data_1RHQ # _model_server_result.job_id gvROHnVLLdNENmtolM2JCg _model_server_result.datetime_utc '2025-02-26 21:50:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rhq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":551}' # _entry.id 1RHQ # _exptl.entry_id 1RHQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ;BOP covalently bound to the N-terminus, PTF covalently bound to the C-terminus The inhibitor was chemically synthesized. ; _entity.formula_weight 581.519 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-S-benzyl-3-({N-[(5-bromo-2-methoxyphenyl)acetyl]-L-valyl}amino)-2,3-dideoxy-5-thio-D-erythro-pentonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.06 _cell.angle_gamma 90 _cell.entry_id 1RHQ _cell.length_a 110.3 _cell.length_b 96.9 _cell.length_c 70.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 135 A CYS 285 1_555 E C9 0ZZ . A 0ZZ 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? covale ? covale2 C SG CYS 135 D CYS 285 1_555 F C9 0ZZ . D 0ZZ 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? # _chem_comp.formula 'C26 H33 Br N2 O6 S' _chem_comp.formula_weight 581.519 _chem_comp.id 0ZZ _chem_comp.mon_nstd_flag . _chem_comp.name '5-S-benzyl-3-({N-[(5-bromo-2-methoxyphenyl)acetyl]-L-valyl}amino)-2,3-dideoxy-5-thio-D-erythro-pentonic acid' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 0ZZ doub 1 n y C2 O1 0ZZ sing 2 n n C2 C1 0ZZ sing 3 n y C3 C4 0ZZ sing 4 n y C3 H3 0ZZ sing 5 n n C4 C5 0ZZ doub 6 n y C4 H4 0ZZ sing 7 n n C5 C6 0ZZ sing 8 n y C5 BR1 0ZZ sing 9 n n C6 C1 0ZZ doub 10 n y C6 H6 0ZZ sing 11 n n O1 C7 0ZZ sing 12 n n C7 H71 0ZZ sing 13 n n C7 H72 0ZZ sing 14 n n C7 H73 0ZZ sing 15 n n C1 CH3 0ZZ sing 16 n n C O 0ZZ doub 17 n n C CH3 0ZZ sing 18 n n C N 0ZZ sing 19 n n CH3 H1 0ZZ sing 20 n n CH3 H2 0ZZ sing 21 n n N CA 0ZZ sing 22 n n N H 0ZZ sing 23 n n CA C8 0ZZ sing 24 n n CA CB 0ZZ sing 25 n n CA HA 0ZZ sing 26 n n C8 O2 0ZZ doub 27 n n C8 N1 0ZZ sing 28 n n CB CG1 0ZZ sing 29 n n CB CG2 0ZZ sing 30 n n CB HB 0ZZ sing 31 n n CG1 HG11 0ZZ sing 32 n n CG1 HG12 0ZZ sing 33 n n CG1 HG13 0ZZ sing 34 n n CG2 HG21 0ZZ sing 35 n n CG2 HG22 0ZZ sing 36 n n CG2 HG23 0ZZ sing 37 n n N1 CA1 0ZZ sing 38 n n N1 H5 0ZZ sing 39 n n CA1 C9 0ZZ sing 40 n n CA1 CB1 0ZZ sing 41 n n CA1 HA1 0ZZ sing 42 n n C9 O3 0ZZ sing 43 n n C9 C11 0ZZ sing 44 n n CB1 CG 0ZZ sing 45 n n CB1 HB2 0ZZ sing 46 n n CB1 HB3 0ZZ sing 47 n n CG OD1 0ZZ doub 48 n n CG OD2 0ZZ sing 49 n n OD2 HD2 0ZZ sing 50 n n C11 S2 0ZZ sing 51 n n C11 H11 0ZZ sing 52 n n C11 H12 0ZZ sing 53 n n S2 C31 0ZZ sing 54 n n C31 C41 0ZZ sing 55 n n C31 H31 0ZZ sing 56 n n C31 H32 0ZZ sing 57 n n C41 C51 0ZZ doub 58 n y C41 C91 0ZZ sing 59 n y C51 C61 0ZZ sing 60 n y C51 H51 0ZZ sing 61 n n C61 C71 0ZZ doub 62 n y C61 H61 0ZZ sing 63 n n C71 C81 0ZZ sing 64 n y C71 H7 0ZZ sing 65 n n C81 C91 0ZZ doub 66 n y C81 H8 0ZZ sing 67 n n C91 H9 0ZZ sing 68 n n C9 H80 0ZZ sing 69 n n O3 H81 0ZZ sing 70 n n # _atom_sites.entry_id 1RHQ _atom_sites.fract_transf_matrix[1][1] 0.009066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007099 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 0ZZ A 1 551 551 0ZZ BOP . F 3 0ZZ D 1 551 551 0ZZ BOP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 0ZZ . . . E 3 47.648 30.827 97.591 1 22.47 ? C2 0ZZ 551 A 1 HETATM 2 C C3 0ZZ . . . E 3 47.066 30.944 98.863 1 22.47 ? C3 0ZZ 551 A 1 HETATM 3 C C4 0ZZ . . . E 3 47.846 31.051 100.003 1 22.47 ? C4 0ZZ 551 A 1 HETATM 4 C C5 0ZZ . . . E 3 49.24 31.05 99.923 1 22.47 ? C5 0ZZ 551 A 1 HETATM 5 C C6 0ZZ . . . E 3 49.835 30.953 98.652 1 22.47 ? C6 0ZZ 551 A 1 HETATM 6 O O1 0ZZ . . . E 3 46.812 30.58 96.439 1 22.47 ? O1 0ZZ 551 A 1 HETATM 7 C C7 0ZZ . . . E 3 46.684 31.561 95.364 1 22.47 ? C7 0ZZ 551 A 1 HETATM 8 BR BR1 0ZZ . . . E 3 50.319 31.065 101.522 1 22.47 ? BR1 0ZZ 551 A 1 HETATM 9 C C1 0ZZ . . . E 3 49.052 30.844 97.488 1 22.47 ? C1 0ZZ 551 A 1 HETATM 10 C C 0ZZ . . . E 3 50.041 29.262 95.749 1 7.03 ? C 0ZZ 551 A 1 HETATM 11 O O 0ZZ . . . E 3 50.998 28.711 96.268 1 7.03 ? O 0ZZ 551 A 1 HETATM 12 C CH3 0ZZ . . . E 3 49.701 30.699 96.123 1 7.03 ? CH3 0ZZ 551 A 1 HETATM 13 N N 0ZZ . . . E 3 49.265 28.659 94.845 1 24.57 ? N 0ZZ 551 A 1 HETATM 14 C CA 0ZZ . . . E 3 49.473 27.267 94.423 1 24.57 ? CA 0ZZ 551 A 1 HETATM 15 C C8 0ZZ . . . E 3 49.9 27.07 92.956 1 24.57 ? C8 0ZZ 551 A 1 HETATM 16 O O2 0ZZ . . . E 3 49.74 27.966 92.118 1 24.57 ? O2 0ZZ 551 A 1 HETATM 17 C CB 0ZZ . . . E 3 48.188 26.447 94.615 1 7.03 ? CB 0ZZ 551 A 1 HETATM 18 C CG1 0ZZ . . . E 3 47.825 26.374 96.068 1 7.03 ? CG1 0ZZ 551 A 1 HETATM 19 C CG2 0ZZ . . . E 3 47.064 27.076 93.816 1 7.03 ? CG2 0ZZ 551 A 1 HETATM 20 N N1 0ZZ . . . E 3 50.432 25.882 92.66 1 7.35 ? N1 0ZZ 551 A 1 HETATM 21 C CA1 0ZZ . . . E 3 50.85 25.525 91.304 1 7.35 ? CA1 0ZZ 551 A 1 HETATM 22 C C9 0ZZ . . . E 3 49.862 24.512 90.677 1 7.35 ? C9 0ZZ 551 A 1 HETATM 23 O O3 0ZZ . . . E 3 50.412 24.059 89.426 1 7.35 ? O3 0ZZ 551 A 1 HETATM 24 C CB1 0ZZ . . . E 3 52.258 24.939 91.323 1 7.03 ? CB1 0ZZ 551 A 1 HETATM 25 C CG 0ZZ . . . E 3 53.319 26 91.288 1 7.03 ? CG 0ZZ 551 A 1 HETATM 26 O OD1 0ZZ . . . E 3 53.824 26.305 90.2 1 7.03 ? OD1 0ZZ 551 A 1 HETATM 27 O OD2 0ZZ . . . E 3 53.643 26.542 92.347 1 7.03 ? OD2 0ZZ 551 A 1 HETATM 28 C C11 0ZZ . . . E 3 48.548 25.253 90.375 1 15.01 ? C11 0ZZ 551 A 1 HETATM 29 S S2 0ZZ . . . E 3 47.227 24.15 89.879 1 15.01 ? S2 0ZZ 551 A 1 HETATM 30 C C31 0ZZ . . . E 3 47.86 23.52 88.346 1 15.01 ? C31 0ZZ 551 A 1 HETATM 31 C C41 0ZZ . . . E 3 46.768 23.142 87.386 1 15.01 ? C41 0ZZ 551 A 1 HETATM 32 C C51 0ZZ . . . E 3 47.081 22.575 86.154 1 15.01 ? C51 0ZZ 551 A 1 HETATM 33 C C61 0ZZ . . . E 3 46.076 22.182 85.264 1 15.01 ? C61 0ZZ 551 A 1 HETATM 34 C C71 0ZZ . . . E 3 44.741 22.364 85.614 1 15.01 ? C71 0ZZ 551 A 1 HETATM 35 C C81 0ZZ . . . E 3 44.422 22.932 86.837 1 15.01 ? C81 0ZZ 551 A 1 HETATM 36 C C91 0ZZ . . . E 3 45.425 23.32 87.716 1 15.01 ? C91 0ZZ 551 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #