data_1RH3
#
_model_server_result.job_id            xDGlq1elxBEPguUg_uB1rQ 
_model_server_result.datetime_utc      '2025-04-23 10:15:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rh3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":161}' 
#
_entry.id    1RH3 
#
_exptl.entry_id    1RH3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1RH3 
_cell.length_a            62.526 
_cell.length_b            62.526 
_cell.length_c            105.774 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RH3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 237 n y 
N1 C8A MTX sing 238 n y 
C2 NA2 MTX sing 239 n n 
C2 N3 MTX sing 240 n y 
NA2 HN21 MTX sing 241 n n 
NA2 HN22 MTX sing 242 n n 
N3 C4 MTX doub 243 n y 
C4 NA4 MTX sing 244 n n 
C4 C4A MTX sing 245 n y 
NA4 HN41 MTX sing 246 n n 
NA4 HN42 MTX sing 247 n n 
C4A N5 MTX sing 248 n y 
C4A C8A MTX doub 249 n y 
N5 C6 MTX doub 250 n y 
C6 C7 MTX sing 251 n y 
C6 C9 MTX sing 252 n n 
C7 N8 MTX doub 253 n y 
C7 H7 MTX sing 254 n n 
N8 C8A MTX sing 255 n y 
C9 N10 MTX sing 256 n n 
C9 H91 MTX sing 257 n n 
C9 H92 MTX sing 258 n n 
N10 CM MTX sing 259 n n 
N10 C14 MTX sing 260 n n 
CM HM1 MTX sing 261 n n 
CM HM2 MTX sing 262 n n 
CM HM3 MTX sing 263 n n 
C11 C12 MTX doub 264 n y 
C11 C16 MTX sing 265 n y 
C11 C MTX sing 266 n n 
C12 C13 MTX sing 267 n y 
C12 H12 MTX sing 268 n n 
C13 C14 MTX doub 269 n y 
C13 H13 MTX sing 270 n n 
C14 C15 MTX sing 271 n y 
C15 C16 MTX doub 272 n y 
C15 H15 MTX sing 273 n n 
C16 H16 MTX sing 274 n n 
C O MTX doub 275 n n 
C N MTX sing 276 n n 
N CA MTX sing 277 n n 
N HN MTX sing 278 n n 
CA CT MTX sing 279 n n 
CA CB MTX sing 280 n n 
CA HA MTX sing 281 n n 
CT O1 MTX doub 282 n n 
CT O2 MTX sing 283 n n 
O2 HO2 MTX sing 284 n n 
CB CG MTX sing 285 n n 
CB HB1 MTX sing 286 n n 
CB HB2 MTX sing 287 n n 
CG CD MTX sing 288 n n 
CG HG1 MTX sing 289 n n 
CG HG2 MTX sing 290 n n 
CD OE1 MTX doub 291 n n 
CD OE2 MTX sing 292 n n 
OE2 HOE2 MTX sing 293 n n 
#
_atom_sites.entry_id                     1RH3 
_atom_sites.fract_transf_matrix[1][1]    0.015993 
_atom_sites.fract_transf_matrix[1][2]    0.009234 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018468 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTX A 1 161 161 MTX MTX . 
C 3 NAP A 1 164 164 NAP NAP . 
D 4 HOH A 1 203 203 HOH HOH . 
D 4 HOH A 2 204 204 HOH HOH . 
D 4 HOH A 3 205 205 HOH HOH . 
D 4 HOH A 4 209 209 HOH HOH . 
D 4 HOH A 5 210 210 HOH HOH . 
D 4 HOH A 6 211 211 HOH HOH . 
D 4 HOH A 7 212 212 HOH HOH . 
D 4 HOH A 8 214 214 HOH HOH . 
D 4 HOH A 9 215 215 HOH HOH . 
D 4 HOH A 10 216 216 HOH HOH . 
D 4 HOH A 11 221 221 HOH HOH . 
D 4 HOH A 12 222 222 HOH HOH . 
D 4 HOH A 13 223 223 HOH HOH . 
D 4 HOH A 14 224 224 HOH HOH . 
D 4 HOH A 15 225 225 HOH HOH . 
D 4 HOH A 16 226 226 HOH HOH . 
D 4 HOH A 17 228 228 HOH HOH . 
D 4 HOH A 18 229 229 HOH HOH . 
D 4 HOH A 19 230 230 HOH HOH . 
D 4 HOH A 20 231 231 HOH HOH . 
D 4 HOH A 21 232 232 HOH HOH . 
D 4 HOH A 22 233 233 HOH HOH . 
D 4 HOH A 23 239 239 HOH HOH . 
D 4 HOH A 24 240 240 HOH HOH . 
D 4 HOH A 25 241 241 HOH HOH . 
D 4 HOH A 26 242 242 HOH HOH . 
D 4 HOH A 27 243 243 HOH HOH . 
D 4 HOH A 28 244 244 HOH HOH . 
D 4 HOH A 29 245 245 HOH HOH . 
D 4 HOH A 30 246 246 HOH HOH . 
D 4 HOH A 31 247 247 HOH HOH . 
D 4 HOH A 32 248 248 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . B 2 18.992 20.552 38.497 1 24.37 ? N1 MTX 161 A 1 
HETATM 2 C C2 MTX . . . B 2 17.671 20.29 38.473 1 24.38 ? C2 MTX 161 A 1 
HETATM 3 N NA2 MTX . . . B 2 16.995 19.838 39.47 1 23.72 ? NA2 MTX 161 A 1 
HETATM 4 N N3 MTX . . . B 2 16.951 20.529 37.273 1 28.9 ? N3 MTX 161 A 1 
HETATM 5 C C4 MTX . . . B 2 17.508 21.009 36.132 1 25.09 ? C4 MTX 161 A 1 
HETATM 6 N NA4 MTX . . . B 2 16.843 21.222 35.054 1 31.89 ? NA4 MTX 161 A 1 
HETATM 7 C C4A MTX . . . B 2 18.906 21.263 36.187 1 23.15 ? C4A MTX 161 A 1 
HETATM 8 N N5 MTX . . . B 2 19.46 21.608 35.023 1 26.86 ? N5 MTX 161 A 1 
HETATM 9 C C6 MTX . . . B 2 20.784 21.723 35.047 1 26.56 ? C6 MTX 161 A 1 
HETATM 10 C C7 MTX . . . B 2 21.471 21.452 36.239 1 22.96 ? C7 MTX 161 A 1 
HETATM 11 N N8 MTX . . . B 2 20.927 21.105 37.379 1 31.42 ? N8 MTX 161 A 1 
HETATM 12 C C8A MTX . . . B 2 19.586 21.027 37.319 1 27.26 ? C8A MTX 161 A 1 
HETATM 13 C C9 MTX . . . B 2 21.408 22.119 33.778 1 26.85 ? C9 MTX 161 A 1 
HETATM 14 N N10 MTX . . . B 2 22.856 21.913 33.895 1 19.65 ? N10 MTX 161 A 1 
HETATM 15 C CM MTX . . . B 2 23.766 23.056 33.672 1 21.94 ? CM MTX 161 A 1 
HETATM 16 C C11 MTX . . . B 2 24.501 18.161 34.236 1 13.62 ? C11 MTX 161 A 1 
HETATM 17 C C12 MTX . . . B 2 25.26 19.309 34.254 1 7.6 ? C12 MTX 161 A 1 
HETATM 18 C C13 MTX . . . B 2 24.702 20.511 34.143 1 13.79 ? C13 MTX 161 A 1 
HETATM 19 C C14 MTX . . . B 2 23.315 20.617 34.013 1 9.94 ? C14 MTX 161 A 1 
HETATM 20 C C15 MTX . . . B 2 22.505 19.542 33.983 1 12.81 ? C15 MTX 161 A 1 
HETATM 21 C C16 MTX . . . B 2 23.126 18.285 34.114 1 14.05 ? C16 MTX 161 A 1 
HETATM 22 C C MTX . . . B 2 25.119 16.845 34.394 1 26 ? C MTX 161 A 1 
HETATM 23 O O MTX . . . B 2 26.327 16.733 34.631 1 26.07 ? O MTX 161 A 1 
HETATM 24 N N MTX . . . B 2 24.408 15.83 34.68 1 26.95 ? N MTX 161 A 1 
HETATM 25 C CA MTX . . . B 2 25.014 14.528 35.009 1 32.6 ? CA MTX 161 A 1 
HETATM 26 C CT MTX . . . B 2 23.977 13.511 34.603 1 34.86 ? CT MTX 161 A 1 
HETATM 27 O O1 MTX . . . B 2 22.74 13.776 34.541 1 31.51 ? O1 MTX 161 A 1 
HETATM 28 O O2 MTX . . . B 2 24.45 12.441 34.297 1 43.56 ? O2 MTX 161 A 1 
HETATM 29 C CB MTX . . . B 2 25.183 14.399 36.577 1 50 ? CB MTX 161 A 1 
HETATM 30 C CG MTX . . . B 2 26.642 14.079 37.252 1 63.27 ? CG MTX 161 A 1 
HETATM 31 C CD MTX . . . B 2 27.816 15.089 36.949 1 85.49 ? CD MTX 161 A 1 
HETATM 32 O OE1 MTX . . . B 2 28.917 14.486 37.005 1 96.25 ? OE1 MTX 161 A 1 
HETATM 33 O OE2 MTX . . . B 2 27.688 16.305 36.653 1 90.16 ? OE2 MTX 161 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           33 
#