data_1RI4 # _model_server_result.job_id nLE0yuyMssaVP5mftMBAMg _model_server_result.datetime_utc '2025-03-09 05:15:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ri4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 1RI4 # _exptl.entry_id 1RI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RI4 _cell.length_a 63.803 _cell.length_b 63.803 _cell.length_c 112.683 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 1RI4 _atom_sites.fract_transf_matrix[1][1] 0.015673 _atom_sites.fract_transf_matrix[1][2] 0.009049 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 299 1 SAM SAM . C 3 HOH A 1 300 1 HOH WAT . C 3 HOH A 2 301 2 HOH WAT . C 3 HOH A 3 302 3 HOH WAT . C 3 HOH A 4 303 4 HOH WAT . C 3 HOH A 5 304 5 HOH WAT . C 3 HOH A 6 305 6 HOH WAT . C 3 HOH A 7 306 7 HOH WAT . C 3 HOH A 8 307 8 HOH WAT . C 3 HOH A 9 308 9 HOH WAT . C 3 HOH A 10 309 10 HOH WAT . C 3 HOH A 11 310 11 HOH WAT . C 3 HOH A 12 311 12 HOH WAT . C 3 HOH A 13 312 13 HOH WAT . C 3 HOH A 14 313 14 HOH WAT . C 3 HOH A 15 314 15 HOH WAT . C 3 HOH A 16 315 16 HOH WAT . C 3 HOH A 17 316 17 HOH WAT . C 3 HOH A 18 317 18 HOH WAT . C 3 HOH A 19 318 19 HOH WAT . C 3 HOH A 20 319 20 HOH WAT . C 3 HOH A 21 320 21 HOH WAT . C 3 HOH A 22 321 22 HOH WAT . C 3 HOH A 23 322 23 HOH WAT . C 3 HOH A 24 323 24 HOH WAT . C 3 HOH A 25 324 25 HOH WAT . C 3 HOH A 26 325 26 HOH WAT . C 3 HOH A 27 326 27 HOH WAT . C 3 HOH A 28 327 28 HOH WAT . C 3 HOH A 29 328 29 HOH WAT . C 3 HOH A 30 329 30 HOH WAT . C 3 HOH A 31 330 31 HOH WAT . C 3 HOH A 32 331 32 HOH WAT . C 3 HOH A 33 332 33 HOH WAT . C 3 HOH A 34 333 34 HOH WAT . C 3 HOH A 35 334 35 HOH WAT . C 3 HOH A 36 335 36 HOH WAT . C 3 HOH A 37 336 37 HOH WAT . C 3 HOH A 38 337 38 HOH WAT . C 3 HOH A 39 338 39 HOH WAT . C 3 HOH A 40 339 40 HOH WAT . C 3 HOH A 41 340 41 HOH WAT . C 3 HOH A 42 341 42 HOH WAT . C 3 HOH A 43 342 43 HOH WAT . C 3 HOH A 44 343 44 HOH WAT . C 3 HOH A 45 344 45 HOH WAT . C 3 HOH A 46 345 46 HOH WAT . C 3 HOH A 47 346 47 HOH WAT . C 3 HOH A 48 347 48 HOH WAT . C 3 HOH A 49 348 49 HOH WAT . C 3 HOH A 50 349 50 HOH WAT . C 3 HOH A 51 350 51 HOH WAT . C 3 HOH A 52 351 52 HOH WAT . C 3 HOH A 53 352 53 HOH WAT . C 3 HOH A 54 353 54 HOH WAT . C 3 HOH A 55 354 55 HOH WAT . C 3 HOH A 56 355 56 HOH WAT . C 3 HOH A 57 356 57 HOH WAT . C 3 HOH A 58 357 58 HOH WAT . C 3 HOH A 59 358 59 HOH WAT . C 3 HOH A 60 359 60 HOH WAT . C 3 HOH A 61 360 61 HOH WAT . C 3 HOH A 62 361 62 HOH WAT . C 3 HOH A 63 362 63 HOH WAT . C 3 HOH A 64 363 64 HOH WAT . C 3 HOH A 65 364 65 HOH WAT . C 3 HOH A 66 365 66 HOH WAT . C 3 HOH A 67 366 67 HOH WAT . C 3 HOH A 68 367 68 HOH WAT . C 3 HOH A 69 368 69 HOH WAT . C 3 HOH A 70 369 70 HOH WAT . C 3 HOH A 71 370 71 HOH WAT . C 3 HOH A 72 371 72 HOH WAT . C 3 HOH A 73 372 73 HOH WAT . C 3 HOH A 74 373 74 HOH WAT . C 3 HOH A 75 374 75 HOH WAT . C 3 HOH A 76 375 76 HOH WAT . C 3 HOH A 77 376 77 HOH WAT . C 3 HOH A 78 377 78 HOH WAT . C 3 HOH A 79 378 79 HOH WAT . C 3 HOH A 80 379 80 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 13.445 30.523 92.184 1 40.82 ? N SAM 299 A 1 HETATM 2 C CA SAM . . . B 2 14.098 31.504 93.102 1 42.03 ? CA SAM 299 A 1 HETATM 3 C C SAM . . . B 2 13.352 32.813 93.041 1 42.17 ? C SAM 299 A 1 HETATM 4 O O SAM . . . B 2 12.386 32.929 92.262 1 42.98 ? O SAM 299 A 1 HETATM 5 O OXT SAM . . . B 2 13.818 33.73 93.817 1 43.38 ? OXT SAM 299 A 1 HETATM 6 C CB SAM . . . B 2 15.576 31.823 92.67 1 41.78 ? CB SAM 299 A 1 HETATM 7 C CG SAM . . . B 2 16.082 30.995 91.496 1 41.61 ? CG SAM 299 A 1 HETATM 8 S SD SAM . . . B 2 17.756 31.286 90.818 1 41.18 ? SD SAM 299 A 1 HETATM 9 C CE SAM . . . B 2 17.58 32.862 89.945 1 43.17 ? CE SAM 299 A 1 HETATM 10 C C5' SAM . . . B 2 17.896 30.061 89.557 1 39.55 ? C5' SAM 299 A 1 HETATM 11 C C4' SAM . . . B 2 18.062 28.662 90.169 1 38.19 ? C4' SAM 299 A 1 HETATM 12 O O4' SAM . . . B 2 18.064 27.711 89.086 1 38.53 ? O4' SAM 299 A 1 HETATM 13 C C3' SAM . . . B 2 19.436 28.404 90.859 1 38.59 ? C3' SAM 299 A 1 HETATM 14 O O3' SAM . . . B 2 19.11 28.264 92.305 1 35.69 ? O3' SAM 299 A 1 HETATM 15 C C2' SAM . . . B 2 19.906 27.012 90.397 1 38.84 ? C2' SAM 299 A 1 HETATM 16 O O2' SAM . . . B 2 20.473 26.012 91.238 1 40.04 ? O2' SAM 299 A 1 HETATM 17 C C1' SAM . . . B 2 18.668 26.559 89.572 1 39.06 ? C1' SAM 299 A 1 HETATM 18 N N9 SAM . . . B 2 19.032 25.631 88.503 1 39.14 ? N9 SAM 299 A 1 HETATM 19 C C8 SAM . . . B 2 19.903 25.804 87.43 1 39.26 ? C8 SAM 299 A 1 HETATM 20 N N7 SAM . . . B 2 20.008 24.74 86.66 1 39.91 ? N7 SAM 299 A 1 HETATM 21 C C5 SAM . . . B 2 19.15 23.812 87.253 1 39.37 ? C5 SAM 299 A 1 HETATM 22 C C6 SAM . . . B 2 18.82 22.45 86.932 1 39.61 ? C6 SAM 299 A 1 HETATM 23 N N6 SAM . . . B 2 19.361 21.807 85.865 1 39.29 ? N6 SAM 299 A 1 HETATM 24 N N1 SAM . . . B 2 17.905 21.772 87.738 1 39.8 ? N1 SAM 299 A 1 HETATM 25 C C2 SAM . . . B 2 17.381 22.435 88.812 1 39.19 ? C2 SAM 299 A 1 HETATM 26 N N3 SAM . . . B 2 17.634 23.709 89.205 1 38.73 ? N3 SAM 299 A 1 HETATM 27 C C4 SAM . . . B 2 18.541 24.344 88.386 1 39.13 ? C4 SAM 299 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #