data_1RHM # _model_server_result.job_id K-URSEAeKq-oGuXwdv6ChA _model_server_result.datetime_utc '2024-10-19 16:35:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rhm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 1RHM # _exptl.entry_id 1RHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.303 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[5-(2-CARBOXY-1-FORMYL-ETHYLCARBAMOYL)-PYRIDIN-3-YL]-BENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 129.2 _cell.angle_gamma 90 _cell.entry_id 1RHM _cell.length_a 125.065 _cell.length_b 70.902 _cell.length_c 86.567 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -109.425761 0 134.169239 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 135 A CYS 285 1_555 E C4 NA4 . A NA4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? covale ? covale2 F C4 NA4 . C NA4 502 1_555 C SG CYS 135 C CYS 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? # _chem_comp.formula 'C17 H14 N2 O6' _chem_comp.formula_weight 342.303 _chem_comp.id NA4 _chem_comp.mon_nstd_flag . _chem_comp.name '4-[5-(2-CARBOXY-1-FORMYL-ETHYLCARBAMOYL)-PYRIDIN-3-YL]-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 NA4 doub 237 n y C7 C6 NA4 sing 238 n y C7 H7 NA4 sing 239 n n C8 C9 NA4 sing 240 n y C8 C11 NA4 sing 241 n y C9 N2 NA4 doub 242 n y C9 H9 NA4 sing 243 n n N2 C10 NA4 sing 244 n y C10 C6 NA4 doub 245 n y C10 H10 NA4 sing 246 n n C6 C5 NA4 sing 247 n n C5 O4 NA4 doub 248 n n C5 N1 NA4 sing 249 n n N1 C3 NA4 sing 250 n n N1 HN1 NA4 sing 251 n n C3 C2 NA4 sing 252 n n C3 C4 NA4 sing 253 n n C3 H3 NA4 sing 254 n n C2 C1 NA4 sing 255 n n C2 H21 NA4 sing 256 n n C2 H22 NA4 sing 257 n n C4 O3 NA4 doub 258 n n C4 H4 NA4 sing 259 n n C1 O2 NA4 doub 260 n n C1 O1 NA4 sing 261 n n O1 HO1 NA4 sing 262 n n C15 C16 NA4 doub 263 n y C15 C14 NA4 sing 264 n y C15 H15 NA4 sing 265 n n C16 C11 NA4 sing 266 n y C16 H16 NA4 sing 267 n n C11 C12 NA4 doub 268 n y C12 C13 NA4 sing 269 n y C12 H12 NA4 sing 270 n n C13 C14 NA4 doub 271 n y C13 H13 NA4 sing 272 n n C14 C17 NA4 sing 273 n n C17 O5 NA4 sing 274 n n C17 O6 NA4 doub 275 n n O5 HO5 NA4 sing 276 n n # _atom_sites.entry_id 1RHM _atom_sites.fract_transf_matrix[1][1] 0.007996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006521 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA4 A 1 501 501 NA4 NA4 . F 3 NA4 C 1 502 502 NA4 NA4 . G 4 HOH A 1 502 5 HOH HOH . G 4 HOH A 2 503 6 HOH HOH . G 4 HOH A 3 504 12 HOH HOH . G 4 HOH A 4 505 23 HOH HOH . G 4 HOH A 5 506 29 HOH HOH . G 4 HOH A 6 507 30 HOH HOH . G 4 HOH A 7 508 37 HOH HOH . G 4 HOH A 8 509 38 HOH HOH . G 4 HOH A 9 510 41 HOH HOH . G 4 HOH A 10 511 44 HOH HOH . G 4 HOH A 11 512 45 HOH HOH . G 4 HOH A 12 513 47 HOH HOH . G 4 HOH A 13 514 48 HOH HOH . G 4 HOH A 14 515 57 HOH HOH . G 4 HOH A 15 516 58 HOH HOH . G 4 HOH A 16 517 59 HOH HOH . G 4 HOH A 17 518 63 HOH HOH . G 4 HOH A 18 519 64 HOH HOH . G 4 HOH A 19 520 68 HOH HOH . G 4 HOH A 20 521 69 HOH HOH . G 4 HOH A 21 522 73 HOH HOH . G 4 HOH A 22 523 75 HOH HOH . G 4 HOH A 23 524 82 HOH HOH . G 4 HOH A 24 525 83 HOH HOH . G 4 HOH A 25 526 86 HOH HOH . G 4 HOH A 26 527 89 HOH HOH . G 4 HOH A 27 528 91 HOH HOH . G 4 HOH A 28 529 92 HOH HOH . G 4 HOH A 29 530 95 HOH HOH . G 4 HOH A 30 531 96 HOH HOH . G 4 HOH A 31 532 98 HOH HOH . G 4 HOH A 32 533 100 HOH HOH . G 4 HOH A 33 534 105 HOH HOH . G 4 HOH A 34 535 107 HOH HOH . G 4 HOH A 35 536 113 HOH HOH . G 4 HOH A 36 537 116 HOH HOH . G 4 HOH A 37 538 119 HOH HOH . G 4 HOH A 38 539 120 HOH HOH . G 4 HOH A 39 540 124 HOH HOH . G 4 HOH A 40 541 131 HOH HOH . G 4 HOH A 41 542 134 HOH HOH . G 4 HOH A 42 543 136 HOH HOH . G 4 HOH A 43 544 145 HOH HOH . G 4 HOH A 44 545 147 HOH HOH . G 4 HOH A 45 546 148 HOH HOH . G 4 HOH A 46 547 149 HOH HOH . G 4 HOH A 47 548 151 HOH HOH . G 4 HOH A 48 549 154 HOH HOH . G 4 HOH A 49 550 161 HOH HOH . G 4 HOH A 50 551 166 HOH HOH . H 4 HOH B 1 1 1 HOH HOH . H 4 HOH B 2 8 8 HOH HOH . H 4 HOH B 3 10 10 HOH HOH . H 4 HOH B 4 15 15 HOH HOH . H 4 HOH B 5 16 16 HOH HOH . H 4 HOH B 6 20 20 HOH HOH . H 4 HOH B 7 26 26 HOH HOH . H 4 HOH B 8 34 34 HOH HOH . H 4 HOH B 9 35 35 HOH HOH . H 4 HOH B 10 51 51 HOH HOH . H 4 HOH B 11 52 52 HOH HOH . H 4 HOH B 12 53 53 HOH HOH . H 4 HOH B 13 61 61 HOH HOH . H 4 HOH B 14 76 76 HOH HOH . H 4 HOH B 15 77 77 HOH HOH . H 4 HOH B 16 81 81 HOH HOH . H 4 HOH B 17 90 90 HOH HOH . H 4 HOH B 18 101 101 HOH HOH . H 4 HOH B 19 106 106 HOH HOH . H 4 HOH B 20 114 114 HOH HOH . H 4 HOH B 21 127 127 HOH HOH . H 4 HOH B 22 129 129 HOH HOH . H 4 HOH B 23 135 135 HOH HOH . H 4 HOH B 24 137 137 HOH HOH . H 4 HOH B 25 143 143 HOH HOH . H 4 HOH B 26 153 153 HOH HOH . H 4 HOH B 27 163 163 HOH HOH . H 4 HOH B 28 164 164 HOH HOH . I 4 HOH C 1 4 4 HOH HOH . I 4 HOH C 2 7 7 HOH HOH . I 4 HOH C 3 17 17 HOH HOH . I 4 HOH C 4 19 19 HOH HOH . I 4 HOH C 5 24 24 HOH HOH . I 4 HOH C 6 25 25 HOH HOH . I 4 HOH C 7 28 28 HOH HOH . I 4 HOH C 8 31 31 HOH HOH . I 4 HOH C 9 39 39 HOH HOH . I 4 HOH C 10 40 40 HOH HOH . I 4 HOH C 11 42 42 HOH HOH . I 4 HOH C 12 43 43 HOH HOH . I 4 HOH C 13 46 46 HOH HOH . I 4 HOH C 14 49 49 HOH HOH . I 4 HOH C 15 50 50 HOH HOH . I 4 HOH C 16 54 54 HOH HOH . I 4 HOH C 17 55 55 HOH HOH . I 4 HOH C 18 56 56 HOH HOH . I 4 HOH C 19 60 60 HOH HOH . I 4 HOH C 20 62 62 HOH HOH . I 4 HOH C 21 65 65 HOH HOH . I 4 HOH C 22 67 67 HOH HOH . I 4 HOH C 23 70 70 HOH HOH . I 4 HOH C 24 78 78 HOH HOH . I 4 HOH C 25 79 79 HOH HOH . I 4 HOH C 26 85 85 HOH HOH . I 4 HOH C 27 87 87 HOH HOH . I 4 HOH C 28 88 88 HOH HOH . I 4 HOH C 29 93 93 HOH HOH . I 4 HOH C 30 94 94 HOH HOH . I 4 HOH C 31 97 97 HOH HOH . I 4 HOH C 32 99 99 HOH HOH . I 4 HOH C 33 103 103 HOH HOH . I 4 HOH C 34 104 104 HOH HOH . I 4 HOH C 35 109 109 HOH HOH . I 4 HOH C 36 110 110 HOH HOH . I 4 HOH C 37 112 112 HOH HOH . I 4 HOH C 38 115 115 HOH HOH . I 4 HOH C 39 117 117 HOH HOH . I 4 HOH C 40 121 121 HOH HOH . I 4 HOH C 41 123 123 HOH HOH . I 4 HOH C 42 125 125 HOH HOH . I 4 HOH C 43 128 128 HOH HOH . I 4 HOH C 44 140 140 HOH HOH . I 4 HOH C 45 141 141 HOH HOH . I 4 HOH C 46 142 142 HOH HOH . I 4 HOH C 47 144 144 HOH HOH . I 4 HOH C 48 146 146 HOH HOH . I 4 HOH C 49 152 152 HOH HOH . I 4 HOH C 50 155 155 HOH HOH . I 4 HOH C 51 156 156 HOH HOH . I 4 HOH C 52 158 158 HOH HOH . I 4 HOH C 53 160 160 HOH HOH . I 4 HOH C 54 162 162 HOH HOH . I 4 HOH C 55 167 167 HOH HOH . J 4 HOH D 1 2 2 HOH HOH . J 4 HOH D 2 3 3 HOH HOH . J 4 HOH D 3 9 9 HOH HOH . J 4 HOH D 4 11 11 HOH HOH . J 4 HOH D 5 13 13 HOH HOH . J 4 HOH D 6 14 14 HOH HOH . J 4 HOH D 7 18 18 HOH HOH . J 4 HOH D 8 21 21 HOH HOH . J 4 HOH D 9 22 22 HOH HOH . J 4 HOH D 10 27 27 HOH HOH . J 4 HOH D 11 32 32 HOH HOH . J 4 HOH D 12 33 33 HOH HOH . J 4 HOH D 13 36 36 HOH HOH . J 4 HOH D 14 66 66 HOH HOH . J 4 HOH D 15 71 71 HOH HOH . J 4 HOH D 16 72 72 HOH HOH . J 4 HOH D 17 74 74 HOH HOH . J 4 HOH D 18 80 80 HOH HOH . J 4 HOH D 19 84 84 HOH HOH . J 4 HOH D 20 102 102 HOH HOH . J 4 HOH D 21 108 108 HOH HOH . J 4 HOH D 22 111 111 HOH HOH . J 4 HOH D 23 118 118 HOH HOH . J 4 HOH D 24 122 122 HOH HOH . J 4 HOH D 25 126 126 HOH HOH . J 4 HOH D 26 130 130 HOH HOH . J 4 HOH D 27 132 132 HOH HOH . J 4 HOH D 28 133 133 HOH HOH . J 4 HOH D 29 138 138 HOH HOH . J 4 HOH D 30 139 139 HOH HOH . J 4 HOH D 31 150 150 HOH HOH . J 4 HOH D 32 157 157 HOH HOH . J 4 HOH D 33 159 159 HOH HOH . J 4 HOH D 34 165 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 NA4 . . . E 3 -44.23 38.598 90 1 27.67 ? C7 NA4 501 A 1 HETATM 2 C C8 NA4 . . . E 3 -44.213 39.477 91.047 1 29.97 ? C8 NA4 501 A 1 HETATM 3 C C9 NA4 . . . E 3 -45.371 39.718 91.755 1 29.51 ? C9 NA4 501 A 1 HETATM 4 N N2 NA4 . . . E 3 -46.528 39.132 91.468 1 27.3 ? N2 NA4 501 A 1 HETATM 5 C C10 NA4 . . . E 3 -46.538 38.271 90.439 1 26.47 ? C10 NA4 501 A 1 HETATM 6 C C6 NA4 . . . E 3 -45.42 37.96 89.671 1 25.48 ? C6 NA4 501 A 1 HETATM 7 C C5 NA4 . . . E 3 -45.458 36.885 88.623 1 23.5 ? C5 NA4 501 A 1 HETATM 8 O O4 NA4 . . . E 3 -44.438 36.416 88.117 1 22.6 ? O4 NA4 501 A 1 HETATM 9 N N1 NA4 . . . E 3 -46.691 36.509 88.286 1 21.04 ? N1 NA4 501 A 1 HETATM 10 C C3 NA4 . . . E 3 -46.976 35.445 87.333 1 22.98 ? C3 NA4 501 A 1 HETATM 11 C C2 NA4 . . . E 3 -48.133 34.56 87.822 1 23.16 ? C2 NA4 501 A 1 HETATM 12 C C4 NA4 . . . E 3 -47.057 35.855 85.81 1 22.8 ? C4 NA4 501 A 1 HETATM 13 O O3 NA4 . . . E 3 -47.066 34.683 84.976 1 21.51 ? O3 NA4 501 A 1 HETATM 14 C C1 NA4 . . . E 3 -47.876 33.977 89.215 1 23.97 ? C1 NA4 501 A 1 HETATM 15 O O2 NA4 . . . E 3 -48.826 33.515 89.888 1 24.96 ? O2 NA4 501 A 1 HETATM 16 O O1 NA4 . . . E 3 -46.712 33.951 89.64 1 24.76 ? O1 NA4 501 A 1 HETATM 17 C C15 NA4 . . . E 3 -42.131 42.456 91.826 1 39.87 ? C15 NA4 501 A 1 HETATM 18 C C16 NA4 . . . E 3 -43.225 41.652 91.583 1 37.1 ? C16 NA4 501 A 1 HETATM 19 C C11 NA4 . . . E 3 -43.04 40.344 91.211 1 33.54 ? C11 NA4 501 A 1 HETATM 20 C C12 NA4 . . . E 3 -41.765 39.827 91.075 1 35.33 ? C12 NA4 501 A 1 HETATM 21 C C13 NA4 . . . E 3 -40.669 40.628 91.318 1 37.7 ? C13 NA4 501 A 1 HETATM 22 C C14 NA4 . . . E 3 -40.856 41.947 91.692 1 40.88 ? C14 NA4 501 A 1 HETATM 23 C C17 NA4 . . . E 3 -39.756 42.785 91.931 1 42.77 ? C17 NA4 501 A 1 HETATM 24 O O5 NA4 . . . E 3 -38.616 42.292 91.778 1 43.84 ? O5 NA4 501 A 1 HETATM 25 O O6 NA4 . . . E 3 -39.99 43.969 92.278 1 43.46 ? O6 NA4 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #