data_1RGV # _model_server_result.job_id vsW_sT8N4QR02ugbFU3QiQ _model_server_result.datetime_utc '2024-12-21 17:23:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 1RGV # _exptl.entry_id 1RGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RGV _cell.length_a 79 _cell.length_b 79 _cell.length_c 49.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 8 A CYS 8 1_555 B FE3 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 B FE4 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc3 A SG CYS 14 A CYS 14 1_555 B FE2 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc4 A SG CYS 18 A CYS 18 1_555 C FE1 SF4 . A SF4 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc5 A SG CYS 37 A CYS 37 1_555 C FE3 SF4 . A SF4 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc6 A SG CYS 40 A CYS 40 1_555 C FE4 SF4 . A SF4 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc7 A SG CYS 49 A CYS 49 1_555 C FE2 SF4 . A SF4 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc8 A SG CYS 53 A CYS 53 1_555 B FE1 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 269 n n FE1 S3 SF4 sing 270 n n FE1 S4 SF4 sing 271 n n FE2 S1 SF4 sing 272 n n FE2 S3 SF4 sing 273 n n FE2 S4 SF4 sing 274 n n FE3 S1 SF4 sing 275 n n FE3 S2 SF4 sing 276 n n FE3 S4 SF4 sing 277 n n FE4 S1 SF4 sing 278 n n FE4 S2 SF4 sing 279 n n FE4 S3 SF4 sing 280 n n # _atom_sites.entry_id 1RGV _atom_sites.fract_transf_matrix[1][1] 0.012658 _atom_sites.fract_transf_matrix[1][2] 0.007308 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 101 101 SF4 FS4 . C 2 SF4 A 1 102 102 SF4 FS4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . C 2 -15.633 44.631 37.598 1 38.49 ? FE1 SF4 102 A 1 HETATM 2 FE FE2 SF4 . . . C 2 -14.489 42.041 37.73 1 38.54 ? FE2 SF4 102 A 1 HETATM 3 FE FE3 SF4 . . . C 2 -14.413 43.78 39.842 1 38.45 ? FE3 SF4 102 A 1 HETATM 4 FE FE4 SF4 . . . C 2 -16.806 42.609 39.021 1 38.79 ? FE4 SF4 102 A 1 HETATM 5 S S1 SF4 . . . C 2 -14.876 41.525 39.887 1 37.03 ? S1 SF4 102 A 1 HETATM 6 S S2 SF4 . . . C 2 -16.376 44.551 39.667 1 38.63 ? S2 SF4 102 A 1 HETATM 7 S S3 SF4 . . . C 2 -16.421 42.489 36.826 1 37.07 ? S3 SF4 102 A 1 HETATM 8 S S4 SF4 . . . C 2 -13.417 44.066 37.975 1 37.38 ? S4 SF4 102 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #