data_1RGS # _model_server_result.job_id MxOdUdWPA0i32h1sTAq_2A _model_server_result.datetime_utc '2024-11-22 10:54:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 1RGS # _exptl.entry_id 1RGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RGS _cell.length_a 88.9 _cell.length_b 88.9 _cell.length_c 179.9 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 1RGS _atom_sites.fract_transf_matrix[1][1] 0.011249 _atom_sites.fract_transf_matrix[1][2] 0.006494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 401 401 CMP CMP . C 2 CMP A 1 601 601 CMP CMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . B 2 39.389 48.319 84.602 1 8.44 ? P CMP 401 A 1 HETATM 2 O O1P CMP . . . B 2 39.115 49.513 83.777 1 7.81 ? O1P CMP 401 A 1 HETATM 3 O O2P CMP . . . B 2 39.117 46.987 84.009 1 7.21 ? O2P CMP 401 A 1 HETATM 4 O O5' CMP . . . B 2 38.738 48.391 86.031 1 3.69 ? O5' CMP 401 A 1 HETATM 5 C C5' CMP . . . B 2 39.368 47.705 87.081 1 2 ? C5' CMP 401 A 1 HETATM 6 C C4' CMP . . . B 2 40.804 48.065 87.063 1 2.12 ? C4' CMP 401 A 1 HETATM 7 O O4' CMP . . . B 2 41.487 47.129 87.853 1 4.25 ? O4' CMP 401 A 1 HETATM 8 C C3' CMP . . . B 2 41.508 47.81 85.794 1 4.94 ? C3' CMP 401 A 1 HETATM 9 O O3' CMP . . . B 2 40.951 48.625 84.755 1 7.96 ? O3' CMP 401 A 1 HETATM 10 C C2' CMP . . . B 2 42.913 48.124 86.321 1 4.11 ? C2' CMP 401 A 1 HETATM 11 O O2' CMP . . . B 2 43.077 49.482 86.58 1 6.4 ? O2' CMP 401 A 1 HETATM 12 C C1' CMP . . . B 2 42.836 47.42 87.659 1 4.03 ? C1' CMP 401 A 1 HETATM 13 N N9 CMP . . . B 2 43.47 46.116 87.728 1 7.02 ? N9 CMP 401 A 1 HETATM 14 C C8 CMP . . . B 2 44.44 45.915 88.668 1 9.21 ? C8 CMP 401 A 1 HETATM 15 N N7 CMP . . . B 2 44.942 44.715 88.659 1 10.11 ? N7 CMP 401 A 1 HETATM 16 C C5 CMP . . . B 2 44.237 44.079 87.677 1 4.75 ? C5 CMP 401 A 1 HETATM 17 C C6 CMP . . . B 2 44.269 42.771 87.231 1 5.98 ? C6 CMP 401 A 1 HETATM 18 N N6 CMP . . . B 2 45.141 41.882 87.722 1 9.85 ? N6 CMP 401 A 1 HETATM 19 N N1 CMP . . . B 2 43.434 42.421 86.229 1 6.28 ? N1 CMP 401 A 1 HETATM 20 C C2 CMP . . . B 2 42.6 43.348 85.728 1 4.77 ? C2 CMP 401 A 1 HETATM 21 N N3 CMP . . . B 2 42.434 44.608 86.139 1 6.33 ? N3 CMP 401 A 1 HETATM 22 C C4 CMP . . . B 2 43.303 44.911 87.115 1 3.72 ? C4 CMP 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #