data_1RGN # _model_server_result.job_id c-BSChyFF2UqedtCr1Ff1w _model_server_result.datetime_utc '2024-11-13 05:48:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":902}' # _entry.id 1RGN # _exptl.entry_id 1RGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RGN _cell.length_a 139.817 _cell.length_b 139.817 _cell.length_c 184.047 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 E MG BCL . L BCL 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 D MG BCL . L BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc5 B NE2 HIS 182 M HIS 182 1_555 K MG BCL . M BCL 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 L MG BCL . M BCL 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc8 B OE1 GLU 234 M GLU 234 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc9 B OE2 GLU 234 M GLU 234 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 I FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 467 n n N1 CM1 LDA sing 468 n n N1 CM2 LDA sing 469 n n N1 C1 LDA sing 470 n n CM1 HM11 LDA sing 471 n n CM1 HM12 LDA sing 472 n n CM1 HM13 LDA sing 473 n n CM2 HM21 LDA sing 474 n n CM2 HM22 LDA sing 475 n n CM2 HM23 LDA sing 476 n n C1 C2 LDA sing 477 n n C1 H11 LDA sing 478 n n C1 H12 LDA sing 479 n n C2 C3 LDA sing 480 n n C2 H21 LDA sing 481 n n C2 H22 LDA sing 482 n n C3 C4 LDA sing 483 n n C3 H31 LDA sing 484 n n C3 H32 LDA sing 485 n n C4 C5 LDA sing 486 n n C4 H41 LDA sing 487 n n C4 H42 LDA sing 488 n n C5 C6 LDA sing 489 n n C5 H51 LDA sing 490 n n C5 H52 LDA sing 491 n n C6 C7 LDA sing 492 n n C6 H61 LDA sing 493 n n C6 H62 LDA sing 494 n n C7 C8 LDA sing 495 n n C7 H71 LDA sing 496 n n C7 H72 LDA sing 497 n n C8 C9 LDA sing 498 n n C8 H81 LDA sing 499 n n C8 H82 LDA sing 500 n n C9 C10 LDA sing 501 n n C9 H91 LDA sing 502 n n C9 H92 LDA sing 503 n n C10 C11 LDA sing 504 n n C10 H101 LDA sing 505 n n C10 H102 LDA sing 506 n n C11 C12 LDA sing 507 n n C11 H111 LDA sing 508 n n C11 H112 LDA sing 509 n n C12 H121 LDA sing 510 n n C12 H122 LDA sing 511 n n C12 H123 LDA sing 512 n n # _atom_sites.entry_id 1RGN _atom_sites.fract_transf_matrix[1][1] 0.007152 _atom_sites.fract_transf_matrix[1][2] 0.004129 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 302 302 BCL BCL . E 4 BCL L 1 304 304 BCL BCL . F 5 BPH L 1 402 402 BPH BPH . G 6 U10 L 1 502 502 U10 U10 . H 7 LDA L 1 904 904 LDA LDA . I 8 FE M 1 500 500 FE FE . J 9 PO4 M 1 907 907 PO4 PO4 . K 4 BCL M 1 908 301 BCL BCL . L 4 BCL M 1 909 303 BCL BCL . M 5 BPH M 1 401 401 BPH BPH . N 6 U10 M 1 501 501 U10 U10 . O 10 SPO M 1 600 600 SPO SP1 . P 7 LDA M 1 902 902 LDA LDA . Q 7 LDA M 1 903 903 LDA LDA . R 7 LDA M 1 905 905 LDA LDA . S 7 LDA M 1 906 906 LDA LDA . T 7 LDA H 1 901 901 LDA LDA . U 11 HOH L 1 905 1 HOH HOH . U 11 HOH L 2 906 2 HOH HOH . U 11 HOH L 3 907 14 HOH HOH . U 11 HOH L 4 908 15 HOH HOH . U 11 HOH L 5 909 19 HOH HOH . U 11 HOH L 6 910 22 HOH HOH . U 11 HOH L 7 911 28 HOH HOH . U 11 HOH L 8 912 29 HOH HOH . U 11 HOH L 9 913 37 HOH HOH . U 11 HOH L 10 914 40 HOH HOH . U 11 HOH L 11 915 41 HOH HOH . U 11 HOH L 12 916 48 HOH HOH . U 11 HOH L 13 917 49 HOH HOH . U 11 HOH L 14 918 50 HOH HOH . U 11 HOH L 15 919 55 HOH HOH . U 11 HOH L 16 920 57 HOH HOH . U 11 HOH L 17 921 66 HOH HOH . U 11 HOH L 18 922 69 HOH HOH . U 11 HOH L 19 923 80 HOH HOH . U 11 HOH L 20 924 83 HOH HOH . U 11 HOH L 21 925 86 HOH HOH . U 11 HOH L 22 926 89 HOH HOH . U 11 HOH L 23 927 92 HOH HOH . U 11 HOH L 24 928 93 HOH HOH . U 11 HOH L 25 929 94 HOH HOH . U 11 HOH L 26 930 104 HOH HOH . U 11 HOH L 27 931 108 HOH HOH . U 11 HOH L 28 932 115 HOH HOH . U 11 HOH L 29 933 117 HOH HOH . U 11 HOH L 30 934 121 HOH HOH . U 11 HOH L 31 935 125 HOH HOH . U 11 HOH L 32 936 127 HOH HOH . U 11 HOH L 33 937 139 HOH HOH . U 11 HOH L 34 938 140 HOH HOH . U 11 HOH L 35 939 142 HOH HOH . U 11 HOH L 36 940 146 HOH HOH . U 11 HOH L 37 941 158 HOH HOH . U 11 HOH L 38 942 159 HOH HOH . U 11 HOH L 39 943 162 HOH HOH . U 11 HOH L 40 944 165 HOH HOH . U 11 HOH L 41 945 171 HOH HOH . V 11 HOH M 1 910 3 HOH HOH . V 11 HOH M 2 911 4 HOH HOH . V 11 HOH M 3 912 5 HOH HOH . V 11 HOH M 4 913 6 HOH HOH . V 11 HOH M 5 914 10 HOH HOH . V 11 HOH M 6 915 12 HOH HOH . V 11 HOH M 7 916 23 HOH HOH . V 11 HOH M 8 917 24 HOH HOH . V 11 HOH M 9 918 27 HOH HOH . V 11 HOH M 10 919 32 HOH HOH . V 11 HOH M 11 920 36 HOH HOH . V 11 HOH M 12 921 39 HOH HOH . V 11 HOH M 13 922 47 HOH HOH . V 11 HOH M 14 923 52 HOH HOH . V 11 HOH M 15 924 53 HOH HOH . V 11 HOH M 16 925 59 HOH HOH . V 11 HOH M 17 926 60 HOH HOH . V 11 HOH M 18 927 63 HOH HOH . V 11 HOH M 19 928 64 HOH HOH . V 11 HOH M 20 929 68 HOH HOH . V 11 HOH M 21 930 70 HOH HOH . V 11 HOH M 22 931 71 HOH HOH . V 11 HOH M 23 932 72 HOH HOH . V 11 HOH M 24 933 73 HOH HOH . V 11 HOH M 25 934 75 HOH HOH . V 11 HOH M 26 935 77 HOH HOH . V 11 HOH M 27 936 78 HOH HOH . V 11 HOH M 28 937 85 HOH HOH . V 11 HOH M 29 938 88 HOH HOH . V 11 HOH M 30 939 90 HOH HOH . V 11 HOH M 31 940 95 HOH HOH . V 11 HOH M 32 941 98 HOH HOH . V 11 HOH M 33 942 99 HOH HOH . V 11 HOH M 34 943 103 HOH HOH . V 11 HOH M 35 944 105 HOH HOH . V 11 HOH M 36 945 107 HOH HOH . V 11 HOH M 37 946 109 HOH HOH . V 11 HOH M 38 947 111 HOH HOH . V 11 HOH M 39 948 113 HOH HOH . V 11 HOH M 40 949 114 HOH HOH . V 11 HOH M 41 950 122 HOH HOH . V 11 HOH M 42 951 134 HOH HOH . V 11 HOH M 43 952 135 HOH HOH . V 11 HOH M 44 953 136 HOH HOH . V 11 HOH M 45 954 147 HOH HOH . V 11 HOH M 46 955 154 HOH HOH . V 11 HOH M 47 956 155 HOH HOH . V 11 HOH M 48 957 156 HOH HOH . V 11 HOH M 49 958 169 HOH HOH . V 11 HOH M 50 959 170 HOH HOH . V 11 HOH M 51 960 172 HOH HOH . V 11 HOH M 52 961 173 HOH HOH . W 11 HOH H 1 902 7 HOH HOH . W 11 HOH H 2 903 8 HOH HOH . W 11 HOH H 3 904 9 HOH HOH . W 11 HOH H 4 905 11 HOH HOH . W 11 HOH H 5 906 13 HOH HOH . W 11 HOH H 6 907 16 HOH HOH . W 11 HOH H 7 908 17 HOH HOH . W 11 HOH H 8 909 18 HOH HOH . W 11 HOH H 9 910 20 HOH HOH . W 11 HOH H 10 911 21 HOH HOH . W 11 HOH H 11 912 25 HOH HOH . W 11 HOH H 12 913 26 HOH HOH . W 11 HOH H 13 914 30 HOH HOH . W 11 HOH H 14 915 31 HOH HOH . W 11 HOH H 15 916 33 HOH HOH . W 11 HOH H 16 917 34 HOH HOH . W 11 HOH H 17 918 35 HOH HOH . W 11 HOH H 18 919 38 HOH HOH . W 11 HOH H 19 920 42 HOH HOH . W 11 HOH H 20 921 43 HOH HOH . W 11 HOH H 21 922 44 HOH HOH . W 11 HOH H 22 923 45 HOH HOH . W 11 HOH H 23 924 46 HOH HOH . W 11 HOH H 24 925 51 HOH HOH . W 11 HOH H 25 926 54 HOH HOH . W 11 HOH H 26 927 56 HOH HOH . W 11 HOH H 27 928 58 HOH HOH . W 11 HOH H 28 929 61 HOH HOH . W 11 HOH H 29 930 62 HOH HOH . W 11 HOH H 30 931 65 HOH HOH . W 11 HOH H 31 932 67 HOH HOH . W 11 HOH H 32 933 74 HOH HOH . W 11 HOH H 33 934 76 HOH HOH . W 11 HOH H 34 935 79 HOH HOH . W 11 HOH H 35 936 81 HOH HOH . W 11 HOH H 36 937 82 HOH HOH . W 11 HOH H 37 938 84 HOH HOH . W 11 HOH H 38 939 87 HOH HOH . W 11 HOH H 39 940 91 HOH HOH . W 11 HOH H 40 941 96 HOH HOH . W 11 HOH H 41 942 97 HOH HOH . W 11 HOH H 42 943 100 HOH HOH . W 11 HOH H 43 944 101 HOH HOH . W 11 HOH H 44 945 102 HOH HOH . W 11 HOH H 45 946 106 HOH HOH . W 11 HOH H 46 947 110 HOH HOH . W 11 HOH H 47 948 112 HOH HOH . W 11 HOH H 48 949 116 HOH HOH . W 11 HOH H 49 950 118 HOH HOH . W 11 HOH H 50 951 119 HOH HOH . W 11 HOH H 51 952 120 HOH HOH . W 11 HOH H 52 953 123 HOH HOH . W 11 HOH H 53 954 124 HOH HOH . W 11 HOH H 54 955 126 HOH HOH . W 11 HOH H 55 956 128 HOH HOH . W 11 HOH H 56 957 129 HOH HOH . W 11 HOH H 57 958 130 HOH HOH . W 11 HOH H 58 959 131 HOH HOH . W 11 HOH H 59 960 132 HOH HOH . W 11 HOH H 60 961 133 HOH HOH . W 11 HOH H 61 962 137 HOH HOH . W 11 HOH H 62 963 138 HOH HOH . W 11 HOH H 63 964 141 HOH HOH . W 11 HOH H 64 965 143 HOH HOH . W 11 HOH H 65 966 144 HOH HOH . W 11 HOH H 66 967 145 HOH HOH . W 11 HOH H 67 968 148 HOH HOH . W 11 HOH H 68 969 149 HOH HOH . W 11 HOH H 69 970 150 HOH HOH . W 11 HOH H 70 971 151 HOH HOH . W 11 HOH H 71 972 152 HOH HOH . W 11 HOH H 72 973 153 HOH HOH . W 11 HOH H 73 974 157 HOH HOH . W 11 HOH H 74 975 160 HOH HOH . W 11 HOH H 75 976 161 HOH HOH . W 11 HOH H 76 977 163 HOH HOH . W 11 HOH H 77 978 164 HOH HOH . W 11 HOH H 78 979 166 HOH HOH . W 11 HOH H 79 980 167 HOH HOH . W 11 HOH H 80 981 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . P 7 26.585 87.523 37.227 1 100.51 ? N1 LDA 902 M 1 HETATM 2 O O1 LDA . . . P 7 26.518 86.441 37.874 1 101.44 ? O1 LDA 902 M 1 HETATM 3 C CM1 LDA . . . P 7 27.904 88.118 37.565 1 100.09 ? CM1 LDA 902 M 1 HETATM 4 C CM2 LDA . . . P 7 26.593 87.161 35.789 1 100.6 ? CM2 LDA 902 M 1 HETATM 5 C C1 LDA . . . P 7 25.501 88.507 37.527 1 98.63 ? C1 LDA 902 M 1 HETATM 6 C C2 LDA . . . P 7 24.096 87.92 37.791 1 97.03 ? C2 LDA 902 M 1 HETATM 7 C C3 LDA . . . P 7 23.019 89.007 37.939 1 96.39 ? C3 LDA 902 M 1 HETATM 8 C C4 LDA . . . P 7 22.36 89.079 39.323 1 96.89 ? C4 LDA 902 M 1 HETATM 9 C C5 LDA . . . P 7 21.1 89.984 39.39 1 98.23 ? C5 LDA 902 M 1 HETATM 10 C C6 LDA . . . P 7 20.933 90.881 40.65 1 97.84 ? C6 LDA 902 M 1 HETATM 11 C C7 LDA . . . P 7 19.919 92.049 40.481 1 98.1 ? C7 LDA 902 M 1 HETATM 12 C C8 LDA . . . P 7 20.197 93.314 41.339 1 98.68 ? C8 LDA 902 M 1 HETATM 13 C C9 LDA . . . P 7 18.977 94.246 41.656 1 99.03 ? C9 LDA 902 M 1 HETATM 14 C C10 LDA . . . P 7 19.269 95.45 42.626 1 98.41 ? C10 LDA 902 M 1 HETATM 15 C C11 LDA . . . P 7 18.727 96.828 42.151 1 98.1 ? C11 LDA 902 M 1 HETATM 16 C C12 LDA . . . P 7 19.215 98.131 42.844 1 96.65 ? C12 LDA 902 M 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #