data_1RGQ # _model_server_result.job_id S256eD8PL0jzoq8LsjaI8g _model_server_result.datetime_utc '2024-11-22 09:44:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":194}' # _entry.id 1RGQ # _exptl.entry_id 1RGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 889.928 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(PYRAZIN-2-YLCARBONYL)LEUCYLISOLEUCYL-N~1~-{1-[2-({1-CARBOXY-2-[4-(PHOSPHONOOXY)PHENYL]ETHYL}AMINO)-1,1-DIHYDROXY-2-OXOETHYL]BUT-3-ENYL}-3-CYCLOHEXYLALANINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RGQ _cell.length_a 226.385 _cell.length_b 226.385 _cell.length_c 76.864 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CB SER 150 B SER 142 1_555 G O15 AKP . B AKP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? metalc ? metalc1 A SG CYS 108 A CYS 100 1_555 E ZN ZN . A ZN 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc2 A SG CYS 110 A CYS 102 1_555 E ZN ZN . A ZN 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc3 A SG CYS 156 A CYS 148 1_555 E ZN ZN . A ZN 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 B SG CYS 108 B CYS 100 1_555 F ZN ZN . B ZN 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc5 B SG CYS 110 B CYS 102 1_555 F ZN ZN . B ZN 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc6 B SG CYS 156 B CYS 148 1_555 F ZN ZN . B ZN 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? # _chem_comp.formula 'C41 H60 N7 O13 P' _chem_comp.formula_weight 889.928 _chem_comp.id AKP _chem_comp.mon_nstd_flag . _chem_comp.name N-(PYRAZIN-2-YLCARBONYL)LEUCYLISOLEUCYL-N~1~-{1-[2-({1-CARBOXY-2-[4-(PHOSPHONOOXY)PHENYL]ETHYL}AMINO)-1,1-DIHYDROXY-2-OXOETHYL]BUT-3-ENYL}-3-CYCLOHEXYLALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AKP sing 1 n n C1 C3 AKP sing 2 n n C1 N7 AKP sing 3 n n C1 H1 AKP sing 4 n n C2 O1 AKP sing 5 n n C2 C11 AKP sing 6 n n C2 O15 AKP sing 7 n n O1 HO1 AKP sing 8 n n C3 C4 AKP sing 9 n n C3 H31A AKP sing 10 n n C3 H32 AKP sing 11 n n C4 C5 AKP doub 12 n n C4 H4 AKP sing 13 n n C5 H51 AKP sing 14 n n C5 H52 AKP sing 15 n n N1 C6 AKP sing 16 n n N1 C11 AKP sing 17 n n N1 HN1 AKP sing 18 n n C6 C7 AKP sing 19 n n C6 C8 AKP sing 20 n n C6 H6 AKP sing 21 n n C7 O2 AKP doub 22 n n C7 O3 AKP sing 23 n n C8 C9 AKP sing 24 n n C8 H81 AKP sing 25 n n C8 H82 AKP sing 26 n n C9 C10 AKP doub 27 n y C9 C39 AKP sing 28 n y O3 HO3 AKP sing 29 n n C10 C38 AKP sing 30 n y C10 H10 AKP sing 31 n n C11 O5 AKP doub 32 n n C12 N3 AKP sing 33 n y C12 C37 AKP doub 34 n y C12 H12 AKP sing 35 n n N3 C13 AKP doub 36 n y C13 C14 AKP sing 37 n y C13 H13 AKP sing 38 n n C14 C15 AKP sing 39 n n C14 N2 AKP doub 40 n y C15 O9 AKP doub 41 n n C15 N4 AKP sing 42 n n N4 C16 AKP sing 43 n n N4 HN4 AKP sing 44 n n C16 C17 AKP sing 45 n n C16 C18 AKP sing 46 n n C16 H16 AKP sing 47 n n C17 O12 AKP doub 48 n n C17 N5 AKP sing 49 n n C18 C19 AKP sing 50 n n C18 H181 AKP sing 51 n n C18 H182 AKP sing 52 n n C19 C28 AKP sing 53 n n C19 C29 AKP sing 54 n n C19 H19 AKP sing 55 n n N5 C20 AKP sing 56 n n N5 HN5 AKP sing 57 n n C20 C21 AKP sing 58 n n C20 C22 AKP sing 59 n n C20 H20 AKP sing 60 n n C21 O13 AKP doub 61 n n C21 N6 AKP sing 62 n n C22 C23 AKP sing 63 n n C22 C24 AKP sing 64 n n C22 H22 AKP sing 65 n n C23 H231 AKP sing 66 n n C23 H232 AKP sing 67 n n C23 H233 AKP sing 68 n n C24 C30 AKP sing 69 n n C24 H241 AKP sing 70 n n C24 H242 AKP sing 71 n n N6 C25 AKP sing 72 n n N6 HN6 AKP sing 73 n n C25 C26 AKP sing 74 n n C25 C27 AKP sing 75 n n C25 H25 AKP sing 76 n n C26 O14 AKP doub 77 n n C26 N7 AKP sing 78 n n C27 C31 AKP sing 79 n n C27 H271 AKP sing 80 n n C27 H272 AKP sing 81 n n N7 HN7 AKP sing 82 n n C28 H281 AKP sing 83 n n C28 H282 AKP sing 84 n n C28 H283 AKP sing 85 n n C29 H291 AKP sing 86 n n C29 H292 AKP sing 87 n n C29 H293 AKP sing 88 n n C30 H301 AKP sing 89 n n C30 H302 AKP sing 90 n n C30 H303 AKP sing 91 n n C31 C32 AKP sing 92 n n C31 C33 AKP sing 93 n n C31 H31 AKP sing 94 n n C32 C34 AKP sing 95 n n C32 H321 AKP sing 96 n n C32 H322 AKP sing 97 n n C33 C35 AKP sing 98 n n C33 H331 AKP sing 99 n n C33 H332 AKP sing 100 n n C34 C36 AKP sing 101 n n C34 H341 AKP sing 102 n n C34 H342 AKP sing 103 n n C35 C36 AKP sing 104 n n C35 H351 AKP sing 105 n n C35 H352 AKP sing 106 n n C36 H361 AKP sing 107 n n C36 H362 AKP sing 108 n n C37 N2 AKP sing 109 n y C37 H37 AKP sing 110 n n C39 C41 AKP doub 111 n y C39 H39 AKP sing 112 n n C38 C40 AKP doub 113 n y C38 H38 AKP sing 114 n n C40 C41 AKP sing 115 n y C40 O6 AKP sing 116 n n C41 H41 AKP sing 117 n n O6 P1 AKP sing 118 n n P1 O8 AKP doub 119 n n P1 O10 AKP sing 120 n n P1 O7 AKP sing 121 n n O10 H2 AKP sing 122 n n O7 HO7 AKP sing 123 n n O15 H15 AKP sing 124 n n # _atom_sites.entry_id 1RGQ _atom_sites.fract_transf_matrix[1][1] 0.004417 _atom_sites.fract_transf_matrix[1][2] 0.00255 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 193 185 ZN ZN . F 3 ZN B 1 193 186 ZN ZN . G 4 AKP B 1 194 142 AKP INH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKP . . . G 4 17.509 20.841 -13.654 1 37.15 ? C1 AKP 194 B 1 HETATM 2 C C2 AKP . . . G 4 16.668 20.488 -14.917 1 37.15 ? C2 AKP 194 B 1 HETATM 3 O O1 AKP . . . G 4 17.419 19.729 -15.844 1 37.15 ? O1 AKP 194 B 1 HETATM 4 C C3 AKP . . . G 4 17.669 22.329 -13.235 1 37.15 ? C3 AKP 194 B 1 HETATM 5 C C4 AKP . . . G 4 18.114 22.541 -11.797 1 37.15 ? C4 AKP 194 B 1 HETATM 6 C C5 AKP . . . G 4 17.291 22.552 -10.731 1 37.15 ? C5 AKP 194 B 1 HETATM 7 N N1 AKP . . . G 4 15.415 18.482 -14.465 1 37.15 ? N1 AKP 194 B 1 HETATM 8 C C6 AKP . . . G 4 14.368 17.628 -13.857 1 37.15 ? C6 AKP 194 B 1 HETATM 9 C C7 AKP . . . G 4 14.547 17.641 -12.296 1 37.15 ? C7 AKP 194 B 1 HETATM 10 O O2 AKP . . . G 4 13.71 17.091 -11.591 1 37.15 ? O2 AKP 194 B 1 HETATM 11 C C8 AKP . . . G 4 14.471 16.186 -14.452 1 37.15 ? C8 AKP 194 B 1 HETATM 12 C C9 AKP . . . G 4 15.885 15.651 -14.387 1 37.15 ? C9 AKP 194 B 1 HETATM 13 O O3 AKP . . . G 4 15.533 18.175 -11.806 1 37.15 ? O3 AKP 194 B 1 HETATM 14 C C10 AKP . . . G 4 16.405 15.139 -13.164 1 37.15 ? C10 AKP 194 B 1 HETATM 15 C C11 AKP . . . G 4 15.372 19.824 -14.407 1 37.15 ? C11 AKP 194 B 1 HETATM 16 O O5 AKP . . . G 4 14.47 20.51 -13.997 1 37.15 ? O5 AKP 194 B 1 HETATM 17 C C12 AKP . . . G 4 30.239 23.703 -6.144 1 37.15 ? C12 AKP 194 B 1 HETATM 18 N N3 AKP . . . G 4 29.096 24.285 -5.658 1 37.15 ? N3 AKP 194 B 1 HETATM 19 C C13 AKP . . . G 4 27.999 24.341 -6.477 1 37.15 ? C13 AKP 194 B 1 HETATM 20 C C14 AKP . . . G 4 28.027 23.809 -7.806 1 37.15 ? C14 AKP 194 B 1 HETATM 21 C C15 AKP . . . G 4 26.805 23.899 -8.635 1 37.15 ? C15 AKP 194 B 1 HETATM 22 O O9 AKP . . . G 4 25.758 24.426 -8.213 1 37.15 ? O9 AKP 194 B 1 HETATM 23 N N4 AKP . . . G 4 26.894 23.356 -9.897 1 37.15 ? N4 AKP 194 B 1 HETATM 24 C C16 AKP . . . G 4 25.722 23.37 -10.814 1 37.15 ? C16 AKP 194 B 1 HETATM 25 C C17 AKP . . . G 4 25.007 22.019 -10.706 1 37.15 ? C17 AKP 194 B 1 HETATM 26 O O12 AKP . . . G 4 25.434 21.035 -11.308 1 37.15 ? O12 AKP 194 B 1 HETATM 27 C C18 AKP . . . G 4 26.101 23.565 -12.302 1 37.15 ? C18 AKP 194 B 1 HETATM 28 C C19 AKP . . . G 4 26.824 24.849 -12.725 1 37.15 ? C19 AKP 194 B 1 HETATM 29 N N5 AKP . . . G 4 23.93 22.029 -9.9 1 37.15 ? N5 AKP 194 B 1 HETATM 30 C C20 AKP . . . G 4 22.814 21.068 -10.107 1 37.15 ? C20 AKP 194 B 1 HETATM 31 C C21 AKP . . . G 4 22.168 21.252 -11.532 1 37.15 ? C21 AKP 194 B 1 HETATM 32 O O13 AKP . . . G 4 22.123 22.346 -12.073 1 37.15 ? O13 AKP 194 B 1 HETATM 33 C C22 AKP . . . G 4 21.75 21.273 -8.991 1 37.15 ? C22 AKP 194 B 1 HETATM 34 C C23 AKP . . . G 4 20.547 20.298 -9.15 1 37.15 ? C23 AKP 194 B 1 HETATM 35 C C24 AKP . . . G 4 22.416 21.102 -7.579 1 37.15 ? C24 AKP 194 B 1 HETATM 36 N N6 AKP . . . G 4 21.682 20.107 -12.029 1 37.15 ? N6 AKP 194 B 1 HETATM 37 C C25 AKP . . . G 4 21.049 20.024 -13.334 1 37.15 ? C25 AKP 194 B 1 HETATM 38 C C26 AKP . . . G 4 19.573 19.683 -13.093 1 37.15 ? C26 AKP 194 B 1 HETATM 39 O O14 AKP . . . G 4 19.209 18.951 -12.183 1 37.15 ? O14 AKP 194 B 1 HETATM 40 C C27 AKP . . . G 4 21.76 18.906 -14.105 1 37.15 ? C27 AKP 194 B 1 HETATM 41 N N7 AKP . . . G 4 18.783 20.268 -13.971 1 37.15 ? N7 AKP 194 B 1 HETATM 42 C C28 AKP . . . G 4 25.917 26.084 -12.607 1 37.15 ? C28 AKP 194 B 1 HETATM 43 C C29 AKP . . . G 4 27.297 24.733 -14.182 1 37.15 ? C29 AKP 194 B 1 HETATM 44 C C30 AKP . . . G 4 23.007 19.706 -7.256 1 37.15 ? C30 AKP 194 B 1 HETATM 45 C C31 AKP . . . G 4 22.658 19.377 -15.253 1 37.15 ? C31 AKP 194 B 1 HETATM 46 C C32 AKP . . . G 4 23.36 18.157 -15.92 1 37.15 ? C32 AKP 194 B 1 HETATM 47 C C33 AKP . . . G 4 23.728 20.406 -14.791 1 37.15 ? C33 AKP 194 B 1 HETATM 48 C C34 AKP . . . G 4 24.29 18.579 -17.083 1 37.15 ? C34 AKP 194 B 1 HETATM 49 C C35 AKP . . . G 4 24.613 20.856 -15.973 1 37.15 ? C35 AKP 194 B 1 HETATM 50 C C36 AKP . . . G 4 25.313 19.649 -16.64 1 37.15 ? C36 AKP 194 B 1 HETATM 51 C C37 AKP . . . G 4 30.28 23.171 -7.465 1 37.15 ? C37 AKP 194 B 1 HETATM 52 N N2 AKP . . . G 4 29.175 23.22 -8.302 1 37.15 ? N2 AKP 194 B 1 HETATM 53 C C39 AKP . . . G 4 16.716 15.667 -15.54 1 37.15 ? C39 AKP 194 B 1 HETATM 54 C C38 AKP . . . G 4 17.715 14.666 -13.082 1 37.15 ? C38 AKP 194 B 1 HETATM 55 C C40 AKP . . . G 4 18.531 14.694 -14.233 1 37.15 ? C40 AKP 194 B 1 HETATM 56 C C41 AKP . . . G 4 18.042 15.189 -15.469 1 37.15 ? C41 AKP 194 B 1 HETATM 57 O O6 AKP . . . G 4 19.866 14.237 -14.167 1 37.15 ? O6 AKP 194 B 1 HETATM 58 P P1 AKP . . . G 4 20.372 13.032 -13.284 1 37.15 ? P1 AKP 194 B 1 HETATM 59 O O8 AKP . . . G 4 19.886 13.196 -11.812 1 37.15 ? O8 AKP 194 B 1 HETATM 60 O O10 AKP . . . G 4 21.931 13.118 -13.355 1 37.15 ? O10 AKP 194 B 1 HETATM 61 O O7 AKP . . . G 4 19.806 11.729 -13.927 1 37.15 ? O7 AKP 194 B 1 HETATM 62 O O15 AKP . . . G 4 16.405 21.697 -15.621 1 37.15 ? O15 AKP 194 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 62 #