data_1RH3 # _model_server_result.job_id dmvZizLkiEa4j963j2w2Jg _model_server_result.datetime_utc '2024-11-09 02:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":164}' # _entry.id 1RH3 # _exptl.entry_id 1RH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RH3 _cell.length_a 62.526 _cell.length_b 62.526 _cell.length_c 105.774 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 63 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 63 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id O1X _struct_conn.ptnr2_label_comp_id NAP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAP _struct_conn.ptnr2_auth_seq_id 164 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.278 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # _atom_sites.entry_id 1RH3 _atom_sites.fract_transf_matrix[1][1] 0.015993 _atom_sites.fract_transf_matrix[1][2] 0.009234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 161 161 MTX MTX . C 3 NAP A 1 164 164 NAP NAP . D 4 HOH A 1 203 203 HOH HOH . D 4 HOH A 2 204 204 HOH HOH . D 4 HOH A 3 205 205 HOH HOH . D 4 HOH A 4 209 209 HOH HOH . D 4 HOH A 5 210 210 HOH HOH . D 4 HOH A 6 211 211 HOH HOH . D 4 HOH A 7 212 212 HOH HOH . D 4 HOH A 8 214 214 HOH HOH . D 4 HOH A 9 215 215 HOH HOH . D 4 HOH A 10 216 216 HOH HOH . D 4 HOH A 11 221 221 HOH HOH . D 4 HOH A 12 222 222 HOH HOH . D 4 HOH A 13 223 223 HOH HOH . D 4 HOH A 14 224 224 HOH HOH . D 4 HOH A 15 225 225 HOH HOH . D 4 HOH A 16 226 226 HOH HOH . D 4 HOH A 17 228 228 HOH HOH . D 4 HOH A 18 229 229 HOH HOH . D 4 HOH A 19 230 230 HOH HOH . D 4 HOH A 20 231 231 HOH HOH . D 4 HOH A 21 232 232 HOH HOH . D 4 HOH A 22 233 233 HOH HOH . D 4 HOH A 23 239 239 HOH HOH . D 4 HOH A 24 240 240 HOH HOH . D 4 HOH A 25 241 241 HOH HOH . D 4 HOH A 26 242 242 HOH HOH . D 4 HOH A 27 243 243 HOH HOH . D 4 HOH A 28 244 244 HOH HOH . D 4 HOH A 29 245 245 HOH HOH . D 4 HOH A 30 246 246 HOH HOH . D 4 HOH A 31 247 247 HOH HOH . D 4 HOH A 32 248 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 17.246 28.552 27.541 1 41.06 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . C 3 15.773 28.477 27.625 1 30.83 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . C 3 18.099 27.481 28.082 1 48.77 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . C 3 17.761 29.02 26.103 1 53.7 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . C 3 16.92 29.833 25.241 1 50.1 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . C 3 17.142 29.662 23.755 1 50.58 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . C 3 16.115 28.819 23.292 1 56.07 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . C 3 16.724 30.878 22.91 1 50.68 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . C 3 17.798 31.769 22.98 1 50.1 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . C 3 16.425 30.383 21.479 1 59.46 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . C 3 17.54 29.96 20.714 1 64.45 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . C 3 15.888 29 21.877 1 59.1 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . C 3 14.497 28.772 21.919 1 63.65 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . C 3 13.639 28.791 22.993 1 64.09 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . C 3 12.412 28.502 22.71 1 65.83 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . C 3 12.442 28.254 21.355 1 67.1 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . C 3 11.471 27.896 20.452 1 69.91 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . C 3 10.181 27.698 20.737 1 69.39 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . C 3 11.843 27.724 19.172 1 76.1 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . C 3 13.115 27.92 18.872 1 81.59 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . C 3 14.139 28.266 19.645 1 78.71 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . C 3 13.728 28.41 20.859 1 69.16 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . C 3 17.873 29.925 28.06 1 41.65 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . C 3 17.477 30.891 29.296 1 42.97 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . C 3 16.006 30.969 29.332 1 28.91 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . C 3 18.298 32.129 29.197 1 27.95 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . C 3 18.033 29.93 30.463 1 53.95 ? O5D NAP 164 A 1 HETATM 28 C C5D NAP . . . C 3 19.419 30.04 31.063 1 39.96 ? C5D NAP 164 A 1 HETATM 29 C C4D NAP . . . C 3 19.546 30.031 32.633 1 25.96 ? C4D NAP 164 A 1 HETATM 30 O O4D NAP . . . C 3 18.757 28.84 33.051 1 30.57 ? O4D NAP 164 A 1 HETATM 31 C C3D NAP . . . C 3 20.978 29.655 33.14 1 21.4 ? C3D NAP 164 A 1 HETATM 32 O O3D NAP . . . C 3 21.759 30.359 34.03 1 37.19 ? O3D NAP 164 A 1 HETATM 33 C C2D NAP . . . C 3 20.985 28.126 33.389 1 28.49 ? C2D NAP 164 A 1 HETATM 34 O O2D NAP . . . C 3 22.097 27.695 34.061 1 40.3 ? O2D NAP 164 A 1 HETATM 35 C C1D NAP . . . C 3 19.666 28.13 33.962 1 28.55 ? C1D NAP 164 A 1 HETATM 36 N N1N NAP . . . C 3 19.017 26.744 34.115 1 35.49 ? N1N NAP 164 A 1 HETATM 37 C C2N NAP . . . C 3 18.662 26.43 35.431 1 36.71 ? C2N NAP 164 A 1 HETATM 38 C C3N NAP . . . C 3 18.088 25.27 35.671 1 35.3 ? C3N NAP 164 A 1 HETATM 39 C C7N NAP . . . C 3 17.829 25.199 37.106 1 21.4 ? C7N NAP 164 A 1 HETATM 40 O O7N NAP . . . C 3 16.937 24.433 37.543 1 20.74 ? O7N NAP 164 A 1 HETATM 41 N N7N NAP . . . C 3 18.366 26.121 37.898 1 22.63 ? N7N NAP 164 A 1 HETATM 42 C C4N NAP . . . C 3 17.72 24.168 34.621 1 42.56 ? C4N NAP 164 A 1 HETATM 43 C C5N NAP . . . C 3 18.185 24.725 33.269 1 39.36 ? C5N NAP 164 A 1 HETATM 44 C C6N NAP . . . C 3 18.747 25.866 33.089 1 36.72 ? C6N NAP 164 A 1 HETATM 45 P P2B NAP . . . C 3 18.569 30.664 19.611 1 62.22 ? P2B NAP 164 A 1 HETATM 46 O O1X NAP . . . C 3 18.401 29.435 18.66 1 65.3 ? O1X NAP 164 A 1 HETATM 47 O O2X NAP . . . C 3 18.008 31.97 19.093 1 77.82 ? O2X NAP 164 A 1 HETATM 48 O O3X NAP . . . C 3 20.04 30.841 20.002 1 53.34 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #