data_1RGL # _model_server_result.job_id rMBlnzHPcj9G1zJfFVfdHw _model_server_result.datetime_utc '2024-11-25 20:04:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":105}' # _entry.id 1RGL # _exptl.entry_id 1RGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-2'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RGL _cell.length_a 49.16 _cell.length_b 46.76 _cell.length_c 41.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc1 A OD2 ASP 15 A ASP 15 1_555 B CA CA . A CA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc2 A OD1 ASP 15 A ASP 15 1_555 B CA CA . A CA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc3 B CA CA . A CA 106 1_555 D O HOH . A HOH 107 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc4 B CA CA . A CA 106 1_555 D O HOH . A HOH 108 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc5 B CA CA . A CA 106 1_555 D O HOH . A HOH 110 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc6 B CA CA . A CA 106 1_555 D O HOH . A HOH 122 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc7 B CA CA . A CA 106 1_555 D O HOH . A HOH 143 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc8 B CA CA . A CA 106 1_555 D O HOH . A HOH 168 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 2GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-2'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 2GP doub 1 n n P O2P 2GP sing 2 n n P O3P 2GP sing 3 n n P O2' 2GP sing 4 n n O2P HOP2 2GP sing 5 n n O3P HOP3 2GP sing 6 n n O5' C5' 2GP sing 7 n n O5' HO5' 2GP sing 8 n n C5' C4' 2GP sing 9 n n C5' "H5'1" 2GP sing 10 n n C5' "H5'2" 2GP sing 11 n n C4' O4' 2GP sing 12 n n C4' C3' 2GP sing 13 n n C4' H4' 2GP sing 14 n n O4' C1' 2GP sing 15 n n C3' O3' 2GP sing 16 n n C3' C2' 2GP sing 17 n n C3' H3' 2GP sing 18 n n O3' HO3' 2GP sing 19 n n C2' O2' 2GP sing 20 n n C2' C1' 2GP sing 21 n n C2' H2' 2GP sing 22 n n C1' N9 2GP sing 23 n n C1' H1' 2GP sing 24 n n N9 C8 2GP sing 25 n y N9 C4 2GP sing 26 n y C8 N7 2GP doub 27 n y C8 H8 2GP sing 28 n n N7 C5 2GP sing 29 n y C5 C6 2GP sing 30 n n C5 C4 2GP doub 31 n y C6 O6 2GP doub 32 n n C6 N1 2GP sing 33 n n N1 C2 2GP sing 34 n n N1 HN1 2GP sing 35 n n C2 N2 2GP sing 36 n n C2 N3 2GP doub 37 n n N2 HN21 2GP sing 38 n n N2 HN22 2GP sing 39 n n N3 C4 2GP sing 40 n n # _atom_sites.entry_id 1RGL _atom_sites.fract_transf_matrix[1][1] 0.020342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 106 106 CA CA . C 3 2GP A 1 105 105 2GP 2GP . D 4 HOH A 1 107 107 HOH HOH . D 4 HOH A 2 108 108 HOH HOH . D 4 HOH A 3 109 109 HOH HOH . D 4 HOH A 4 110 110 HOH HOH . D 4 HOH A 5 111 111 HOH HOH . D 4 HOH A 6 112 112 HOH HOH . D 4 HOH A 7 113 113 HOH HOH . D 4 HOH A 8 114 114 HOH HOH . D 4 HOH A 9 115 115 HOH HOH . D 4 HOH A 10 116 116 HOH HOH . D 4 HOH A 11 117 117 HOH HOH . D 4 HOH A 12 118 118 HOH HOH . D 4 HOH A 13 119 119 HOH HOH . D 4 HOH A 14 120 120 HOH HOH . D 4 HOH A 15 121 121 HOH HOH . D 4 HOH A 16 122 122 HOH HOH . D 4 HOH A 17 123 123 HOH HOH . D 4 HOH A 18 124 124 HOH HOH . D 4 HOH A 19 125 125 HOH HOH . D 4 HOH A 20 126 126 HOH HOH . D 4 HOH A 21 127 127 HOH HOH . D 4 HOH A 22 128 128 HOH HOH . D 4 HOH A 23 129 129 HOH HOH . D 4 HOH A 24 130 130 HOH HOH . D 4 HOH A 25 131 131 HOH HOH . D 4 HOH A 26 132 132 HOH HOH . D 4 HOH A 27 133 133 HOH HOH . D 4 HOH A 28 134 134 HOH HOH . D 4 HOH A 29 135 135 HOH HOH . D 4 HOH A 30 136 136 HOH HOH . D 4 HOH A 31 137 137 HOH HOH . D 4 HOH A 32 138 138 HOH HOH . D 4 HOH A 33 139 139 HOH HOH . D 4 HOH A 34 140 140 HOH HOH . D 4 HOH A 35 141 141 HOH HOH . D 4 HOH A 36 142 142 HOH HOH . D 4 HOH A 37 143 143 HOH HOH . D 4 HOH A 38 144 144 HOH HOH . D 4 HOH A 39 145 145 HOH HOH . D 4 HOH A 40 146 146 HOH HOH . D 4 HOH A 41 148 148 HOH HOH . D 4 HOH A 42 149 149 HOH HOH . D 4 HOH A 43 150 150 HOH HOH . D 4 HOH A 44 151 151 HOH HOH . D 4 HOH A 45 152 152 HOH HOH . D 4 HOH A 46 153 153 HOH HOH . D 4 HOH A 47 154 154 HOH HOH . D 4 HOH A 48 155 155 HOH HOH . D 4 HOH A 49 156 156 HOH HOH . D 4 HOH A 50 157 157 HOH HOH . D 4 HOH A 51 158 158 HOH HOH . D 4 HOH A 52 159 159 HOH HOH . D 4 HOH A 53 160 160 HOH HOH . D 4 HOH A 54 161 161 HOH HOH . D 4 HOH A 55 162 162 HOH HOH . D 4 HOH A 56 163 163 HOH HOH . D 4 HOH A 57 164 164 HOH HOH . D 4 HOH A 58 165 165 HOH HOH . D 4 HOH A 59 166 166 HOH HOH . D 4 HOH A 60 167 167 HOH HOH . D 4 HOH A 61 168 168 HOH HOH . D 4 HOH A 62 169 169 HOH HOH . D 4 HOH A 63 170 170 HOH HOH . D 4 HOH A 64 171 171 HOH HOH . D 4 HOH A 65 172 172 HOH HOH . D 4 HOH A 66 173 173 HOH HOH . D 4 HOH A 67 174 174 HOH HOH . D 4 HOH A 68 175 175 HOH HOH . D 4 HOH A 69 176 176 HOH HOH . D 4 HOH A 70 177 177 HOH HOH . D 4 HOH A 71 178 178 HOH HOH . D 4 HOH A 72 179 179 HOH HOH . D 4 HOH A 73 180 180 HOH HOH . D 4 HOH A 74 181 181 HOH HOH . D 4 HOH A 75 182 182 HOH HOH . D 4 HOH A 76 183 183 HOH HOH . D 4 HOH A 77 184 184 HOH HOH . D 4 HOH A 78 185 185 HOH HOH . D 4 HOH A 79 186 186 HOH HOH . D 4 HOH A 80 187 187 HOH HOH . D 4 HOH A 81 188 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 2GP . . . C 3 19.973 13.723 1.221 1 22.7 ? P 2GP 105 A 1 HETATM 2 O O1P 2GP . . . C 3 21.039 14.419 2.032 1 23.16 ? O1P 2GP 105 A 1 HETATM 3 O O2P 2GP . . . C 3 19.739 12.315 1.669 1 28.9 ? O2P 2GP 105 A 1 HETATM 4 O O3P 2GP . . . C 3 18.711 14.516 1.068 1 23.39 ? O3P 2GP 105 A 1 HETATM 5 O O5' 2GP . . . C 3 25.981 11.831 -1.738 1 33.08 ? O5' 2GP 105 A 1 HETATM 6 C C5' 2GP . . . C 3 24.908 12.289 -0.855 1 60 ? C5' 2GP 105 A 1 HETATM 7 C C4' 2GP . . . C 3 23.859 13.147 -1.577 1 60 ? C4' 2GP 105 A 1 HETATM 8 O O4' 2GP . . . C 3 22.995 12.299 -2.379 1 47.31 ? O4' 2GP 105 A 1 HETATM 9 C C3' 2GP . . . C 3 22.906 13.917 -0.669 1 60 ? C3' 2GP 105 A 1 HETATM 10 O O3' 2GP . . . C 3 22.515 15.131 -1.326 1 52.71 ? O3' 2GP 105 A 1 HETATM 11 C C2' 2GP . . . C 3 21.751 12.917 -0.487 1 27.59 ? C2' 2GP 105 A 1 HETATM 12 O O2' 2GP . . . C 3 20.527 13.559 -0.244 1 22.98 ? O2' 2GP 105 A 1 HETATM 13 C C1' 2GP . . . C 3 21.675 12.328 -1.891 1 36.4 ? C1' 2GP 105 A 1 HETATM 14 N N9 2GP . . . C 3 21.166 10.969 -1.976 1 37.51 ? N9 2GP 105 A 1 HETATM 15 C C8 2GP . . . C 3 20.225 10.482 -2.869 1 24.79 ? C8 2GP 105 A 1 HETATM 16 N N7 2GP . . . C 3 20.005 9.196 -2.714 1 58.97 ? N7 2GP 105 A 1 HETATM 17 C C5 2GP . . . C 3 20.866 8.811 -1.667 1 60 ? C5 2GP 105 A 1 HETATM 18 C C6 2GP . . . C 3 21.077 7.54 -1.048 1 39.94 ? C6 2GP 105 A 1 HETATM 19 O O6 2GP . . . C 3 20.525 6.459 -1.298 1 56.29 ? O6 2GP 105 A 1 HETATM 20 N N1 2GP . . . C 3 22.042 7.597 -0.032 1 35.88 ? N1 2GP 105 A 1 HETATM 21 C C2 2GP . . . C 3 22.715 8.736 0.341 1 24.66 ? C2 2GP 105 A 1 HETATM 22 N N2 2GP . . . C 3 23.611 8.601 1.326 1 35.23 ? N2 2GP 105 A 1 HETATM 23 N N3 2GP . . . C 3 22.53 9.926 -0.218 1 45.64 ? N3 2GP 105 A 1 HETATM 24 C C4 2GP . . . C 3 21.589 9.894 -1.205 1 41.39 ? C4 2GP 105 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #