data_1RHU # _model_server_result.job_id YpCWFWZr9Ac98oO-cjtRPQ _model_server_result.datetime_utc '2025-02-26 21:26:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rhu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1RHU # _exptl.entry_id 1RHU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 638.688 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S)-3-[({(2S)-5-[(N-ACETYL-L-ALPHA-ASPARTYL)AMINO]-4-OXO-1,2,4,5,6,7-HEXAHYDROAZEPINO[3,2,1-HI]INDOL-2-YL}CARBONYL)AMINO]-5-(BENZYLSULFANYL)-4-OXOPENTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RHU _cell.length_a 69.5 _cell.length_b 98 _cell.length_c 44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RHU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 139 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 135 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C9 _struct_conn.ptnr2_label_comp_id 3CY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 3CY _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.795 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C31 H34 N4 O9 S' _chem_comp.formula_weight 638.688 _chem_comp.id 3CY _chem_comp.mon_nstd_flag . _chem_comp.name '(3S)-3-[({(2S)-5-[(N-ACETYL-L-ALPHA-ASPARTYL)AMINO]-4-OXO-1,2,4,5,6,7-HEXAHYDROAZEPINO[3,2,1-HI]INDOL-2-YL}CARBONYL)AMINO]-5-(BENZYLSULFANYL)-4-OXOPENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 3CY doub 1 n y C1 C6 3CY sing 2 n y C1 H1 3CY sing 3 n n C2 C3 3CY sing 4 n y C2 H2 3CY sing 5 n n C3 C4 3CY doub 6 n y C3 H3 3CY sing 7 n n C4 C5 3CY sing 8 n y C4 H4 3CY sing 9 n n C5 C6 3CY doub 10 n y C5 H5 3CY sing 11 n n C6 C7 3CY sing 12 n n C7 S1 3CY sing 13 n n C7 H71 3CY sing 14 n n C7 H72 3CY sing 15 n n S1 C8 3CY sing 16 n n C8 C9 3CY sing 17 n n C8 H81 3CY sing 18 n n C8 H82 3CY sing 19 n n C9 C10 3CY sing 20 n n C9 O1 3CY doub 21 n n C10 N1 3CY sing 22 n n C10 C11 3CY sing 23 n n C10 H10 3CY sing 24 n n N1 C13 3CY sing 25 n n N1 HN1 3CY sing 26 n n C11 C12 3CY sing 27 n n C11 H111 3CY sing 28 n n C11 H112 3CY sing 29 n n C12 O2 3CY doub 30 n n C12 O3 3CY sing 31 n n O3 HO3 3CY sing 32 n n C13 O4 3CY doub 33 n n C13 C14 3CY sing 34 n n C21 N2 3CY sing 35 n n C21 C16 3CY doub 36 n y C21 C20 3CY sing 37 n y N2 C14 3CY sing 38 n n N2 C25 3CY sing 39 n n C14 C15 3CY sing 40 n n C14 H14 3CY sing 41 n n C15 C16 3CY sing 42 n n C15 H151 3CY sing 43 n n C15 H152 3CY sing 44 n n C16 C17 3CY sing 45 n y C17 C18 3CY doub 46 n y C17 H17 3CY sing 47 n n C18 C19 3CY sing 48 n y C18 H18 3CY sing 49 n n C19 C20 3CY doub 50 n y C19 H19 3CY sing 51 n n C20 C22 3CY sing 52 n n C22 C23 3CY sing 53 n n C22 H221 3CY sing 54 n n C22 H222 3CY sing 55 n n C23 C24 3CY sing 56 n n C23 H231 3CY sing 57 n n C23 H232 3CY sing 58 n n C24 C25 3CY sing 59 n n C24 N3 3CY sing 60 n n C24 H24 3CY sing 61 n n C25 O5 3CY doub 62 n n N3 C26 3CY sing 63 n n N3 HN3 3CY sing 64 n n C26 C27 3CY sing 65 n n C26 O6 3CY doub 66 n n C27 N4 3CY sing 67 n n C27 C28 3CY sing 68 n n C27 H27 3CY sing 69 n n N4 C30 3CY sing 70 n n N4 HN4 3CY sing 71 n n C30 C31 3CY sing 72 n n C30 O9 3CY doub 73 n n C31 H311 3CY sing 74 n n C31 H312 3CY sing 75 n n C31 H313 3CY sing 76 n n C28 C29 3CY sing 77 n n C28 H281 3CY sing 78 n n C28 H282 3CY sing 79 n n C29 O8 3CY sing 80 n n C29 O7 3CY doub 81 n n O8 HO8 3CY sing 82 n n # _atom_sites.entry_id 1RHU _atom_sites.fract_transf_matrix[1][1] 0.014388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3CY A 1 501 501 3CY 3CY . D 4 HOH A 1 1 1 HOH HOH . D 4 HOH A 2 2 2 HOH HOH . D 4 HOH A 3 7 7 HOH HOH . D 4 HOH A 4 8 8 HOH HOH . D 4 HOH A 5 9 9 HOH HOH . D 4 HOH A 6 11 11 HOH HOH . D 4 HOH A 7 12 12 HOH HOH . D 4 HOH A 8 14 14 HOH HOH . D 4 HOH A 9 16 16 HOH HOH . D 4 HOH A 10 17 17 HOH HOH . D 4 HOH A 11 18 18 HOH HOH . D 4 HOH A 12 20 20 HOH HOH . D 4 HOH A 13 21 21 HOH HOH . D 4 HOH A 14 22 22 HOH HOH . D 4 HOH A 15 24 24 HOH HOH . D 4 HOH A 16 26 26 HOH HOH . D 4 HOH A 17 28 28 HOH HOH . D 4 HOH A 18 29 29 HOH HOH . D 4 HOH A 19 30 30 HOH HOH . D 4 HOH A 20 31 31 HOH HOH . D 4 HOH A 21 32 32 HOH HOH . D 4 HOH A 22 34 34 HOH HOH . D 4 HOH A 23 36 36 HOH HOH . D 4 HOH A 24 37 37 HOH HOH . D 4 HOH A 25 38 38 HOH HOH . D 4 HOH A 26 40 40 HOH HOH . D 4 HOH A 27 41 41 HOH HOH . D 4 HOH A 28 42 42 HOH HOH . D 4 HOH A 29 45 45 HOH HOH . D 4 HOH A 30 46 46 HOH HOH . D 4 HOH A 31 47 47 HOH HOH . D 4 HOH A 32 48 48 HOH HOH . D 4 HOH A 33 50 50 HOH HOH . D 4 HOH A 34 51 51 HOH HOH . D 4 HOH A 35 55 55 HOH HOH . D 4 HOH A 36 56 56 HOH HOH . D 4 HOH A 37 59 59 HOH HOH . D 4 HOH A 38 60 60 HOH HOH . D 4 HOH A 39 61 61 HOH HOH . D 4 HOH A 40 62 62 HOH HOH . D 4 HOH A 41 63 63 HOH HOH . D 4 HOH A 42 65 65 HOH HOH . D 4 HOH A 43 66 66 HOH HOH . D 4 HOH A 44 67 67 HOH HOH . D 4 HOH A 45 68 68 HOH HOH . D 4 HOH A 46 73 73 HOH HOH . D 4 HOH A 47 74 74 HOH HOH . D 4 HOH A 48 75 75 HOH HOH . D 4 HOH A 49 77 77 HOH HOH . D 4 HOH A 50 78 78 HOH HOH . D 4 HOH A 51 79 79 HOH HOH . D 4 HOH A 52 83 83 HOH HOH . D 4 HOH A 53 87 87 HOH HOH . D 4 HOH A 54 88 88 HOH HOH . D 4 HOH A 55 90 90 HOH HOH . D 4 HOH A 56 91 91 HOH HOH . D 4 HOH A 57 93 93 HOH HOH . D 4 HOH A 58 94 94 HOH HOH . D 4 HOH A 59 98 98 HOH HOH . D 4 HOH A 60 99 99 HOH HOH . D 4 HOH A 61 100 100 HOH HOH . E 4 HOH B 1 3 3 HOH HOH . E 4 HOH B 2 4 4 HOH HOH . E 4 HOH B 3 5 5 HOH HOH . E 4 HOH B 4 6 6 HOH HOH . E 4 HOH B 5 10 10 HOH HOH . E 4 HOH B 6 13 13 HOH HOH . E 4 HOH B 7 15 15 HOH HOH . E 4 HOH B 8 19 19 HOH HOH . E 4 HOH B 9 23 23 HOH HOH . E 4 HOH B 10 25 25 HOH HOH . E 4 HOH B 11 27 27 HOH HOH . E 4 HOH B 12 33 33 HOH HOH . E 4 HOH B 13 35 35 HOH HOH . E 4 HOH B 14 43 43 HOH HOH . E 4 HOH B 15 44 44 HOH HOH . E 4 HOH B 16 49 49 HOH HOH . E 4 HOH B 17 52 52 HOH HOH . E 4 HOH B 18 53 53 HOH HOH . E 4 HOH B 19 54 54 HOH HOH . E 4 HOH B 20 57 57 HOH HOH . E 4 HOH B 21 58 58 HOH HOH . E 4 HOH B 22 64 64 HOH HOH . E 4 HOH B 23 69 69 HOH HOH . E 4 HOH B 24 70 70 HOH HOH . E 4 HOH B 25 71 71 HOH HOH . E 4 HOH B 26 72 72 HOH HOH . E 4 HOH B 27 76 76 HOH HOH . E 4 HOH B 28 80 80 HOH HOH . E 4 HOH B 29 81 81 HOH HOH . E 4 HOH B 30 82 82 HOH HOH . E 4 HOH B 31 84 84 HOH HOH . E 4 HOH B 32 85 85 HOH HOH . E 4 HOH B 33 86 86 HOH HOH . E 4 HOH B 34 89 89 HOH HOH . E 4 HOH B 35 92 92 HOH HOH . E 4 HOH B 36 95 95 HOH HOH . E 4 HOH B 37 96 96 HOH HOH . E 4 HOH B 38 97 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3CY . . . C 3 73.744 -15.472 90.453 1 52.34 ? C1 3CY 501 A 1 HETATM 2 C C2 3CY . . . C 3 73.365 -14.738 89.295 1 53.14 ? C2 3CY 501 A 1 HETATM 3 C C3 3CY . . . C 3 72.027 -14.277 89.153 1 53.47 ? C3 3CY 501 A 1 HETATM 4 C C4 3CY . . . C 3 71.067 -14.554 90.161 1 52.22 ? C4 3CY 501 A 1 HETATM 5 C C5 3CY . . . C 3 71.452 -15.285 91.311 1 50.99 ? C5 3CY 501 A 1 HETATM 6 C C6 3CY . . . C 3 72.796 -15.756 91.475 1 50.57 ? C6 3CY 501 A 1 HETATM 7 C C7 3CY . . . C 3 73.17 -16.548 92.727 1 46.46 ? C7 3CY 501 A 1 HETATM 8 S S1 3CY . . . C 3 72.207 -16.031 94.156 1 38.96 ? S1 3CY 501 A 1 HETATM 9 C C8 3CY . . . C 3 72.744 -17.196 95.422 1 36.88 ? C8 3CY 501 A 1 HETATM 10 C C9 3CY . . . C 3 71.99 -16.98 96.754 1 35.34 ? C9 3CY 501 A 1 HETATM 11 C C10 3CY . . . C 3 72.374 -18.013 97.845 1 33.51 ? C10 3CY 501 A 1 HETATM 12 O O1 3CY . . . C 3 70.748 -17.05 96.44 1 34.22 ? O1 3CY 501 A 1 HETATM 13 N N1 3CY . . . C 3 73.783 -18.142 98.093 1 33.59 ? N1 3CY 501 A 1 HETATM 14 C C11 3CY . . . C 3 71.672 -17.707 99.213 1 32.46 ? C11 3CY 501 A 1 HETATM 15 C C12 3CY . . . C 3 70.641 -18.741 99.663 1 32.98 ? C12 3CY 501 A 1 HETATM 16 O O2 3CY . . . C 3 70.255 -18.753 100.812 1 34.29 ? O2 3CY 501 A 1 HETATM 17 O O3 3CY . . . C 3 70.209 -19.543 98.881 1 34.01 ? O3 3CY 501 A 1 HETATM 18 C C13 3CY . . . C 3 74.353 -19.307 97.824 1 32.21 ? C13 3CY 501 A 1 HETATM 19 O O4 3CY . . . C 3 73.75 -20.315 97.349 1 32.14 ? O4 3CY 501 A 1 HETATM 20 C C21 3CY . . . C 3 76.8 -21.077 96.944 1 33.18 ? C21 3CY 501 A 1 HETATM 21 N N2 3CY . . . C 3 76.25 -20.824 98.176 1 33.53 ? N2 3CY 501 A 1 HETATM 22 C C14 3CY . . . C 3 75.842 -19.409 98.17 1 32.12 ? C14 3CY 501 A 1 HETATM 23 C C15 3CY . . . C 3 76.872 -18.742 97.167 1 32.36 ? C15 3CY 501 A 1 HETATM 24 C C16 3CY . . . C 3 77.193 -19.92 96.325 1 33.31 ? C16 3CY 501 A 1 HETATM 25 C C17 3CY . . . C 3 77.808 -19.954 95.056 1 34.13 ? C17 3CY 501 A 1 HETATM 26 C C18 3CY . . . C 3 78 -21.207 94.423 1 35.19 ? C18 3CY 501 A 1 HETATM 27 C C19 3CY . . . C 3 77.574 -22.413 95.056 1 34.27 ? C19 3CY 501 A 1 HETATM 28 C C20 3CY . . . C 3 76.954 -22.379 96.34 1 33.36 ? C20 3CY 501 A 1 HETATM 29 C C22 3CY . . . C 3 76.43 -23.643 97.053 1 32.48 ? C22 3CY 501 A 1 HETATM 30 C C23 3CY . . . C 3 76.662 -23.933 98.553 1 32.74 ? C23 3CY 501 A 1 HETATM 31 C C24 3CY . . . C 3 77.236 -22.79 99.368 1 34.26 ? C24 3CY 501 A 1 HETATM 32 C C25 3CY . . . C 3 76.349 -21.531 99.355 1 33.3 ? C25 3CY 501 A 1 HETATM 33 O O5 3CY . . . C 3 75.782 -21.193 100.433 1 33.42 ? O5 3CY 501 A 1 HETATM 34 N N3 3CY . . . C 3 77.438 -23.166 100.77 1 35.56 ? N3 3CY 501 A 1 HETATM 35 C C26 3CY . . . C 3 78.535 -23.826 101.154 1 38.02 ? C26 3CY 501 A 1 HETATM 36 C C27 3CY . . . C 3 78.619 -24.106 102.662 1 38.54 ? C27 3CY 501 A 1 HETATM 37 O O6 3CY . . . C 3 79.484 -24.197 100.392 1 40.16 ? O6 3CY 501 A 1 HETATM 38 N N4 3CY . . . C 3 79.048 -25.5 102.889 1 40.34 ? N4 3CY 501 A 1 HETATM 39 C C30 3CY . . . C 3 78.169 -26.537 102.922 1 42.82 ? C30 3CY 501 A 1 HETATM 40 C C31 3CY . . . C 3 78.84 -27.894 103.173 1 43.2 ? C31 3CY 501 A 1 HETATM 41 O O9 3CY . . . C 3 76.906 -26.438 102.766 1 43.23 ? O9 3CY 501 A 1 HETATM 42 C C28 3CY . . . C 3 79.616 -23.097 103.283 1 37.96 ? C28 3CY 501 A 1 HETATM 43 C C29 3CY . . . C 3 79.812 -23.242 104.786 1 38.15 ? C29 3CY 501 A 1 HETATM 44 O O8 3CY . . . C 3 80.934 -23.308 105.241 1 36.98 ? O8 3CY 501 A 1 HETATM 45 O O7 3CY . . . C 3 78.849 -23.28 105.526 1 39.27 ? O7 3CY 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #