data_1RH0 # _model_server_result.job_id WqgZmOfDQInh5k47q1SK7w _model_server_result.datetime_utc '2024-11-04 22:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":999}' # _entry.id 1RH0 # _exptl.entry_id 1RH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RH0 _cell.length_a 49.692 _cell.length_b 104.75 _cell.length_c 194.033 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,J,L 1 1 B,D,H,I,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O3' DT 3 D DT 806 1_555 E V VO4 . A VO4 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? metalc ? metalc2 B O3' DT 3 F DT 806 1_555 H V VO4 . B VO4 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? metalc ? metalc3 C NE2 HIS 140 A HIS 263 1_555 E V VO4 . A VO4 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc4 E V VO4 . A VO4 699 1_555 G O4 OTS . A OTS 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 D NE2 HIS 140 B HIS 263 1_555 H V VO4 . B VO4 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc6 H V VO4 . B VO4 699 1_555 I O4 OTS . B OTS 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 388 n n N1 HN11 SPM sing 389 n n N1 HN12 SPM sing 390 n n C2 C3 SPM sing 391 n n C2 H21 SPM sing 392 n n C2 H22 SPM sing 393 n n C3 C4 SPM sing 394 n n C3 H31 SPM sing 395 n n C3 H32 SPM sing 396 n n C4 N5 SPM sing 397 n n C4 H41 SPM sing 398 n n C4 H42 SPM sing 399 n n N5 C6 SPM sing 400 n n N5 HN5 SPM sing 401 n n C6 C7 SPM sing 402 n n C6 H61 SPM sing 403 n n C6 H62 SPM sing 404 n n C7 C8 SPM sing 405 n n C7 H71 SPM sing 406 n n C7 H72 SPM sing 407 n n C8 C9 SPM sing 408 n n C8 H81 SPM sing 409 n n C8 H82 SPM sing 410 n n C9 N10 SPM sing 411 n n C9 H91 SPM sing 412 n n C9 H92 SPM sing 413 n n N10 C11 SPM sing 414 n n N10 HN0 SPM sing 415 n n C11 C12 SPM sing 416 n n C11 H111 SPM sing 417 n n C11 H112 SPM sing 418 n n C12 C13 SPM sing 419 n n C12 H121 SPM sing 420 n n C12 H122 SPM sing 421 n n C13 N14 SPM sing 422 n n C13 H131 SPM sing 423 n n C13 H132 SPM sing 424 n n N14 HN41 SPM sing 425 n n N14 HN42 SPM sing 426 n n # _atom_sites.entry_id 1RH0 _atom_sites.fract_transf_matrix[1][1] 0.020124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 VO4 A 1 699 699 VO4 VO4 . F 4 SPM A 1 999 999 SPM SPM . G 5 OTS A 1 995 995 OTS OTS . H 3 VO4 B 1 699 699 VO4 VO4 . I 5 OTS B 1 996 996 OTS OTS . J 6 HOH D 1 675 675 HOH HOH . J 6 HOH D 2 1149 1149 HOH HOH . K 6 HOH F 1 638 638 HOH HOH . K 6 HOH F 2 1194 1194 HOH HOH . K 6 HOH F 3 1212 1212 HOH HOH . L 6 HOH A 1 616 616 HOH HOH . L 6 HOH A 2 626 626 HOH HOH . L 6 HOH A 3 627 627 HOH HOH . L 6 HOH A 4 629 629 HOH HOH . L 6 HOH A 5 633 633 HOH HOH . L 6 HOH A 6 636 636 HOH HOH . L 6 HOH A 7 639 639 HOH HOH . L 6 HOH A 8 642 642 HOH HOH . L 6 HOH A 9 647 647 HOH HOH . L 6 HOH A 10 653 653 HOH HOH . L 6 HOH A 11 667 667 HOH HOH . L 6 HOH A 12 672 672 HOH HOH . L 6 HOH A 13 679 679 HOH HOH . L 6 HOH A 14 680 680 HOH HOH . L 6 HOH A 15 684 684 HOH HOH . L 6 HOH A 16 687 687 HOH HOH . L 6 HOH A 17 688 688 HOH HOH . L 6 HOH A 18 689 689 HOH HOH . L 6 HOH A 19 690 690 HOH HOH . L 6 HOH A 20 691 691 HOH HOH . L 6 HOH A 21 692 692 HOH HOH . L 6 HOH A 22 694 694 HOH HOH . L 6 HOH A 23 701 701 HOH HOH . L 6 HOH A 24 702 702 HOH HOH . L 6 HOH A 25 706 706 HOH HOH . L 6 HOH A 26 708 708 HOH HOH . L 6 HOH A 27 713 713 HOH HOH . L 6 HOH A 28 722 722 HOH HOH . L 6 HOH A 29 758 758 HOH HOH . L 6 HOH A 30 760 760 HOH HOH . L 6 HOH A 31 763 763 HOH HOH . L 6 HOH A 32 768 768 HOH HOH . L 6 HOH A 33 770 770 HOH HOH . L 6 HOH A 34 781 781 HOH HOH . L 6 HOH A 35 789 789 HOH HOH . L 6 HOH A 36 835 835 HOH HOH . L 6 HOH A 37 852 852 HOH HOH . L 6 HOH A 38 855 855 HOH HOH . L 6 HOH A 39 856 856 HOH HOH . L 6 HOH A 40 857 857 HOH HOH . L 6 HOH A 41 858 858 HOH HOH . L 6 HOH A 42 860 860 HOH HOH . L 6 HOH A 43 861 861 HOH HOH . L 6 HOH A 44 862 862 HOH HOH . L 6 HOH A 45 870 870 HOH HOH . L 6 HOH A 46 873 873 HOH HOH . L 6 HOH A 47 874 874 HOH HOH . L 6 HOH A 48 876 876 HOH HOH . L 6 HOH A 49 908 908 HOH HOH . L 6 HOH A 50 930 930 HOH HOH . L 6 HOH A 51 931 931 HOH HOH . L 6 HOH A 52 934 934 HOH HOH . L 6 HOH A 53 945 945 HOH HOH . L 6 HOH A 54 948 948 HOH HOH . L 6 HOH A 55 1009 1009 HOH HOH . L 6 HOH A 56 1015 1015 HOH HOH . L 6 HOH A 57 1105 1105 HOH HOH . L 6 HOH A 58 1120 1120 HOH HOH . L 6 HOH A 59 1136 1136 HOH HOH . L 6 HOH A 60 1137 1137 HOH HOH . L 6 HOH A 61 1138 1138 HOH HOH . L 6 HOH A 62 1139 1139 HOH HOH . L 6 HOH A 63 1141 1141 HOH HOH . L 6 HOH A 64 1142 1142 HOH HOH . L 6 HOH A 65 1143 1143 HOH HOH . L 6 HOH A 66 1144 1144 HOH HOH . L 6 HOH A 67 1145 1145 HOH HOH . L 6 HOH A 68 1146 1146 HOH HOH . L 6 HOH A 69 1147 1147 HOH HOH . L 6 HOH A 70 1148 1148 HOH HOH . L 6 HOH A 71 1150 1150 HOH HOH . L 6 HOH A 72 1151 1151 HOH HOH . L 6 HOH A 73 1152 1152 HOH HOH . L 6 HOH A 74 1153 1153 HOH HOH . L 6 HOH A 75 1154 1154 HOH HOH . L 6 HOH A 76 1155 1155 HOH HOH . L 6 HOH A 77 1156 1156 HOH HOH . L 6 HOH A 78 1157 1157 HOH HOH . L 6 HOH A 79 1158 1158 HOH HOH . L 6 HOH A 80 1160 1160 HOH HOH . L 6 HOH A 81 1161 1161 HOH HOH . L 6 HOH A 82 1162 1162 HOH HOH . L 6 HOH A 83 1163 1163 HOH HOH . L 6 HOH A 84 1164 1164 HOH HOH . L 6 HOH A 85 1165 1165 HOH HOH . L 6 HOH A 86 1166 1166 HOH HOH . L 6 HOH A 87 1167 1167 HOH HOH . L 6 HOH A 88 1169 1169 HOH HOH . L 6 HOH A 89 1170 1170 HOH HOH . L 6 HOH A 90 1171 1171 HOH HOH . L 6 HOH A 91 1172 1172 HOH HOH . L 6 HOH A 92 1173 1173 HOH HOH . L 6 HOH A 93 1174 1174 HOH HOH . L 6 HOH A 94 1175 1175 HOH HOH . L 6 HOH A 95 1176 1176 HOH HOH . L 6 HOH A 96 1177 1177 HOH HOH . L 6 HOH A 97 1178 1178 HOH HOH . L 6 HOH A 98 1179 1179 HOH HOH . L 6 HOH A 99 1180 1180 HOH HOH . L 6 HOH A 100 1223 1223 HOH HOH . L 6 HOH A 101 1224 1224 HOH HOH . L 6 HOH A 102 1225 1225 HOH HOH . M 6 HOH B 1 613 613 HOH HOH . M 6 HOH B 2 614 614 HOH HOH . M 6 HOH B 3 615 615 HOH HOH . M 6 HOH B 4 617 617 HOH HOH . M 6 HOH B 5 618 618 HOH HOH . M 6 HOH B 6 622 622 HOH HOH . M 6 HOH B 7 624 624 HOH HOH . M 6 HOH B 8 625 625 HOH HOH . M 6 HOH B 9 628 628 HOH HOH . M 6 HOH B 10 631 631 HOH HOH . M 6 HOH B 11 632 632 HOH HOH . M 6 HOH B 12 634 634 HOH HOH . M 6 HOH B 13 635 635 HOH HOH . M 6 HOH B 14 640 640 HOH HOH . M 6 HOH B 15 641 641 HOH HOH . M 6 HOH B 16 643 643 HOH HOH . M 6 HOH B 17 645 645 HOH HOH . M 6 HOH B 18 648 648 HOH HOH . M 6 HOH B 19 649 649 HOH HOH . M 6 HOH B 20 651 651 HOH HOH . M 6 HOH B 21 652 652 HOH HOH . M 6 HOH B 22 654 654 HOH HOH . M 6 HOH B 23 661 661 HOH HOH . M 6 HOH B 24 663 663 HOH HOH . M 6 HOH B 25 668 668 HOH HOH . M 6 HOH B 26 669 669 HOH HOH . M 6 HOH B 27 673 673 HOH HOH . M 6 HOH B 28 674 674 HOH HOH . M 6 HOH B 29 676 676 HOH HOH . M 6 HOH B 30 682 682 HOH HOH . M 6 HOH B 31 686 686 HOH HOH . M 6 HOH B 32 703 703 HOH HOH . M 6 HOH B 33 726 726 HOH HOH . M 6 HOH B 34 731 731 HOH HOH . M 6 HOH B 35 737 737 HOH HOH . M 6 HOH B 36 739 739 HOH HOH . M 6 HOH B 37 744 744 HOH HOH . M 6 HOH B 38 745 745 HOH HOH . M 6 HOH B 39 746 746 HOH HOH . M 6 HOH B 40 749 749 HOH HOH . M 6 HOH B 41 753 753 HOH HOH . M 6 HOH B 42 756 756 HOH HOH . M 6 HOH B 43 765 765 HOH HOH . M 6 HOH B 44 767 767 HOH HOH . M 6 HOH B 45 798 798 HOH HOH . M 6 HOH B 46 812 812 HOH HOH . M 6 HOH B 47 819 819 HOH HOH . M 6 HOH B 48 836 836 HOH HOH . M 6 HOH B 49 837 837 HOH HOH . M 6 HOH B 50 851 851 HOH HOH . M 6 HOH B 51 864 864 HOH HOH . M 6 HOH B 52 878 878 HOH HOH . M 6 HOH B 53 882 882 HOH HOH . M 6 HOH B 54 883 883 HOH HOH . M 6 HOH B 55 886 886 HOH HOH . M 6 HOH B 56 887 887 HOH HOH . M 6 HOH B 57 888 888 HOH HOH . M 6 HOH B 58 889 889 HOH HOH . M 6 HOH B 59 890 890 HOH HOH . M 6 HOH B 60 892 892 HOH HOH . M 6 HOH B 61 893 893 HOH HOH . M 6 HOH B 62 894 894 HOH HOH . M 6 HOH B 63 899 899 HOH HOH . M 6 HOH B 64 902 902 HOH HOH . M 6 HOH B 65 923 923 HOH HOH . M 6 HOH B 66 958 958 HOH HOH . M 6 HOH B 67 961 961 HOH HOH . M 6 HOH B 68 964 964 HOH HOH . M 6 HOH B 69 969 969 HOH HOH . M 6 HOH B 70 974 974 HOH HOH . M 6 HOH B 71 975 975 HOH HOH . M 6 HOH B 72 985 985 HOH HOH . M 6 HOH B 73 987 987 HOH HOH . M 6 HOH B 74 1023 1023 HOH HOH . M 6 HOH B 75 1066 1066 HOH HOH . M 6 HOH B 76 1087 1087 HOH HOH . M 6 HOH B 77 1098 1098 HOH HOH . M 6 HOH B 78 1126 1126 HOH HOH . M 6 HOH B 79 1135 1135 HOH HOH . M 6 HOH B 80 1159 1159 HOH HOH . M 6 HOH B 81 1181 1181 HOH HOH . M 6 HOH B 82 1182 1182 HOH HOH . M 6 HOH B 83 1183 1183 HOH HOH . M 6 HOH B 84 1184 1184 HOH HOH . M 6 HOH B 85 1185 1185 HOH HOH . M 6 HOH B 86 1186 1186 HOH HOH . M 6 HOH B 87 1187 1187 HOH HOH . M 6 HOH B 88 1188 1188 HOH HOH . M 6 HOH B 89 1189 1189 HOH HOH . M 6 HOH B 90 1190 1190 HOH HOH . M 6 HOH B 91 1191 1191 HOH HOH . M 6 HOH B 92 1192 1192 HOH HOH . M 6 HOH B 93 1193 1193 HOH HOH . M 6 HOH B 94 1195 1195 HOH HOH . M 6 HOH B 95 1196 1196 HOH HOH . M 6 HOH B 96 1197 1197 HOH HOH . M 6 HOH B 97 1198 1198 HOH HOH . M 6 HOH B 98 1199 1199 HOH HOH . M 6 HOH B 99 1200 1200 HOH HOH . M 6 HOH B 100 1201 1201 HOH HOH . M 6 HOH B 101 1202 1202 HOH HOH . M 6 HOH B 102 1203 1203 HOH HOH . M 6 HOH B 103 1204 1204 HOH HOH . M 6 HOH B 104 1205 1205 HOH HOH . M 6 HOH B 105 1206 1206 HOH HOH . M 6 HOH B 106 1207 1207 HOH HOH . M 6 HOH B 107 1208 1208 HOH HOH . M 6 HOH B 108 1209 1209 HOH HOH . M 6 HOH B 109 1210 1210 HOH HOH . M 6 HOH B 110 1211 1211 HOH HOH . M 6 HOH B 111 1213 1213 HOH HOH . M 6 HOH B 112 1214 1214 HOH HOH . M 6 HOH B 113 1215 1215 HOH HOH . M 6 HOH B 114 1216 1216 HOH HOH . M 6 HOH B 115 1217 1217 HOH HOH . M 6 HOH B 116 1218 1218 HOH HOH . M 6 HOH B 117 1219 1219 HOH HOH . M 6 HOH B 118 1220 1220 HOH HOH . M 6 HOH B 119 1221 1221 HOH HOH . M 6 HOH B 120 1222 1222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . . . F 4 0.114 57.286 -22.624 1 27.92 ? N1 SPM 999 A 1 HETATM 2 C C2 SPM . . . F 4 0.345 56.491 -21.423 1 27.26 ? C2 SPM 999 A 1 HETATM 3 C C3 SPM . . . F 4 1.345 57.18 -20.525 1 28.44 ? C3 SPM 999 A 1 HETATM 4 C C4 SPM . . . F 4 2.259 56.203 -19.778 1 31.65 ? C4 SPM 999 A 1 HETATM 5 N N5 SPM . . . F 4 2.075 56.26 -18.342 1 31.09 ? N5 SPM 999 A 1 HETATM 6 C C6 SPM . . . F 4 2.754 55.326 -17.474 1 36.66 ? C6 SPM 999 A 1 HETATM 7 C C7 SPM . . . F 4 3.821 55.993 -16.61 1 40.7 ? C7 SPM 999 A 1 HETATM 8 C C8 SPM . . . F 4 4.386 55.043 -15.56 1 45.64 ? C8 SPM 999 A 1 HETATM 9 C C9 SPM . . . F 4 5.136 53.879 -16.197 1 50.06 ? C9 SPM 999 A 1 HETATM 10 N N10 SPM . . . F 4 6.56 53.907 -15.89 1 52.74 ? N10 SPM 999 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #