data_1RIU # _model_server_result.job_id bitILo2fVSigkA3Wsqq5QA _model_server_result.datetime_utc '2025-09-06 05:25:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1riu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 1RIU # _exptl.entry_id 1RIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.3 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(BENZOYLOXY)-8-AZA-BICYCLO[3.2.1]OCTANE-2-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RIU _cell.length_a 75.7 _cell.length_b 75.7 _cell.length_c 153.21 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 98 H CYS 92 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 98 H CYS 92 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 150 H CYS 142 1_555 B SG CYS 205 H CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 150 H CYS 142 1_555 B SG CYS 205 H CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C15 H17 N O4' _chem_comp.formula_weight 275.3 _chem_comp.id RBE _chem_comp.mon_nstd_flag . _chem_comp.name '3-(BENZOYLOXY)-8-AZA-BICYCLO[3.2.1]OCTANE-2-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NOR-BENZOYLECGONINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RBE sing 277 n n C1 C7 RBE sing 278 n n C1 N1 RBE sing 279 n n C1 H1 RBE sing 280 n n C2 C3 RBE sing 281 n n C2 C15 RBE sing 282 n n C2 H2 RBE sing 283 n n C3 C4 RBE sing 284 n n C3 O1 RBE sing 285 n n C3 H3 RBE sing 286 n n C4 C5 RBE sing 287 n n C4 H41 RBE sing 288 n n C4 H42 RBE sing 289 n n C5 C6 RBE sing 290 n n C5 N1 RBE sing 291 n n C5 H5 RBE sing 292 n n C6 C7 RBE sing 293 n n C6 H61 RBE sing 294 n n C6 H62 RBE sing 295 n n C7 H71 RBE sing 296 n n C7 H72 RBE sing 297 n n C8 C9 RBE sing 298 n n C8 O1 RBE sing 299 n n C8 O2 RBE doub 300 n n C9 C10 RBE doub 301 n y C9 C14 RBE sing 302 n y C10 C11 RBE sing 303 n y C10 H10 RBE sing 304 n n C11 C12 RBE doub 305 n y C11 H11 RBE sing 306 n n C12 C13 RBE sing 307 n y C12 H12 RBE sing 308 n n C13 C14 RBE doub 309 n y C13 H13 RBE sing 310 n n C14 H14 RBE sing 311 n n C15 O3 RBE sing 312 n n C15 O4 RBE doub 313 n n N1 HN11 RBE sing 314 n n N1 HN12 RBE sing 315 n n # _atom_sites.entry_id 1RIU _atom_sites.fract_transf_matrix[1][1] 0.01321 _atom_sites.fract_transf_matrix[1][2] 0.007627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RBE H 1 201 201 RBE RBE . D 4 HOH L 1 214 3 HOH TIP . D 4 HOH L 2 215 4 HOH TIP . D 4 HOH L 3 216 5 HOH TIP . D 4 HOH L 4 217 6 HOH TIP . D 4 HOH L 5 218 8 HOH TIP . D 4 HOH L 6 219 10 HOH TIP . D 4 HOH L 7 220 12 HOH TIP . D 4 HOH L 8 221 13 HOH TIP . D 4 HOH L 9 222 14 HOH TIP . D 4 HOH L 10 223 15 HOH TIP . D 4 HOH L 11 224 16 HOH TIP . D 4 HOH L 12 225 17 HOH TIP . D 4 HOH L 13 226 18 HOH TIP . D 4 HOH L 14 227 19 HOH TIP . D 4 HOH L 15 228 21 HOH TIP . D 4 HOH L 16 229 22 HOH TIP . D 4 HOH L 17 230 23 HOH TIP . D 4 HOH L 18 231 24 HOH TIP . D 4 HOH L 19 232 25 HOH TIP . D 4 HOH L 20 233 26 HOH TIP . D 4 HOH L 21 234 27 HOH TIP . D 4 HOH L 22 235 28 HOH TIP . D 4 HOH L 23 236 29 HOH TIP . D 4 HOH L 24 237 30 HOH TIP . D 4 HOH L 25 238 31 HOH TIP . D 4 HOH L 26 239 32 HOH TIP . D 4 HOH L 27 240 54 HOH TIP . D 4 HOH L 28 241 55 HOH TIP . D 4 HOH L 29 242 58 HOH TIP . D 4 HOH L 30 243 63 HOH TIP . D 4 HOH L 31 244 64 HOH TIP . D 4 HOH L 32 245 66 HOH TIP . D 4 HOH L 33 246 67 HOH TIP . D 4 HOH L 34 247 68 HOH TIP . D 4 HOH L 35 248 69 HOH TIP . D 4 HOH L 36 249 71 HOH TIP . D 4 HOH L 37 250 72 HOH TIP . D 4 HOH L 38 251 77 HOH TIP . D 4 HOH L 39 252 82 HOH TIP . D 4 HOH L 40 253 84 HOH TIP . D 4 HOH L 41 254 85 HOH TIP . D 4 HOH L 42 255 86 HOH TIP . D 4 HOH L 43 256 87 HOH TIP . D 4 HOH L 44 257 92 HOH TIP . D 4 HOH L 45 258 93 HOH TIP . D 4 HOH L 46 259 97 HOH TIP . D 4 HOH L 47 260 100 HOH TIP . D 4 HOH L 48 261 105 HOH TIP . D 4 HOH L 49 262 106 HOH TIP . D 4 HOH L 50 263 107 HOH TIP . D 4 HOH L 51 264 108 HOH TIP . D 4 HOH L 52 265 110 HOH TIP . D 4 HOH L 53 266 112 HOH TIP . D 4 HOH L 54 267 114 HOH TIP . D 4 HOH L 55 268 115 HOH TIP . D 4 HOH L 56 269 116 HOH TIP . D 4 HOH L 57 270 117 HOH TIP . D 4 HOH L 58 271 118 HOH TIP . D 4 HOH L 59 272 119 HOH TIP . D 4 HOH L 60 273 120 HOH TIP . D 4 HOH L 61 274 121 HOH TIP . D 4 HOH L 62 275 122 HOH TIP . D 4 HOH L 63 276 123 HOH TIP . D 4 HOH L 64 277 134 HOH TIP . D 4 HOH L 65 278 135 HOH TIP . D 4 HOH L 66 279 137 HOH TIP . D 4 HOH L 67 280 138 HOH TIP . D 4 HOH L 68 281 143 HOH TIP . D 4 HOH L 69 282 145 HOH TIP . D 4 HOH L 70 283 152 HOH TIP . D 4 HOH L 71 284 155 HOH TIP . D 4 HOH L 72 285 156 HOH TIP . D 4 HOH L 73 286 157 HOH TIP . D 4 HOH L 74 287 158 HOH TIP . D 4 HOH L 75 288 159 HOH TIP . D 4 HOH L 76 289 162 HOH TIP . D 4 HOH L 77 290 171 HOH TIP . D 4 HOH L 78 291 173 HOH TIP . D 4 HOH L 79 292 177 HOH TIP . D 4 HOH L 80 293 178 HOH TIP . D 4 HOH L 81 294 180 HOH TIP . D 4 HOH L 82 295 181 HOH TIP . D 4 HOH L 83 296 184 HOH TIP . D 4 HOH L 84 297 185 HOH TIP . D 4 HOH L 85 298 189 HOH TIP . D 4 HOH L 86 299 191 HOH TIP . D 4 HOH L 87 300 192 HOH TIP . D 4 HOH L 88 301 194 HOH TIP . E 4 HOH H 1 229 1 HOH TIP . E 4 HOH H 2 230 2 HOH TIP . E 4 HOH H 3 231 7 HOH TIP . E 4 HOH H 4 232 9 HOH TIP . E 4 HOH H 5 233 11 HOH TIP . E 4 HOH H 6 234 20 HOH TIP . E 4 HOH H 7 235 33 HOH TIP . E 4 HOH H 8 236 34 HOH TIP . E 4 HOH H 9 237 35 HOH TIP . E 4 HOH H 10 238 36 HOH TIP . E 4 HOH H 11 239 37 HOH TIP . E 4 HOH H 12 240 38 HOH TIP . E 4 HOH H 13 241 39 HOH TIP . E 4 HOH H 14 242 40 HOH TIP . E 4 HOH H 15 243 41 HOH TIP . E 4 HOH H 16 244 42 HOH TIP . E 4 HOH H 17 245 43 HOH TIP . E 4 HOH H 18 246 44 HOH TIP . E 4 HOH H 19 247 45 HOH TIP . E 4 HOH H 20 248 46 HOH TIP . E 4 HOH H 21 249 47 HOH TIP . E 4 HOH H 22 250 48 HOH TIP . E 4 HOH H 23 251 49 HOH TIP . E 4 HOH H 24 252 50 HOH TIP . E 4 HOH H 25 253 51 HOH TIP . E 4 HOH H 26 254 52 HOH TIP . E 4 HOH H 27 255 53 HOH TIP . E 4 HOH H 28 256 56 HOH TIP . E 4 HOH H 29 257 57 HOH TIP . E 4 HOH H 30 258 59 HOH TIP . E 4 HOH H 31 259 60 HOH TIP . E 4 HOH H 32 260 61 HOH TIP . E 4 HOH H 33 261 62 HOH TIP . E 4 HOH H 34 262 65 HOH TIP . E 4 HOH H 35 263 70 HOH TIP . E 4 HOH H 36 264 73 HOH TIP . E 4 HOH H 37 265 74 HOH TIP . E 4 HOH H 38 266 75 HOH TIP . E 4 HOH H 39 267 76 HOH TIP . E 4 HOH H 40 268 78 HOH TIP . E 4 HOH H 41 269 79 HOH TIP . E 4 HOH H 42 270 80 HOH TIP . E 4 HOH H 43 271 81 HOH TIP . E 4 HOH H 44 272 83 HOH TIP . E 4 HOH H 45 273 88 HOH TIP . E 4 HOH H 46 274 89 HOH TIP . E 4 HOH H 47 275 90 HOH TIP . E 4 HOH H 48 276 91 HOH TIP . E 4 HOH H 49 277 94 HOH TIP . E 4 HOH H 50 278 95 HOH TIP . E 4 HOH H 51 279 96 HOH TIP . E 4 HOH H 52 280 98 HOH TIP . E 4 HOH H 53 281 99 HOH TIP . E 4 HOH H 54 282 101 HOH TIP . E 4 HOH H 55 283 102 HOH TIP . E 4 HOH H 56 284 103 HOH TIP . E 4 HOH H 57 285 104 HOH TIP . E 4 HOH H 58 286 109 HOH TIP . E 4 HOH H 59 287 111 HOH TIP . E 4 HOH H 60 288 113 HOH TIP . E 4 HOH H 61 289 124 HOH TIP . E 4 HOH H 62 290 125 HOH TIP . E 4 HOH H 63 291 126 HOH TIP . E 4 HOH H 64 292 127 HOH TIP . E 4 HOH H 65 293 128 HOH TIP . E 4 HOH H 66 294 129 HOH TIP . E 4 HOH H 67 295 130 HOH TIP . E 4 HOH H 68 296 131 HOH TIP . E 4 HOH H 69 297 132 HOH TIP . E 4 HOH H 70 298 133 HOH TIP . E 4 HOH H 71 299 136 HOH TIP . E 4 HOH H 72 300 139 HOH TIP . E 4 HOH H 73 301 140 HOH TIP . E 4 HOH H 74 302 141 HOH TIP . E 4 HOH H 75 303 142 HOH TIP . E 4 HOH H 76 304 144 HOH TIP . E 4 HOH H 77 305 146 HOH TIP . E 4 HOH H 78 306 147 HOH TIP . E 4 HOH H 79 307 148 HOH TIP . E 4 HOH H 80 308 149 HOH TIP . E 4 HOH H 81 309 150 HOH TIP . E 4 HOH H 82 310 151 HOH TIP . E 4 HOH H 83 311 153 HOH TIP . E 4 HOH H 84 312 154 HOH TIP . E 4 HOH H 85 313 160 HOH TIP . E 4 HOH H 86 314 161 HOH TIP . E 4 HOH H 87 315 163 HOH TIP . E 4 HOH H 88 316 164 HOH TIP . E 4 HOH H 89 317 165 HOH TIP . E 4 HOH H 90 318 166 HOH TIP . E 4 HOH H 91 319 167 HOH TIP . E 4 HOH H 92 320 168 HOH TIP . E 4 HOH H 93 321 169 HOH TIP . E 4 HOH H 94 322 170 HOH TIP . E 4 HOH H 95 323 172 HOH TIP . E 4 HOH H 96 324 174 HOH TIP . E 4 HOH H 97 325 175 HOH TIP . E 4 HOH H 98 326 176 HOH TIP . E 4 HOH H 99 327 179 HOH TIP . E 4 HOH H 100 328 182 HOH TIP . E 4 HOH H 101 329 183 HOH TIP . E 4 HOH H 102 330 186 HOH TIP . E 4 HOH H 103 331 187 HOH TIP . E 4 HOH H 104 332 188 HOH TIP . E 4 HOH H 105 333 190 HOH TIP . E 4 HOH H 106 334 193 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RBE . . . C 3 22.907 -1.291 26.641 1 18.89 ? C1 RBE 201 H 1 HETATM 2 C C2 RBE . . . C 3 24.293 -1.96 26.271 1 19.47 ? C2 RBE 201 H 1 HETATM 3 C C3 RBE . . . C 3 24.187 -2.401 24.781 1 18.38 ? C3 RBE 201 H 1 HETATM 4 C C4 RBE . . . C 3 22.925 -3.188 24.508 1 18.7 ? C4 RBE 201 H 1 HETATM 5 C C5 RBE . . . C 3 21.711 -2.368 25.036 1 15.82 ? C5 RBE 201 H 1 HETATM 6 C C6 RBE . . . C 3 21.676 -0.897 24.573 1 18.62 ? C6 RBE 201 H 1 HETATM 7 C C7 RBE . . . C 3 22.489 -0.146 25.689 1 19.33 ? C7 RBE 201 H 1 HETATM 8 C C8 RBE . . . C 3 26.619 -2.608 24.414 1 22.13 ? C8 RBE 201 H 1 HETATM 9 C C9 RBE . . . C 3 27.647 -3.614 23.97 1 21.94 ? C9 RBE 201 H 1 HETATM 10 C C10 RBE . . . C 3 27.288 -4.906 23.57 1 25.74 ? C10 RBE 201 H 1 HETATM 11 C C11 RBE . . . C 3 28.285 -5.824 23.161 1 25.44 ? C11 RBE 201 H 1 HETATM 12 C C12 RBE . . . C 3 29.617 -5.443 23.154 1 24.46 ? C12 RBE 201 H 1 HETATM 13 C C13 RBE . . . C 3 29.98 -4.174 23.545 1 24.21 ? C13 RBE 201 H 1 HETATM 14 C C14 RBE . . . C 3 29.005 -3.232 23.962 1 21.12 ? C14 RBE 201 H 1 HETATM 15 C C15 RBE . . . C 3 24.653 -3.103 27.256 1 19.14 ? C15 RBE 201 H 1 HETATM 16 N N1 RBE . . . C 3 21.84 -2.318 26.503 1 18.04 ? N1 RBE 201 H 1 HETATM 17 O O1 RBE . . . C 3 25.381 -3.135 24.364 1 19.67 ? O1 RBE 201 H 1 HETATM 18 O O2 RBE . . . C 3 26.861 -1.5 24.765 1 18.86 ? O2 RBE 201 H 1 HETATM 19 O O3 RBE . . . C 3 25.66 -3.22 27.893 1 20.15 ? O3 RBE 201 H 1 HETATM 20 O O4 RBE . . . C 3 23.69 -4.009 27.287 1 19.13 ? O4 RBE 201 H 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #