data_1RI8
#
_model_server_result.job_id            WBfkDYSnZ9_6YG15ehwagQ 
_model_server_result.datetime_utc      '2024-11-25 14:34:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ri8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1758}' 
#
_entry.id    1RI8 
#
_exptl.entry_id    1RI8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RI8 
_cell.length_a            51.496 
_cell.length_b            53.43 
_cell.length_c            104.454 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RI8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 33 A CYS 33 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 6 B CYS 6 1_555 B SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 B SG CYS 30 B CYS 30 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 B SG CYS 64 B CYS 64 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 B SG CYS 76 B CYS 76 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1RI8 
_atom_sites.fract_transf_matrix[1][1]    0.019419 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018716 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009574 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL B 1 1758 1758 GOL GOL . 
D 4 HOH A 1 135 2 HOH TIP . 
D 4 HOH A 2 136 3 HOH TIP . 
D 4 HOH A 3 137 4 HOH TIP . 
D 4 HOH A 4 138 6 HOH TIP . 
D 4 HOH A 5 139 10 HOH TIP . 
D 4 HOH A 6 140 11 HOH TIP . 
D 4 HOH A 7 141 12 HOH TIP . 
D 4 HOH A 8 142 15 HOH TIP . 
D 4 HOH A 9 143 16 HOH TIP . 
D 4 HOH A 10 144 18 HOH TIP . 
D 4 HOH A 11 145 19 HOH TIP . 
D 4 HOH A 12 146 21 HOH TIP . 
D 4 HOH A 13 147 22 HOH TIP . 
D 4 HOH A 14 148 24 HOH TIP . 
D 4 HOH A 15 149 28 HOH TIP . 
D 4 HOH A 16 150 33 HOH TIP . 
D 4 HOH A 17 151 35 HOH TIP . 
D 4 HOH A 18 152 39 HOH TIP . 
D 4 HOH A 19 153 43 HOH TIP . 
D 4 HOH A 20 154 45 HOH TIP . 
D 4 HOH A 21 155 46 HOH TIP . 
D 4 HOH A 22 156 49 HOH TIP . 
D 4 HOH A 23 157 51 HOH TIP . 
D 4 HOH A 24 158 53 HOH TIP . 
D 4 HOH A 25 159 55 HOH TIP . 
D 4 HOH A 26 160 57 HOH TIP . 
D 4 HOH A 27 161 58 HOH TIP . 
D 4 HOH A 28 162 59 HOH TIP . 
D 4 HOH A 29 163 62 HOH TIP . 
D 4 HOH A 30 164 64 HOH TIP . 
D 4 HOH A 31 165 70 HOH TIP . 
D 4 HOH A 32 166 73 HOH TIP . 
D 4 HOH A 33 167 74 HOH TIP . 
D 4 HOH A 34 168 79 HOH TIP . 
D 4 HOH A 35 169 80 HOH TIP . 
D 4 HOH A 36 170 83 HOH TIP . 
D 4 HOH A 37 171 84 HOH TIP . 
D 4 HOH A 38 172 86 HOH TIP . 
D 4 HOH A 39 173 87 HOH TIP . 
D 4 HOH A 40 174 88 HOH TIP . 
D 4 HOH A 41 175 93 HOH TIP . 
D 4 HOH A 42 176 95 HOH TIP . 
D 4 HOH A 43 177 99 HOH TIP . 
D 4 HOH A 44 178 101 HOH TIP . 
D 4 HOH A 45 179 102 HOH TIP . 
D 4 HOH A 46 180 103 HOH TIP . 
D 4 HOH A 47 181 105 HOH TIP . 
D 4 HOH A 48 182 108 HOH TIP . 
D 4 HOH A 49 183 109 HOH TIP . 
D 4 HOH A 50 184 111 HOH TIP . 
D 4 HOH A 51 185 112 HOH TIP . 
D 4 HOH A 52 186 114 HOH TIP . 
D 4 HOH A 53 187 118 HOH TIP . 
D 4 HOH A 54 188 119 HOH TIP . 
D 4 HOH A 55 189 120 HOH TIP . 
D 4 HOH A 56 190 122 HOH TIP . 
D 4 HOH A 57 191 124 HOH TIP . 
D 4 HOH A 58 192 125 HOH TIP . 
D 4 HOH A 59 193 127 HOH TIP . 
D 4 HOH A 60 194 131 HOH TIP . 
D 4 HOH A 61 195 136 HOH TIP . 
D 4 HOH A 62 196 137 HOH TIP . 
D 4 HOH A 63 197 139 HOH TIP . 
D 4 HOH A 64 198 140 HOH TIP . 
D 4 HOH A 65 199 141 HOH TIP . 
D 4 HOH A 66 200 142 HOH TIP . 
D 4 HOH A 67 201 146 HOH TIP . 
D 4 HOH A 68 202 147 HOH TIP . 
D 4 HOH A 69 203 148 HOH TIP . 
D 4 HOH A 70 204 149 HOH TIP . 
D 4 HOH A 71 205 152 HOH TIP . 
D 4 HOH A 72 206 154 HOH TIP . 
D 4 HOH A 73 207 157 HOH TIP . 
D 4 HOH A 74 208 158 HOH TIP . 
D 4 HOH A 75 209 162 HOH TIP . 
D 4 HOH A 76 210 163 HOH TIP . 
D 4 HOH A 77 211 165 HOH TIP . 
D 4 HOH A 78 212 166 HOH TIP . 
D 4 HOH A 79 213 167 HOH TIP . 
D 4 HOH A 80 214 168 HOH TIP . 
D 4 HOH A 81 215 169 HOH TIP . 
D 4 HOH A 82 216 170 HOH TIP . 
D 4 HOH A 83 217 172 HOH TIP . 
D 4 HOH A 84 218 173 HOH TIP . 
D 4 HOH A 85 219 181 HOH TIP . 
D 4 HOH A 86 220 183 HOH TIP . 
D 4 HOH A 87 221 184 HOH TIP . 
D 4 HOH A 88 222 186 HOH TIP . 
D 4 HOH A 89 223 188 HOH TIP . 
D 4 HOH A 90 224 189 HOH TIP . 
D 4 HOH A 91 225 191 HOH TIP . 
D 4 HOH A 92 226 193 HOH TIP . 
D 4 HOH A 93 227 197 HOH TIP . 
D 4 HOH A 94 228 198 HOH TIP . 
D 4 HOH A 95 229 201 HOH TIP . 
D 4 HOH A 96 230 202 HOH TIP . 
D 4 HOH A 97 231 203 HOH TIP . 
D 4 HOH A 98 232 205 HOH TIP . 
D 4 HOH A 99 233 207 HOH TIP . 
D 4 HOH A 100 234 209 HOH TIP . 
D 4 HOH A 101 235 210 HOH TIP . 
D 4 HOH A 102 236 216 HOH TIP . 
D 4 HOH A 103 237 218 HOH TIP . 
D 4 HOH A 104 238 220 HOH TIP . 
D 4 HOH A 105 239 224 HOH TIP . 
D 4 HOH A 106 240 226 HOH TIP . 
D 4 HOH A 107 241 227 HOH TIP . 
D 4 HOH A 108 242 228 HOH TIP . 
D 4 HOH A 109 243 229 HOH TIP . 
D 4 HOH A 110 244 230 HOH TIP . 
E 4 HOH B 1 1759 1 HOH TIP . 
E 4 HOH B 2 1760 5 HOH TIP . 
E 4 HOH B 3 1761 7 HOH TIP . 
E 4 HOH B 4 1762 8 HOH TIP . 
E 4 HOH B 5 1763 9 HOH TIP . 
E 4 HOH B 6 1764 13 HOH TIP . 
E 4 HOH B 7 1765 14 HOH TIP . 
E 4 HOH B 8 1766 17 HOH TIP . 
E 4 HOH B 9 1767 20 HOH TIP . 
E 4 HOH B 10 1768 23 HOH TIP . 
E 4 HOH B 11 1769 25 HOH TIP . 
E 4 HOH B 12 1770 26 HOH TIP . 
E 4 HOH B 13 1771 27 HOH TIP . 
E 4 HOH B 14 1772 29 HOH TIP . 
E 4 HOH B 15 1773 30 HOH TIP . 
E 4 HOH B 16 1774 31 HOH TIP . 
E 4 HOH B 17 1775 32 HOH TIP . 
E 4 HOH B 18 1776 34 HOH TIP . 
E 4 HOH B 19 1777 36 HOH TIP . 
E 4 HOH B 20 1778 37 HOH TIP . 
E 4 HOH B 21 1779 38 HOH TIP . 
E 4 HOH B 22 1780 40 HOH TIP . 
E 4 HOH B 23 1781 41 HOH TIP . 
E 4 HOH B 24 1782 42 HOH TIP . 
E 4 HOH B 25 1783 44 HOH TIP . 
E 4 HOH B 26 1784 47 HOH TIP . 
E 4 HOH B 27 1785 48 HOH TIP . 
E 4 HOH B 28 1786 50 HOH TIP . 
E 4 HOH B 29 1787 52 HOH TIP . 
E 4 HOH B 30 1788 54 HOH TIP . 
E 4 HOH B 31 1789 56 HOH TIP . 
E 4 HOH B 32 1790 60 HOH TIP . 
E 4 HOH B 33 1791 61 HOH TIP . 
E 4 HOH B 34 1792 63 HOH TIP . 
E 4 HOH B 35 1793 65 HOH TIP . 
E 4 HOH B 36 1794 66 HOH TIP . 
E 4 HOH B 37 1795 67 HOH TIP . 
E 4 HOH B 38 1796 68 HOH TIP . 
E 4 HOH B 39 1797 69 HOH TIP . 
E 4 HOH B 40 1798 71 HOH TIP . 
E 4 HOH B 41 1799 72 HOH TIP . 
E 4 HOH B 42 1800 75 HOH TIP . 
E 4 HOH B 43 1801 76 HOH TIP . 
E 4 HOH B 44 1802 77 HOH TIP . 
E 4 HOH B 45 1803 78 HOH TIP . 
E 4 HOH B 46 1804 81 HOH TIP . 
E 4 HOH B 47 1805 82 HOH TIP . 
E 4 HOH B 48 1806 85 HOH TIP . 
E 4 HOH B 49 1807 89 HOH TIP . 
E 4 HOH B 50 1808 90 HOH TIP . 
E 4 HOH B 51 1809 91 HOH TIP . 
E 4 HOH B 52 1810 92 HOH TIP . 
E 4 HOH B 53 1811 94 HOH TIP . 
E 4 HOH B 54 1812 96 HOH TIP . 
E 4 HOH B 55 1813 97 HOH TIP . 
E 4 HOH B 56 1814 98 HOH TIP . 
E 4 HOH B 57 1815 100 HOH TIP . 
E 4 HOH B 58 1816 104 HOH TIP . 
E 4 HOH B 59 1817 106 HOH TIP . 
E 4 HOH B 60 1818 107 HOH TIP . 
E 4 HOH B 61 1819 110 HOH TIP . 
E 4 HOH B 62 1820 113 HOH TIP . 
E 4 HOH B 63 1821 115 HOH TIP . 
E 4 HOH B 64 1822 116 HOH TIP . 
E 4 HOH B 65 1823 117 HOH TIP . 
E 4 HOH B 66 1824 121 HOH TIP . 
E 4 HOH B 67 1825 123 HOH TIP . 
E 4 HOH B 68 1826 126 HOH TIP . 
E 4 HOH B 69 1827 128 HOH TIP . 
E 4 HOH B 70 1828 129 HOH TIP . 
E 4 HOH B 71 1829 130 HOH TIP . 
E 4 HOH B 72 1830 132 HOH TIP . 
E 4 HOH B 73 1831 133 HOH TIP . 
E 4 HOH B 74 1832 134 HOH TIP . 
E 4 HOH B 75 1833 135 HOH TIP . 
E 4 HOH B 76 1834 138 HOH TIP . 
E 4 HOH B 77 1835 143 HOH TIP . 
E 4 HOH B 78 1836 144 HOH TIP . 
E 4 HOH B 79 1837 145 HOH TIP . 
E 4 HOH B 80 1838 150 HOH TIP . 
E 4 HOH B 81 1839 151 HOH TIP . 
E 4 HOH B 82 1840 153 HOH TIP . 
E 4 HOH B 83 1841 155 HOH TIP . 
E 4 HOH B 84 1842 156 HOH TIP . 
E 4 HOH B 85 1843 159 HOH TIP . 
E 4 HOH B 86 1844 160 HOH TIP . 
E 4 HOH B 87 1845 161 HOH TIP . 
E 4 HOH B 88 1846 164 HOH TIP . 
E 4 HOH B 89 1847 171 HOH TIP . 
E 4 HOH B 90 1848 174 HOH TIP . 
E 4 HOH B 91 1849 175 HOH TIP . 
E 4 HOH B 92 1850 176 HOH TIP . 
E 4 HOH B 93 1851 177 HOH TIP . 
E 4 HOH B 94 1852 178 HOH TIP . 
E 4 HOH B 95 1853 179 HOH TIP . 
E 4 HOH B 96 1854 180 HOH TIP . 
E 4 HOH B 97 1855 182 HOH TIP . 
E 4 HOH B 98 1856 185 HOH TIP . 
E 4 HOH B 99 1857 187 HOH TIP . 
E 4 HOH B 100 1858 190 HOH TIP . 
E 4 HOH B 101 1859 192 HOH TIP . 
E 4 HOH B 102 1860 194 HOH TIP . 
E 4 HOH B 103 1861 195 HOH TIP . 
E 4 HOH B 104 1862 196 HOH TIP . 
E 4 HOH B 105 1863 199 HOH TIP . 
E 4 HOH B 106 1864 200 HOH TIP . 
E 4 HOH B 107 1865 204 HOH TIP . 
E 4 HOH B 108 1866 206 HOH TIP . 
E 4 HOH B 109 1867 208 HOH TIP . 
E 4 HOH B 110 1868 211 HOH TIP . 
E 4 HOH B 111 1869 212 HOH TIP . 
E 4 HOH B 112 1870 213 HOH TIP . 
E 4 HOH B 113 1871 214 HOH TIP . 
E 4 HOH B 114 1872 215 HOH TIP . 
E 4 HOH B 115 1873 217 HOH TIP . 
E 4 HOH B 116 1874 219 HOH TIP . 
E 4 HOH B 117 1875 221 HOH TIP . 
E 4 HOH B 118 1876 222 HOH TIP . 
E 4 HOH B 119 1877 223 HOH TIP . 
E 4 HOH B 120 1878 225 HOH TIP . 
E 4 HOH B 121 1879 231 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 27.319 15.892 7.333 1 20.22 ? C1 GOL 1758 B 1 
HETATM 2 O O1 GOL . . . C 3 28.338 16.059 8.198 1 18.68 ? O1 GOL 1758 B 1 
HETATM 3 C C2 GOL . . . C 3 27.099 14.285 6.607 1 26.14 ? C2 GOL 1758 B 1 
HETATM 4 O O2 GOL . . . C 3 25.423 14.517 6.356 1 29.16 ? O2 GOL 1758 B 1 
HETATM 5 C C3 GOL . . . C 3 27.436 13.285 7.475 1 20.05 ? C3 GOL 1758 B 1 
HETATM 6 O O3 GOL . . . C 3 27.052 12.36 8.109 1 25.48 ? O3 GOL 1758 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#