data_1RJ5 # _model_server_result.job_id vuNipbP77Utk3AoWOQBxVA _model_server_result.datetime_utc '2024-11-23 00:05:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":701}' # _entry.id 1RJ5 # _exptl.entry_id 1RJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.9 _cell.angle_gamma 90 _cell.entry_id 1RJ5 _cell.length_a 59 _cell.length_b 75.6 _cell.length_c 73.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,J 1 1 B,D,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG D 801 NAG 2 n C NAG 2 C 2 NAG D 802 NAG 3 n D NAG 1 D 1 NAG C 901 NAG 3 n D NAG 2 D 2 NAG C 902 NAG 3 n D BMA 3 D 3 BMA C 903 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 204 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 204 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 196 A ASN 195 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 196 B ASN 195 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale5 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? metalc ? metalc1 A NE2 HIS 92 A HIS 94 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 A ND1 HIS 118 A HIS 119 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 E ZN ZN . A ZN 601 1_555 G O ACY . A ACY 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc5 E ZN ZN . A ZN 601 1_555 J O HOH . A HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc6 B NE2 HIS 92 B HIS 94 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc7 B NE2 HIS 94 B HIS 96 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc8 B ND1 HIS 118 B HIS 119 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc9 H ZN ZN . B ZN 601 1_555 I O ACY . B ACY 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc10 H ZN ZN . B ZN 601 1_555 K O HOH . B HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 1RJ5 _atom_sites.fract_transf_matrix[1][1] 0.016941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002659 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN A 1 601 601 ZN ZN . F 5 CL A 1 603 603 CL CL . G 6 ACY A 1 701 701 ACY ACY . H 4 ZN B 1 601 602 ZN ZN . I 6 ACY B 1 702 702 ACY ACY . J 7 HOH A 1 803 10 HOH HOH . J 7 HOH A 2 804 11 HOH HOH . J 7 HOH A 3 805 12 HOH HOH . J 7 HOH A 4 806 13 HOH HOH . J 7 HOH A 5 807 14 HOH HOH . J 7 HOH A 6 808 15 HOH HOH . J 7 HOH A 7 809 16 HOH HOH . J 7 HOH A 8 810 25 HOH HOH . J 7 HOH A 9 811 26 HOH HOH . J 7 HOH A 10 812 27 HOH HOH . J 7 HOH A 11 813 28 HOH HOH . J 7 HOH A 12 814 29 HOH HOH . J 7 HOH A 13 815 30 HOH HOH . J 7 HOH A 14 816 31 HOH HOH . J 7 HOH A 15 817 32 HOH HOH . J 7 HOH A 16 818 33 HOH HOH . J 7 HOH A 17 819 34 HOH HOH . J 7 HOH A 18 820 35 HOH HOH . J 7 HOH A 19 821 36 HOH HOH . J 7 HOH A 20 822 37 HOH HOH . J 7 HOH A 21 823 38 HOH HOH . J 7 HOH A 22 824 39 HOH HOH . J 7 HOH A 23 825 40 HOH HOH . J 7 HOH A 24 826 41 HOH HOH . J 7 HOH A 25 827 42 HOH HOH . J 7 HOH A 26 828 43 HOH HOH . J 7 HOH A 27 829 44 HOH HOH . J 7 HOH A 28 830 45 HOH HOH . J 7 HOH A 29 831 46 HOH HOH . J 7 HOH A 30 832 47 HOH HOH . J 7 HOH A 31 833 48 HOH HOH . J 7 HOH A 32 834 49 HOH HOH . J 7 HOH A 33 835 50 HOH HOH . J 7 HOH A 34 836 51 HOH HOH . J 7 HOH A 35 837 52 HOH HOH . J 7 HOH A 36 838 53 HOH HOH . J 7 HOH A 37 839 54 HOH HOH . J 7 HOH A 38 840 55 HOH HOH . J 7 HOH A 39 841 56 HOH HOH . J 7 HOH A 40 842 57 HOH HOH . J 7 HOH A 41 843 58 HOH HOH . J 7 HOH A 42 844 59 HOH HOH . J 7 HOH A 43 845 60 HOH HOH . J 7 HOH A 44 846 61 HOH HOH . J 7 HOH A 45 847 62 HOH HOH . J 7 HOH A 46 848 63 HOH HOH . J 7 HOH A 47 849 85 HOH HOH . J 7 HOH A 48 850 86 HOH HOH . J 7 HOH A 49 851 87 HOH HOH . J 7 HOH A 50 852 88 HOH HOH . J 7 HOH A 51 853 89 HOH HOH . J 7 HOH A 52 854 90 HOH HOH . K 7 HOH B 1 904 1 HOH HOH . K 7 HOH B 2 905 2 HOH HOH . K 7 HOH B 3 906 3 HOH HOH . K 7 HOH B 4 907 4 HOH HOH . K 7 HOH B 5 908 5 HOH HOH . K 7 HOH B 6 909 6 HOH HOH . K 7 HOH B 7 910 7 HOH HOH . K 7 HOH B 8 911 8 HOH HOH . K 7 HOH B 9 912 9 HOH HOH . K 7 HOH B 10 913 17 HOH HOH . K 7 HOH B 11 914 18 HOH HOH . K 7 HOH B 12 915 19 HOH HOH . K 7 HOH B 13 916 20 HOH HOH . K 7 HOH B 14 917 21 HOH HOH . K 7 HOH B 15 918 22 HOH HOH . K 7 HOH B 16 919 23 HOH HOH . K 7 HOH B 17 920 24 HOH HOH . K 7 HOH B 18 921 64 HOH HOH . K 7 HOH B 19 922 65 HOH HOH . K 7 HOH B 20 923 66 HOH HOH . K 7 HOH B 21 924 67 HOH HOH . K 7 HOH B 22 925 68 HOH HOH . K 7 HOH B 23 926 69 HOH HOH . K 7 HOH B 24 927 70 HOH HOH . K 7 HOH B 25 928 71 HOH HOH . K 7 HOH B 26 929 72 HOH HOH . K 7 HOH B 27 930 73 HOH HOH . K 7 HOH B 28 931 74 HOH HOH . K 7 HOH B 29 932 75 HOH HOH . K 7 HOH B 30 933 76 HOH HOH . K 7 HOH B 31 934 77 HOH HOH . K 7 HOH B 32 935 78 HOH HOH . K 7 HOH B 33 936 79 HOH HOH . K 7 HOH B 34 937 80 HOH HOH . K 7 HOH B 35 938 81 HOH HOH . K 7 HOH B 36 939 82 HOH HOH . K 7 HOH B 37 940 83 HOH HOH . K 7 HOH B 38 941 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . G 6 17.387 0.108 9.304 1 41.71 ? C ACY 701 A 1 HETATM 2 O O ACY . . . G 6 17.218 -0.26 8.073 1 40.88 ? O ACY 701 A 1 HETATM 3 O OXT ACY . . . G 6 16.527 0.075 10.255 1 43.29 ? OXT ACY 701 A 1 HETATM 4 C CH3 ACY . . . G 6 18.782 0.623 9.578 1 41.01 ? CH3 ACY 701 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #