data_1RHQ
#
_model_server_result.job_id            MM5ffFA1t5KXEFq6TIQXKg 
_model_server_result.datetime_utc      '2025-07-19 13:06:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rhq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":551}' 
#
_entry.id    1RHQ 
#
_exptl.entry_id    1RHQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     
;BOP covalently bound to the  
N-terminus, PTF covalently 
bound to the C-terminus The inhibitor was chemically synthesized.
;
_entity.formula_weight              581.519 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-S-benzyl-3-({N-[(5-bromo-2-methoxyphenyl)acetyl]-L-valyl}amino)-2,3-dideoxy-5-thio-D-erythro-pentonic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          128.06 
_cell.angle_gamma         90 
_cell.entry_id            1RHQ 
_cell.length_a            110.3 
_cell.length_b            96.9 
_cell.length_c            70.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RHQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 135 A CYS 285 1_555 E C9 0ZZ . A 0ZZ 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? 
covale ? covale2 C SG CYS 135 D CYS 285 1_555 F C9 0ZZ . D 0ZZ 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? 
#
_chem_comp.formula           'C26 H33 Br N2 O6 S' 
_chem_comp.formula_weight    581.519 
_chem_comp.id                0ZZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-S-benzyl-3-({N-[(5-bromo-2-methoxyphenyl)acetyl]-L-valyl}amino)-2,3-dideoxy-5-thio-D-erythro-pentonic acid' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 0ZZ doub 1 n y 
C2 O1 0ZZ sing 2 n n 
C2 C1 0ZZ sing 3 n y 
C3 C4 0ZZ sing 4 n y 
C3 H3 0ZZ sing 5 n n 
C4 C5 0ZZ doub 6 n y 
C4 H4 0ZZ sing 7 n n 
C5 C6 0ZZ sing 8 n y 
C5 BR1 0ZZ sing 9 n n 
C6 C1 0ZZ doub 10 n y 
C6 H6 0ZZ sing 11 n n 
O1 C7 0ZZ sing 12 n n 
C7 H71 0ZZ sing 13 n n 
C7 H72 0ZZ sing 14 n n 
C7 H73 0ZZ sing 15 n n 
C1 CH3 0ZZ sing 16 n n 
C O 0ZZ doub 17 n n 
C CH3 0ZZ sing 18 n n 
C N 0ZZ sing 19 n n 
CH3 H1 0ZZ sing 20 n n 
CH3 H2 0ZZ sing 21 n n 
N CA 0ZZ sing 22 n n 
N H 0ZZ sing 23 n n 
CA C8 0ZZ sing 24 n n 
CA CB 0ZZ sing 25 n n 
CA HA 0ZZ sing 26 n n 
C8 O2 0ZZ doub 27 n n 
C8 N1 0ZZ sing 28 n n 
CB CG1 0ZZ sing 29 n n 
CB CG2 0ZZ sing 30 n n 
CB HB 0ZZ sing 31 n n 
CG1 HG11 0ZZ sing 32 n n 
CG1 HG12 0ZZ sing 33 n n 
CG1 HG13 0ZZ sing 34 n n 
CG2 HG21 0ZZ sing 35 n n 
CG2 HG22 0ZZ sing 36 n n 
CG2 HG23 0ZZ sing 37 n n 
N1 CA1 0ZZ sing 38 n n 
N1 H5 0ZZ sing 39 n n 
CA1 C9 0ZZ sing 40 n n 
CA1 CB1 0ZZ sing 41 n n 
CA1 HA1 0ZZ sing 42 n n 
C9 O3 0ZZ sing 43 n n 
C9 C11 0ZZ sing 44 n n 
CB1 CG 0ZZ sing 45 n n 
CB1 HB2 0ZZ sing 46 n n 
CB1 HB3 0ZZ sing 47 n n 
CG OD1 0ZZ doub 48 n n 
CG OD2 0ZZ sing 49 n n 
OD2 HD2 0ZZ sing 50 n n 
C11 S2 0ZZ sing 51 n n 
C11 H11 0ZZ sing 52 n n 
C11 H12 0ZZ sing 53 n n 
S2 C31 0ZZ sing 54 n n 
C31 C41 0ZZ sing 55 n n 
C31 H31 0ZZ sing 56 n n 
C31 H32 0ZZ sing 57 n n 
C41 C51 0ZZ doub 58 n y 
C41 C91 0ZZ sing 59 n y 
C51 C61 0ZZ sing 60 n y 
C51 H51 0ZZ sing 61 n n 
C61 C71 0ZZ doub 62 n y 
C61 H61 0ZZ sing 63 n n 
C71 C81 0ZZ sing 64 n y 
C71 H7 0ZZ sing 65 n n 
C81 C91 0ZZ doub 66 n y 
C81 H8 0ZZ sing 67 n n 
C91 H9 0ZZ sing 68 n n 
C9 H80 0ZZ sing 69 n n 
O3 H81 0ZZ sing 70 n n 
#
_atom_sites.entry_id                     1RHQ 
_atom_sites.fract_transf_matrix[1][1]    0.009066 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007099 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017913 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 0ZZ A 1 551 551 0ZZ BOP . 
F 3 0ZZ D 1 551 551 0ZZ BOP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 0ZZ . . . F 3 58.022 -15.667 84.206 1 22.47 ? C2 0ZZ 551 D 1 
HETATM 2 C C3 0ZZ . . . F 3 59.127 -15.787 83.349 1 22.47 ? C3 0ZZ 551 D 1 
HETATM 3 C C4 0ZZ . . . F 3 60.414 -15.906 83.848 1 22.47 ? C4 0ZZ 551 D 1 
HETATM 4 C C5 0ZZ . . . F 3 60.654 -15.916 85.223 1 22.47 ? C5 0ZZ 551 D 1 
HETATM 5 C C6 0ZZ . . . F 3 59.553 -15.816 86.093 1 22.47 ? C6 0ZZ 551 D 1 
HETATM 6 O O1 0ZZ . . . F 3 56.712 -15.407 83.656 1 22.47 ? O1 0ZZ 551 D 1 
HETATM 7 C C7 0ZZ . . . F 3 55.629 -16.381 83.771 1 22.47 ? C7 0ZZ 551 D 1 
HETATM 8 BR BR1 0ZZ . . . F 3 62.456 -15.948 85.909 1 22.47 ? BR1 0ZZ 551 D 1 
HETATM 9 C C1 0ZZ . . . F 3 58.242 -15.694 85.597 1 22.47 ? C1 0ZZ 551 D 1 
HETATM 10 C C 0ZZ . . . F 3 56.785 -14.111 86.966 1 7.03 ? C 0ZZ 551 D 1 
HETATM 11 O O 0ZZ . . . F 3 57.513 -13.57 87.783 1 7.03 ? O 0ZZ 551 D 1 
HETATM 12 C CH3 0ZZ . . . F 3 57.062 -15.547 86.541 1 7.03 ? CH3 0ZZ 551 D 1 
HETATM 13 N N 0ZZ . . . F 3 55.733 -13.496 86.42 1 24.57 ? N 0ZZ 551 D 1 
HETATM 14 C CA 0ZZ . . . F 3 55.379 -12.104 86.728 1 24.57 ? CA 0ZZ 551 D 1 
HETATM 15 C C8 0ZZ . . . F 3 54.05 -11.902 87.479 1 24.57 ? C8 0ZZ 551 D 1 
HETATM 16 O O2 0ZZ . . . F 3 53.191 -12.792 87.509 1 24.57 ? O2 0ZZ 551 D 1 
HETATM 17 C CB 0ZZ . . . F 3 55.279 -11.275 85.438 1 7.03 ? CB 0ZZ 551 D 1 
HETATM 18 C CG1 0ZZ . . . F 3 56.612 -11.207 84.754 1 7.03 ? CG1 0ZZ 551 D 1 
HETATM 19 C CG2 0ZZ . . . F 3 54.241 -11.89 84.522 1 7.03 ? CG2 0ZZ 551 D 1 
HETATM 20 N N1 0ZZ . . . F 3 53.891 -10.716 88.072 1 7.35 ? N1 0ZZ 551 D 1 
HETATM 21 C CA1 0ZZ . . . F 3 52.669 -10.355 88.791 1 7.35 ? CA1 0ZZ 551 D 1 
HETATM 22 C C9 0ZZ . . . F 3 51.841 -9.331 87.978 1 7.35 ? C9 0ZZ 551 D 1 
HETATM 23 O O3 0ZZ . . . F 3 50.751 -8.875 88.802 1 7.35 ? O3 0ZZ 551 D 1 
HETATM 24 C CB1 0ZZ . . . F 3 53.013 -9.78 90.161 1 7.03 ? CB1 0ZZ 551 D 1 
HETATM 25 C CG 0ZZ . . . F 3 53.213 -10.849 91.195 1 7.03 ? CG 0ZZ 551 D 1 
HETATM 26 O OD1 0ZZ . . . F 3 52.266 -11.152 91.933 1 7.03 ? OD1 0ZZ 551 D 1 
HETATM 27 O OD2 0ZZ . . . F 3 54.314 -11.4 91.266 1 7.03 ? OD2 0ZZ 551 D 1 
HETATM 28 C C11 0ZZ . . . F 3 51.242 -10.06 86.763 1 15.01 ? C11 0ZZ 551 D 1 
HETATM 29 S S2 0ZZ . . . F 3 50.466 -8.944 85.597 1 15.01 ? S2 0ZZ 551 D 1 
HETATM 30 C C31 0ZZ . . . F 3 49.122 -8.31 86.567 1 15.01 ? C31 0ZZ 551 D 1 
HETATM 31 C C41 0ZZ . . . F 3 47.941 -7.918 85.725 1 15.01 ? C41 0ZZ 551 D 1 
HETATM 32 C C51 0ZZ . . . F 3 46.817 -7.347 86.314 1 15.01 ? C51 0ZZ 551 D 1 
HETATM 33 C C61 0ZZ . . . F 3 45.724 -6.941 85.541 1 15.01 ? C61 0ZZ 551 D 1 
HETATM 34 C C71 0ZZ . . . F 3 45.759 -7.114 84.16 1 15.01 ? C71 0ZZ 551 D 1 
HETATM 35 C C81 0ZZ . . . F 3 46.873 -7.687 83.567 1 15.01 ? C81 0ZZ 551 D 1 
HETATM 36 C C91 0ZZ . . . F 3 47.955 -8.087 84.341 1 15.01 ? C91 0ZZ 551 D 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#