . . C 3 21.74 12.156 -1.628 1 24.23 ? C1' 2AM 105 A 1 
HETATM 14 N N9 2AM . . . C 3 21.802 10.852 -0.978 1 25.01 ? N9 2AM 105 A 1 
HETATM 15 C C8 2AM . . . C 3 22.521 10.658 0.169 1 22.51 ? C8 2AM 105 A 1 
HETATM 16 N N7 2AM . . . C 3 22.493 9.404 0.608 1 20.14 ? N7 2AM 105 A 1 
HETATM 17 C C5 2AM . . . C 3 21.693 8.742 -0.322 1 20.23 ? C5 2AM 105 A 1 
HETATM 18 C C6 2AM . . . C 3 21.266 7.398 -0.412 1 26.08 ? C6 2AM 105 A 1 
HETATM 19 N N6 2AM . . . C 3 21.6 6.478 0.507 1 26.92 ? N6 2AM 105 A 1 
HETATM 20 N N1 2AM . . . C 3 20.486 7.054 -1.461 1 19.23 ? N1 2AM 105 A 1 
HETATM 21 C C2 2AM . . . C 3 20.147 7.999 -2.35 1 25.61 ? C2 2AM 105 A 1 
HETATM 22 N N3 2AM . . . C 3 20.479 9.298 -2.367 1 27.14 ? N3 2AM 105 A 1 
HETATM 23 C C4 2AM . . . C 3 21.269 9.609 -1.32 1 25.04 ? C4 2AM 105 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#