data_1RIF # _model_server_result.job_id fpG4cWN4gR3zcZLxa1DKcw _model_server_result.datetime_utc '2025-02-05 07:42:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":285}' # _entry.id 1RIF # _exptl.entry_id 1RIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.967 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GOLD ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.4 _cell.angle_gamma 90 _cell.entry_id 1RIF _cell.length_a 42.739 _cell.length_b 95.181 _cell.length_c 86.278 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 GLN 67 A GLN 67 1_555 C MG MG . A MG 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc2 C MG MG . A MG 286 1_555 J O HOH . A HOH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc3 C MG MG . A MG 286 1_555 J O HOH . A HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc4 C MG MG . A MG 286 1_555 J O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc5 B NE2 GLN 67 B GLN 67 1_555 G MG MG . B MG 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc6 G MG MG . B MG 288 1_555 K O HOH . B HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc7 G MG MG . B MG 288 1_555 K O HOH . B HOH 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? # _chem_comp.formula 'Au 1' _chem_comp.formula_weight 196.967 _chem_comp.id AU _chem_comp.mon_nstd_flag . _chem_comp.name 'GOLD ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RIF _atom_sites.fract_transf_matrix[1][1] 0.023398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002212 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 286 286 MG MG . D 3 AU A 1 287 282 AU AU . E 3 AU A 1 285 285 AU AU . F 2 MG B 1 287 287 MG MG . G 2 MG B 1 288 288 MG MG . H 3 AU B 1 283 283 AU AU . I 3 AU B 1 284 284 AU AU . J 4 HOH A 1 288 1 HOH HOH . J 4 HOH A 2 289 4 HOH HOH . J 4 HOH A 3 290 7 HOH HOH . J 4 HOH A 4 291 8 HOH HOH . J 4 HOH A 5 292 9 HOH HOH . J 4 HOH A 6 293 10 HOH HOH . J 4 HOH A 7 294 14 HOH HOH . J 4 HOH A 8 295 15 HOH HOH . J 4 HOH A 9 296 16 HOH HOH . J 4 HOH A 10 297 20 HOH HOH . J 4 HOH A 11 298 21 HOH HOH . J 4 HOH A 12 299 23 HOH HOH . J 4 HOH A 13 300 24 HOH HOH . J 4 HOH A 14 301 25 HOH HOH . J 4 HOH A 15 302 26 HOH HOH . J 4 HOH A 16 303 29 HOH HOH . J 4 HOH A 17 304 31 HOH HOH . J 4 HOH A 18 305 32 HOH HOH . J 4 HOH A 19 306 33 HOH HOH . J 4 HOH A 20 307 36 HOH HOH . J 4 HOH A 21 308 37 HOH HOH . J 4 HOH A 22 309 39 HOH HOH . J 4 HOH A 23 310 41 HOH HOH . J 4 HOH A 24 311 42 HOH HOH . J 4 HOH A 25 312 43 HOH HOH . J 4 HOH A 26 313 49 HOH HOH . J 4 HOH A 27 314 50 HOH HOH . J 4 HOH A 28 315 51 HOH HOH . J 4 HOH A 29 316 52 HOH HOH . J 4 HOH A 30 317 57 HOH HOH . J 4 HOH A 31 318 59 HOH HOH . J 4 HOH A 32 319 60 HOH HOH . J 4 HOH A 33 320 63 HOH HOH . J 4 HOH A 34 321 64 HOH HOH . J 4 HOH A 35 322 65 HOH HOH . J 4 HOH A 36 323 66 HOH HOH . J 4 HOH A 37 324 70 HOH HOH . J 4 HOH A 38 325 71 HOH HOH . J 4 HOH A 39 326 72 HOH HOH . J 4 HOH A 40 327 74 HOH HOH . J 4 HOH A 41 328 77 HOH HOH . J 4 HOH A 42 329 78 HOH HOH . J 4 HOH A 43 330 80 HOH HOH . J 4 HOH A 44 331 81 HOH HOH . J 4 HOH A 45 332 82 HOH HOH . J 4 HOH A 46 333 83 HOH HOH . J 4 HOH A 47 334 85 HOH HOH . J 4 HOH A 48 335 89 HOH HOH . J 4 HOH A 49 336 91 HOH HOH . J 4 HOH A 50 337 92 HOH HOH . J 4 HOH A 51 338 94 HOH HOH . J 4 HOH A 52 339 95 HOH HOH . J 4 HOH A 53 340 99 HOH HOH . J 4 HOH A 54 341 101 HOH HOH . J 4 HOH A 55 342 105 HOH HOH . J 4 HOH A 56 343 106 HOH HOH . J 4 HOH A 57 344 108 HOH HOH . J 4 HOH A 58 345 114 HOH HOH . J 4 HOH A 59 346 115 HOH HOH . J 4 HOH A 60 347 117 HOH HOH . J 4 HOH A 61 348 118 HOH HOH . J 4 HOH A 62 349 124 HOH HOH . J 4 HOH A 63 350 125 HOH HOH . J 4 HOH A 64 351 128 HOH HOH . J 4 HOH A 65 352 132 HOH HOH . J 4 HOH A 66 353 133 HOH HOH . J 4 HOH A 67 354 134 HOH HOH . J 4 HOH A 68 355 138 HOH HOH . J 4 HOH A 69 356 139 HOH HOH . J 4 HOH A 70 357 140 HOH HOH . J 4 HOH A 71 358 141 HOH HOH . J 4 HOH A 72 359 142 HOH HOH . J 4 HOH A 73 360 144 HOH HOH . J 4 HOH A 74 361 146 HOH HOH . J 4 HOH A 75 362 147 HOH HOH . J 4 HOH A 76 363 149 HOH HOH . J 4 HOH A 77 364 151 HOH HOH . J 4 HOH A 78 365 152 HOH HOH . J 4 HOH A 79 366 154 HOH HOH . J 4 HOH A 80 367 155 HOH HOH . J 4 HOH A 81 368 156 HOH HOH . J 4 HOH A 82 369 159 HOH HOH . J 4 HOH A 83 370 161 HOH HOH . J 4 HOH A 84 371 162 HOH HOH . J 4 HOH A 85 372 163 HOH HOH . J 4 HOH A 86 373 164 HOH HOH . J 4 HOH A 87 374 168 HOH HOH . J 4 HOH A 88 375 169 HOH HOH . J 4 HOH A 89 376 171 HOH HOH . J 4 HOH A 90 377 172 HOH HOH . J 4 HOH A 91 378 173 HOH HOH . J 4 HOH A 92 379 175 HOH HOH . J 4 HOH A 93 380 178 HOH HOH . J 4 HOH A 94 381 179 HOH HOH . J 4 HOH A 95 382 182 HOH HOH . J 4 HOH A 96 383 183 HOH HOH . J 4 HOH A 97 384 185 HOH HOH . J 4 HOH A 98 385 186 HOH HOH . J 4 HOH A 99 386 187 HOH HOH . J 4 HOH A 100 387 189 HOH HOH . J 4 HOH A 101 388 191 HOH HOH . J 4 HOH A 102 389 192 HOH HOH . J 4 HOH A 103 390 194 HOH HOH . J 4 HOH A 104 391 196 HOH HOH . J 4 HOH A 105 392 197 HOH HOH . J 4 HOH A 106 393 198 HOH HOH . J 4 HOH A 107 394 199 HOH HOH . J 4 HOH A 108 395 201 HOH HOH . J 4 HOH A 109 396 202 HOH HOH . J 4 HOH A 110 397 204 HOH HOH . J 4 HOH A 111 398 206 HOH HOH . J 4 HOH A 112 399 207 HOH HOH . J 4 HOH A 113 400 209 HOH HOH . J 4 HOH A 114 401 210 HOH HOH . J 4 HOH A 115 402 212 HOH HOH . J 4 HOH A 116 403 218 HOH HOH . J 4 HOH A 117 404 219 HOH HOH . J 4 HOH A 118 405 221 HOH HOH . J 4 HOH A 119 406 222 HOH HOH . J 4 HOH A 120 407 226 HOH HOH . J 4 HOH A 121 408 227 HOH HOH . J 4 HOH A 122 409 229 HOH HOH . J 4 HOH A 123 410 231 HOH HOH . J 4 HOH A 124 411 233 HOH HOH . J 4 HOH A 125 412 235 HOH HOH . J 4 HOH A 126 413 236 HOH HOH . J 4 HOH A 127 414 238 HOH HOH . J 4 HOH A 128 415 239 HOH HOH . J 4 HOH A 129 416 243 HOH HOH . J 4 HOH A 130 417 244 HOH HOH . J 4 HOH A 131 418 246 HOH HOH . J 4 HOH A 132 419 252 HOH HOH . K 4 HOH B 1 289 2 HOH HOH . K 4 HOH B 2 290 3 HOH HOH . K 4 HOH B 3 291 5 HOH HOH . K 4 HOH B 4 292 6 HOH HOH . K 4 HOH B 5 293 11 HOH HOH . K 4 HOH B 6 294 12 HOH HOH . K 4 HOH B 7 295 13 HOH HOH . K 4 HOH B 8 296 17 HOH HOH . K 4 HOH B 9 297 18 HOH HOH . K 4 HOH B 10 298 19 HOH HOH . K 4 HOH B 11 299 22 HOH HOH . K 4 HOH B 12 300 27 HOH HOH . K 4 HOH B 13 301 28 HOH HOH . K 4 HOH B 14 302 30 HOH HOH . K 4 HOH B 15 303 34 HOH HOH . K 4 HOH B 16 304 35 HOH HOH . K 4 HOH B 17 305 38 HOH HOH . K 4 HOH B 18 306 40 HOH HOH . K 4 HOH B 19 307 44 HOH HOH . K 4 HOH B 20 308 45 HOH HOH . K 4 HOH B 21 309 46 HOH HOH . K 4 HOH B 22 310 47 HOH HOH . K 4 HOH B 23 311 48 HOH HOH . K 4 HOH B 24 312 53 HOH HOH . K 4 HOH B 25 313 54 HOH HOH . K 4 HOH B 26 314 55 HOH HOH . K 4 HOH B 27 315 56 HOH HOH . K 4 HOH B 28 316 58 HOH HOH . K 4 HOH B 29 317 61 HOH HOH . K 4 HOH B 30 318 62 HOH HOH . K 4 HOH B 31 319 67 HOH HOH . K 4 HOH B 32 320 68 HOH HOH . K 4 HOH B 33 321 69 HOH HOH . K 4 HOH B 34 322 73 HOH HOH . K 4 HOH B 35 323 75 HOH HOH . K 4 HOH B 36 324 76 HOH HOH . K 4 HOH B 37 325 79 HOH HOH . K 4 HOH B 38 326 84 HOH HOH . K 4 HOH B 39 327 86 HOH HOH . K 4 HOH B 40 328 87 HOH HOH . K 4 HOH B 41 329 88 HOH HOH . K 4 HOH B 42 330 90 HOH HOH . K 4 HOH B 43 331 93 HOH HOH . K 4 HOH B 44 332 96 HOH HOH . K 4 HOH B 45 333 97 HOH HOH . K 4 HOH B 46 334 98 HOH HOH . K 4 HOH B 47 335 100 HOH HOH . K 4 HOH B 48 336 102 HOH HOH . K 4 HOH B 49 337 103 HOH HOH . K 4 HOH B 50 338 104 HOH HOH . K 4 HOH B 51 339 107 HOH HOH . K 4 HOH B 52 340 109 HOH HOH . K 4 HOH B 53 341 110 HOH HOH . K 4 HOH B 54 342 111 HOH HOH . K 4 HOH B 55 343 112 HOH HOH . K 4 HOH B 56 344 113 HOH HOH . K 4 HOH B 57 345 116 HOH HOH . K 4 HOH B 58 346 119 HOH HOH . K 4 HOH B 59 347 120 HOH HOH . K 4 HOH B 60 348 121 HOH HOH . K 4 HOH B 61 349 122 HOH HOH . K 4 HOH B 62 350 123 HOH HOH . K 4 HOH B 63 351 126 HOH HOH . K 4 HOH B 64 352 127 HOH HOH . K 4 HOH B 65 353 129 HOH HOH . K 4 HOH B 66 354 130 HOH HOH . K 4 HOH B 67 355 131 HOH HOH . K 4 HOH B 68 356 135 HOH HOH . K 4 HOH B 69 357 136 HOH HOH . K 4 HOH B 70 358 137 HOH HOH . K 4 HOH B 71 359 143 HOH HOH . K 4 HOH B 72 360 145 HOH HOH . K 4 HOH B 73 361 148 HOH HOH . K 4 HOH B 74 362 150 HOH HOH . K 4 HOH B 75 363 153 HOH HOH . K 4 HOH B 76 364 157 HOH HOH . K 4 HOH B 77 365 158 HOH HOH . K 4 HOH B 78 366 160 HOH HOH . K 4 HOH B 79 367 165 HOH HOH . K 4 HOH B 80 368 166 HOH HOH . K 4 HOH B 81 369 167 HOH HOH . K 4 HOH B 82 370 170 HOH HOH . K 4 HOH B 83 371 174 HOH HOH . K 4 HOH B 84 372 176 HOH HOH . K 4 HOH B 85 373 177 HOH HOH . K 4 HOH B 86 374 180 HOH HOH . K 4 HOH B 87 375 181 HOH HOH . K 4 HOH B 88 376 184 HOH HOH . K 4 HOH B 89 377 188 HOH HOH . K 4 HOH B 90 378 190 HOH HOH . K 4 HOH B 91 379 193 HOH HOH . K 4 HOH B 92 380 195 HOH HOH . K 4 HOH B 93 381 200 HOH HOH . K 4 HOH B 94 382 203 HOH HOH . K 4 HOH B 95 383 205 HOH HOH . K 4 HOH B 96 384 208 HOH HOH . K 4 HOH B 97 385 211 HOH HOH . K 4 HOH B 98 386 213 HOH HOH . K 4 HOH B 99 387 214 HOH HOH . K 4 HOH B 100 388 215 HOH HOH . K 4 HOH B 101 389 216 HOH HOH . K 4 HOH B 102 390 217 HOH HOH . K 4 HOH B 103 391 220 HOH HOH . K 4 HOH B 104 392 223 HOH HOH . K 4 HOH B 105 393 224 HOH HOH . K 4 HOH B 106 394 225 HOH HOH . K 4 HOH B 107 395 228 HOH HOH . K 4 HOH B 108 396 230 HOH HOH . K 4 HOH B 109 397 232 HOH HOH . K 4 HOH B 110 398 234 HOH HOH . K 4 HOH B 111 399 237 HOH HOH . K 4 HOH B 112 400 240 HOH HOH . K 4 HOH B 113 401 241 HOH HOH . K 4 HOH B 114 402 242 HOH HOH . K 4 HOH B 115 403 245 HOH HOH . K 4 HOH B 116 404 247 HOH HOH . K 4 HOH B 117 405 248 HOH HOH . K 4 HOH B 118 406 249 HOH HOH . K 4 HOH B 119 407 250 HOH HOH . K 4 HOH B 120 408 251 HOH HOH . K 4 HOH B 121 409 253 HOH HOH . K 4 HOH B 122 410 254 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol AU _atom_site.label_atom_id AU _atom_site.label_comp_id AU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 11.79 _atom_site.Cartn_y 54.403 _atom_site.Cartn_z 77.673 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id AU _atom_site.auth_comp_id AU _atom_site.auth_seq_id 285 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #